Wall clock time and date at job start Wed Apr 1 2020 03:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46951 * 2 1 4 4 C 1.50701 * 109.47164 * 239.99637 * 2 1 3 5 5 H 1.07993 * 120.00260 * 244.89628 * 4 2 1 6 6 C 1.37880 * 119.99939 * 64.89908 * 4 2 1 7 7 N 1.31518 * 119.99733 * 5.69837 * 6 4 2 8 8 Si 1.86799 * 120.00136 * 185.70406 * 6 4 2 9 9 H 1.48497 * 109.47209 * 94.99343 * 8 6 4 10 10 H 1.48506 * 109.46973 * 214.99570 * 8 6 4 11 11 H 1.48503 * 109.46836 * 334.99315 * 8 6 4 12 12 N 1.46899 * 109.47285 * 120.00003 * 2 1 3 13 13 C 1.46903 * 110.99938 * 58.94842 * 12 2 1 14 14 C 1.38588 * 110.99465 * 295.00123 * 12 2 1 15 15 N 1.31211 * 126.47730 * 14.20854 * 14 12 2 16 16 N 1.28529 * 109.86265 * 180.25781 * 15 14 12 17 17 C 1.30300 * 110.04850 * 359.74122 * 16 15 14 18 18 C 1.50698 * 126.34432 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47230 * 277.28261 * 18 17 16 20 20 C 1.53003 * 117.49576 * 241.46720 * 19 18 17 21 21 C 1.52999 * 117.49619 * 172.80779 * 19 18 17 22 22 N 1.36456 * 126.46540 * 194.03201 * 14 12 2 23 23 C 1.46497 * 127.14368 * 0.02562 * 22 14 12 24 24 C 1.50696 * 109.46949 * 82.97165 * 23 22 14 25 25 C 1.35358 * 126.90443 * 86.58759 * 24 23 22 26 26 N 1.33779 * 106.49292 * 179.73230 * 25 24 23 27 27 N 1.28637 * 108.88556 * 359.97438 * 26 25 24 28 28 N 1.28720 * 110.17609 * 0.02562 * 27 26 25 29 29 C 1.46503 * 125.86278 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47711 * 304.62819 * 1 2 3 31 31 H 1.09003 * 109.46879 * 64.62725 * 1 2 3 32 32 H 1.09002 * 109.47121 * 184.62544 * 1 2 3 33 33 H 0.97007 * 119.99886 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47448 * 299.87705 * 13 12 2 35 35 H 1.09001 * 109.46316 * 59.87998 * 13 12 2 36 36 H 1.08995 * 109.47023 * 179.87289 * 13 12 2 37 37 H 1.09009 * 109.47337 * 37.28015 * 18 17 16 38 38 H 1.09003 * 109.47611 * 157.27849 * 18 17 16 39 39 H 1.08998 * 115.55065 * 27.13710 * 19 18 17 40 40 H 1.09000 * 117.49652 * 359.97438 * 20 19 18 41 41 H 1.09002 * 117.49479 * 145.02221 * 20 19 18 42 42 H 1.09011 * 117.49421 * 214.97280 * 21 19 18 43 43 H 1.08994 * 117.50450 * 359.97438 * 21 19 18 44 44 H 1.09000 * 109.46719 * 322.97650 * 23 22 14 45 45 H 1.08999 * 109.47530 * 202.98096 * 23 22 14 46 46 H 1.07995 * 126.75570 * 359.75115 * 25 24 23 47 47 H 1.08990 * 109.47411 * 274.63723 * 29 28 27 48 48 H 1.09005 * 109.46990 * 34.64299 * 29 28 27 49 49 H 1.09003 * 109.46705 * 154.63537 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5864 -1.6323 -1.1333 6 6 1.7845 -0.1835 -2.4802 7 7 1.2091 0.9935 -2.5953 8 14 2.2660 -1.1414 -4.0100 9 1 1.0976 -1.9186 -4.4955 10 1 2.7061 -0.1963 -5.0676 11 1 3.3773 -2.0705 -3.6828 12 7 2.0197 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6696 -0.0022 2.3490 15 7 0.7870 0.9644 2.4402 16 7 0.7186 1.3802 3.6545 17 6 1.5429 0.7053 4.4048 18 6 1.7593 0.8906 5.8846 19 6 2.7375 2.0439 6.1166 20 6 4.0539 1.7217 6.8267 21 6 2.9597 2.5023 7.5593 22 7 2.1755 -0.2017 3.6006 23 6 3.1905 -1.1801 3.9988 24 6 4.5622 -0.6259 3.7123 25 6 5.3064 0.1616 4.5236 26 7 6.4482 0.4073 3.8714 27 7 6.4136 -0.1889 2.7321 28 7 5.3003 -0.8204 2.5951 29 6 4.9015 -1.6142 1.4302 30 1 -0.3634 0.5839 0.8456 31 1 -0.3633 0.4404 -0.9286 32 1 -0.3633 -1.0243 0.0829 33 1 1.0351 1.3644 -3.4746 34 1 0.4384 -2.0741 1.2663 35 1 1.8743 -2.6144 0.3636 36 1 1.9074 -2.5663 2.1426 37 1 0.8079 1.1189 6.3652 38 1 2.1702 -0.0254 6.3093 39 1 2.7593 2.8058 5.3374 40 1 4.2228 0.6881 7.1289 41 1 4.9417 2.2719 6.5148 42 1 3.1283 3.5658 7.7291 43 1 2.4089 1.9826 8.3431 44 1 3.0465 -2.1024 3.4360 45 1 3.0974 -1.3869 5.0649 46 1 5.0324 0.5207 5.5046 47 1 4.4547 -0.9607 0.6810 48 1 5.7782 -2.1053 1.0077 49 1 4.1749 -2.3673 1.7352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390910614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:10 Heat of formation + Delta-G solvation = 235.618936 kcal Electronic energy + Delta-G solvation = -32490.714942 eV Core-core repulsion = 28493.982347 eV Total energy + Delta-G solvation = -3996.732595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.31196 -42.55756 -37.95516 -37.36451 -35.60002 -34.35478 -32.94130 -31.65705 -31.03207 -28.95620 -27.86699 -27.78549 -26.85823 -25.33446 -25.08439 -23.34557 -22.18910 -21.81263 -21.63027 -21.09512 -20.03308 -19.54152 -17.38859 -17.18230 -16.43749 -16.25903 -15.93617 -15.75417 -15.59761 -15.15515 -14.76855 -14.33773 -14.16164 -13.99168 -13.65304 -13.41017 -13.20782 -12.95980 -12.76569 -12.65159 -12.43751 -11.84072 -11.75943 -11.69909 -11.65631 -11.56001 -11.32208 -11.03210 -10.93368 -10.84681 -10.61707 -10.50216 -10.33353 -10.19118 -10.14838 -10.02562 -9.94328 -9.83934 -9.27463 -9.01185 -8.91213 -8.50188 -7.61164 -6.15589 -4.22173 1.40528 2.04822 2.44694 2.49513 2.75267 3.20965 3.26739 3.28367 3.29915 3.53913 4.16214 4.20005 4.22242 4.30462 4.45096 4.55498 4.57627 4.65762 4.79137 4.86896 4.97485 5.06247 5.18483 5.24714 5.31809 5.35642 5.40717 5.41962 5.48543 5.68189 5.72492 5.82259 5.86858 5.89904 5.91782 6.03001 6.11150 6.14395 6.17983 6.27992 6.58035 6.66771 6.82491 6.99633 7.16066 7.33184 7.50204 7.60991 7.83445 8.09354 8.31353 8.53913 8.78930 9.23345 9.42674 10.92609 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004097 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.001533 B = 6832.212302 C = 8116.403951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.230 3.770 3 H 0.053 0.947 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.879 5.879 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.458 5.458 13 C 0.028 3.972 14 C 0.381 3.619 15 N -0.308 5.308 16 N -0.283 5.283 17 C 0.163 3.837 18 C 0.006 3.994 19 C -0.144 4.144 20 C -0.192 4.192 21 C -0.170 4.170 22 N -0.482 5.482 23 C 0.191 3.809 24 C -0.049 4.049 25 C -0.041 4.041 26 N -0.280 5.280 27 N -0.077 5.077 28 N -0.259 5.259 29 C 0.075 3.925 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.196 0.804 47 H 0.124 0.876 48 H 0.094 0.906 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -7.204 18.165 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.126 3.874 3 H 0.071 0.929 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.516 5.516 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.182 5.182 13 C -0.119 4.119 14 C 0.026 3.974 15 N -0.151 5.151 16 N -0.122 5.122 17 C -0.105 4.105 18 C -0.033 4.033 19 C -0.164 4.164 20 C -0.229 4.229 21 C -0.207 4.207 22 N -0.180 5.180 23 C 0.066 3.934 24 C -0.183 4.183 25 C -0.200 4.200 26 N -0.143 5.143 27 N -0.057 5.057 28 N -0.053 5.053 29 C -0.065 4.065 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.213 0.787 47 H 0.142 0.858 48 H 0.113 0.887 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.373 -5.747 16.834 18.317 hybrid contribution -0.564 -1.667 -0.373 1.799 sum 3.809 -7.414 16.460 18.450 Atomic orbital electron populations 1.22494 0.99134 0.98799 1.02939 1.19362 0.91270 0.94709 0.82089 0.92931 1.20953 1.36394 1.08941 0.89538 0.91860 1.24892 0.95078 0.94694 0.98950 1.69974 1.41840 1.15806 1.24002 0.86531 0.78620 0.79724 0.82788 1.20710 1.21192 1.19811 1.59542 1.56540 1.02820 0.99319 1.22481 0.99553 0.88216 1.01696 1.23254 0.92240 0.97219 0.84712 1.74900 1.16237 1.13451 1.10493 1.74006 1.18775 1.21506 0.97883 1.24396 0.97407 0.92680 0.95976 1.19485 1.00626 0.97634 0.85576 1.22254 0.97216 1.00535 0.96368 1.23204 0.93504 1.01283 1.04901 1.22986 1.02424 1.00776 0.94548 1.46256 1.32836 1.30414 1.08484 1.19961 0.80180 0.90467 1.02835 1.22042 0.97759 1.08180 0.90340 1.23941 0.91987 1.01040 1.03067 1.75097 1.20770 1.18348 1.00097 1.78317 1.04627 1.08258 1.14521 1.47298 1.11424 1.32502 1.14035 1.22632 1.02102 0.96275 0.85530 0.92619 0.90712 0.95855 0.92651 0.93871 0.88595 0.93976 0.88089 0.90367 0.87179 0.88432 0.88123 0.88589 0.88546 0.87681 0.86501 0.78715 0.85774 0.88721 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.44 37.16 0.31 -3.82 16 2 C 0.23 5.39 1.95 -68.87 -0.13 5.25 16 3 H 0.05 1.48 8.10 -51.93 -0.42 1.06 16 4 C -0.52 -12.62 7.98 -34.44 -0.27 -12.90 16 5 H 0.06 1.43 6.57 -52.49 -0.34 1.09 16 6 C 0.07 1.74 5.22 -17.82 -0.09 1.65 16 7 N -0.88 -24.33 11.94 55.43 0.66 -23.66 16 8 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 N -0.46 -8.48 3.11 -176.08 -0.55 -9.03 16 13 C 0.03 0.43 7.98 60.07 0.48 0.91 16 14 C 0.38 7.11 6.68 -318.87 -2.13 4.98 16 15 N -0.31 -6.61 8.99 30.32 0.27 -6.34 16 16 N -0.28 -5.42 12.18 32.99 0.40 -5.02 16 17 C 0.16 2.39 7.27 -154.01 -1.12 1.27 16 18 C 0.01 0.06 5.93 -27.88 -0.17 -0.10 16 19 C -0.14 -1.41 5.73 -90.62 -0.52 -1.93 16 20 C -0.19 -1.51 7.40 -26.69 -0.20 -1.70 16 21 C -0.17 -1.26 10.25 -26.69 -0.27 -1.53 16 22 N -0.48 -6.99 2.79 -115.37 -0.32 -7.31 16 23 C 0.19 2.01 6.29 -5.20 -0.03 1.98 16 24 C -0.05 -0.64 6.58 -82.09 -0.54 -1.18 16 25 C -0.04 -0.54 11.99 -17.73 -0.21 -0.76 16 26 N -0.28 -4.57 12.41 30.24 0.38 -4.20 16 27 N -0.08 -1.30 13.17 60.35 0.79 -0.50 16 28 N -0.26 -3.75 3.74 -63.79 -0.24 -3.98 16 29 C 0.08 0.94 10.46 59.85 0.63 1.57 16 30 H 0.06 1.34 5.52 -51.93 -0.29 1.05 16 31 H 0.07 1.97 6.61 -51.93 -0.34 1.63 16 32 H 0.02 0.50 6.14 -51.93 -0.32 0.19 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.04 0.72 6.19 -51.93 -0.32 0.40 16 35 H 0.10 1.47 6.44 -51.93 -0.33 1.13 16 36 H 0.04 0.49 5.60 -51.93 -0.29 0.20 16 37 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.08 0.53 6.69 -51.93 -0.35 0.18 16 39 H 0.11 1.40 8.05 -51.93 -0.42 0.98 16 40 H 0.10 0.60 7.31 -51.93 -0.38 0.22 16 41 H 0.10 0.87 7.96 -51.93 -0.41 0.46 16 42 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.96 4.71 -51.93 -0.24 0.72 16 45 H 0.12 0.80 6.95 -51.93 -0.36 0.43 16 46 H 0.20 2.01 3.48 -52.49 -0.18 1.83 16 47 H 0.12 1.97 7.32 -51.93 -0.38 1.59 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.09 0.96 5.90 -51.93 -0.31 0.65 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -32.53 379.76 -8.69 -41.23 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.52 Total: 4.58 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.27 Total: -6.32 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 1.40 Total: -60.05 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.53 -8.69 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390910614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.846 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 244.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 235.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds