Wall clock time and date at job start Wed Apr 1 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46951 * 2 1 4 4 C 1.50701 * 109.47164 * 239.99637 * 2 1 3 5 5 H 1.07993 * 120.00260 * 244.89628 * 4 2 1 6 6 C 1.37880 * 119.99939 * 64.89908 * 4 2 1 7 7 N 1.31518 * 119.99733 * 5.69837 * 6 4 2 8 8 Si 1.86799 * 120.00136 * 185.70406 * 6 4 2 9 9 H 1.48497 * 109.47209 * 94.99343 * 8 6 4 10 10 H 1.48506 * 109.46973 * 214.99570 * 8 6 4 11 11 H 1.48503 * 109.46836 * 334.99315 * 8 6 4 12 12 N 1.46899 * 109.47285 * 120.00003 * 2 1 3 13 13 C 1.46903 * 110.99938 * 58.94842 * 12 2 1 14 14 C 1.38588 * 110.99465 * 295.00123 * 12 2 1 15 15 N 1.31211 * 126.47730 * 14.20854 * 14 12 2 16 16 N 1.28529 * 109.86265 * 180.25781 * 15 14 12 17 17 C 1.30300 * 110.04850 * 359.74122 * 16 15 14 18 18 C 1.50698 * 126.34432 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47230 * 277.28261 * 18 17 16 20 20 C 1.53003 * 117.49576 * 241.46720 * 19 18 17 21 21 C 1.52999 * 117.49619 * 172.80779 * 19 18 17 22 22 N 1.36456 * 126.46540 * 194.03201 * 14 12 2 23 23 C 1.46497 * 127.14368 * 0.02562 * 22 14 12 24 24 C 1.50696 * 109.46949 * 82.97165 * 23 22 14 25 25 C 1.35358 * 126.90443 * 86.58759 * 24 23 22 26 26 N 1.33779 * 106.49292 * 179.73230 * 25 24 23 27 27 N 1.28637 * 108.88556 * 359.97438 * 26 25 24 28 28 N 1.28720 * 110.17609 * 0.02562 * 27 26 25 29 29 C 1.46503 * 125.86278 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47711 * 304.62819 * 1 2 3 31 31 H 1.09003 * 109.46879 * 64.62725 * 1 2 3 32 32 H 1.09002 * 109.47121 * 184.62544 * 1 2 3 33 33 H 0.97007 * 119.99886 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47448 * 299.87705 * 13 12 2 35 35 H 1.09001 * 109.46316 * 59.87998 * 13 12 2 36 36 H 1.08995 * 109.47023 * 179.87289 * 13 12 2 37 37 H 1.09009 * 109.47337 * 37.28015 * 18 17 16 38 38 H 1.09003 * 109.47611 * 157.27849 * 18 17 16 39 39 H 1.08998 * 115.55065 * 27.13710 * 19 18 17 40 40 H 1.09000 * 117.49652 * 359.97438 * 20 19 18 41 41 H 1.09002 * 117.49479 * 145.02221 * 20 19 18 42 42 H 1.09011 * 117.49421 * 214.97280 * 21 19 18 43 43 H 1.08994 * 117.50450 * 359.97438 * 21 19 18 44 44 H 1.09000 * 109.46719 * 322.97650 * 23 22 14 45 45 H 1.08999 * 109.47530 * 202.98096 * 23 22 14 46 46 H 1.07995 * 126.75570 * 359.75115 * 25 24 23 47 47 H 1.08990 * 109.47411 * 274.63723 * 29 28 27 48 48 H 1.09005 * 109.46990 * 34.64299 * 29 28 27 49 49 H 1.09003 * 109.46705 * 154.63537 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5864 -1.6323 -1.1333 6 6 1.7845 -0.1835 -2.4802 7 7 1.2091 0.9935 -2.5953 8 14 2.2660 -1.1414 -4.0100 9 1 1.0976 -1.9186 -4.4955 10 1 2.7061 -0.1963 -5.0676 11 1 3.3773 -2.0705 -3.6828 12 7 2.0197 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6696 -0.0022 2.3490 15 7 0.7870 0.9644 2.4402 16 7 0.7186 1.3802 3.6545 17 6 1.5429 0.7053 4.4048 18 6 1.7593 0.8906 5.8846 19 6 2.7375 2.0439 6.1166 20 6 4.0539 1.7217 6.8267 21 6 2.9597 2.5023 7.5593 22 7 2.1755 -0.2017 3.6006 23 6 3.1905 -1.1801 3.9988 24 6 4.5622 -0.6259 3.7123 25 6 5.3064 0.1616 4.5236 26 7 6.4482 0.4073 3.8714 27 7 6.4136 -0.1889 2.7321 28 7 5.3003 -0.8204 2.5951 29 6 4.9015 -1.6142 1.4302 30 1 -0.3634 0.5839 0.8456 31 1 -0.3633 0.4404 -0.9286 32 1 -0.3633 -1.0243 0.0829 33 1 1.0351 1.3644 -3.4746 34 1 0.4384 -2.0741 1.2663 35 1 1.8743 -2.6144 0.3636 36 1 1.9074 -2.5663 2.1426 37 1 0.8079 1.1189 6.3652 38 1 2.1702 -0.0254 6.3093 39 1 2.7593 2.8058 5.3374 40 1 4.2228 0.6881 7.1289 41 1 4.9417 2.2719 6.5148 42 1 3.1283 3.5658 7.7291 43 1 2.4089 1.9826 8.3431 44 1 3.0465 -2.1024 3.4360 45 1 3.0974 -1.3869 5.0649 46 1 5.0324 0.5207 5.5046 47 1 4.4547 -0.9607 0.6810 48 1 5.7782 -2.1053 1.0077 49 1 4.1749 -2.3673 1.7352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390910614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:09 Heat of formation + Delta-G solvation = 216.615191 kcal Electronic energy + Delta-G solvation = -32491.539007 eV Core-core repulsion = 28493.982347 eV Total energy + Delta-G solvation = -3997.556660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.42280 -43.82731 -39.18277 -38.39656 -36.73481 -35.44115 -34.78518 -32.73839 -32.23686 -30.67938 -28.98493 -28.88202 -27.89098 -27.18252 -26.53636 -24.24774 -23.39653 -22.91249 -22.73939 -22.12514 -21.08727 -20.95062 -18.53822 -18.31320 -18.09242 -17.40526 -17.17106 -17.12688 -16.74391 -16.39401 -16.04540 -15.49617 -15.29159 -15.16409 -14.69990 -14.67615 -14.34824 -14.10372 -14.01715 -13.65702 -13.48948 -13.45932 -13.09001 -12.92584 -12.83319 -12.68616 -12.55010 -12.47738 -12.26090 -12.21398 -12.12523 -11.99898 -11.93459 -11.46251 -11.27181 -11.10253 -11.06605 -10.84227 -10.75625 -10.50778 -10.39229 -10.35230 -9.08377 -8.13109 -6.25190 0.31719 0.84555 1.31343 1.45545 1.46413 1.48657 1.55956 1.64782 1.93680 2.42279 2.87505 3.02415 3.21138 3.22977 3.35417 3.41312 3.65211 3.85978 3.90147 3.97438 4.04638 4.12908 4.15772 4.23604 4.32842 4.35638 4.47892 4.57552 4.66095 4.70486 4.79551 4.81703 4.83550 4.85672 4.92754 5.04267 5.09591 5.10717 5.12733 5.17053 5.27441 5.31701 5.37221 5.47768 5.52762 5.61457 5.65112 5.85841 6.05908 6.18702 6.59803 6.86085 7.42894 7.43928 7.90322 8.96090 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004097 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.001533 B = 6832.212302 C = 8116.403951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.246 3.754 3 H -0.009 1.009 4 C -0.514 4.514 5 H 0.085 0.915 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.253 1.253 12 N -0.448 5.448 13 C 0.026 3.974 14 C 0.366 3.634 15 N -0.364 5.364 16 N -0.336 5.336 17 C 0.191 3.809 18 C 0.009 3.991 19 C -0.166 4.166 20 C -0.186 4.186 21 C -0.153 4.153 22 N -0.473 5.473 23 C 0.183 3.817 24 C -0.047 4.047 25 C -0.039 4.039 26 N -0.309 5.309 27 N -0.115 5.115 28 N -0.261 5.261 29 C 0.074 3.926 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.028 0.972 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.171 0.829 46 H 0.223 0.777 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -10.796 21.342 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.009 0.991 4 C -0.553 4.553 5 H 0.103 0.897 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.176 1.176 12 N -0.171 5.171 13 C -0.121 4.121 14 C 0.008 3.992 15 N -0.206 5.206 16 N -0.173 5.173 17 C -0.078 4.078 18 C -0.030 4.030 19 C -0.185 4.185 20 C -0.223 4.223 21 C -0.190 4.190 22 N -0.169 5.169 23 C 0.060 3.940 24 C -0.181 4.181 25 C -0.199 4.199 26 N -0.172 5.172 27 N -0.095 5.095 28 N -0.055 5.055 29 C -0.066 4.066 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.188 0.812 46 H 0.239 0.761 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.291 -9.367 20.034 22.740 hybrid contribution -0.829 -0.466 -1.197 1.529 sum 4.463 -9.833 18.837 21.713 Atomic orbital electron populations 1.22293 0.99599 0.99134 1.00709 1.18830 0.90594 0.92130 0.84505 0.99069 1.21347 1.35214 1.09123 0.89583 0.89729 1.25777 0.95303 0.95374 1.02316 1.70159 1.43998 1.17913 1.24234 0.85488 0.78811 0.78329 0.78669 1.20366 1.22368 1.17611 1.59390 1.56157 1.03745 0.97857 1.22630 0.98834 0.86371 1.04237 1.23184 0.92766 0.97207 0.86032 1.74728 1.18569 1.15081 1.12263 1.73898 1.21819 1.23820 0.97768 1.25380 0.94592 0.90202 0.97593 1.19816 1.01607 0.99596 0.81946 1.22022 0.99221 1.00306 0.96999 1.23313 0.92237 1.02907 1.03796 1.23080 1.01611 1.01003 0.93277 1.46354 1.33036 1.30910 1.06649 1.20590 0.77416 0.89631 1.06411 1.22488 0.98452 1.07638 0.89550 1.24456 0.91033 1.00425 1.04001 1.75047 1.22553 1.19039 1.00540 1.78282 1.06220 1.09770 1.15183 1.47498 1.11189 1.32105 1.14721 1.22707 1.03494 0.95811 0.84620 0.93340 0.94154 0.94282 0.93198 0.95319 0.88239 0.89282 0.86996 0.85787 0.91403 0.85393 0.89401 0.89015 0.85974 0.85579 0.81206 0.76119 0.89280 0.86917 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 8.44 71.98 0.61 -7.25 16 2 C 0.25 11.99 1.95 44.17 0.09 12.08 16 3 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 4 C -0.51 -25.28 7.98 25.60 0.20 -25.08 16 5 H 0.08 3.71 6.57 -2.91 -0.02 3.69 16 6 C 0.01 0.61 5.22 84.65 0.44 1.05 16 7 N -0.92 -53.82 11.94 21.45 0.26 -53.57 16 8 Si 0.96 41.10 29.54 68.60 2.03 43.12 16 9 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.30 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 12 N -0.45 -16.45 3.11 -711.01 -2.21 -18.67 16 13 C 0.03 0.72 7.98 127.69 1.02 1.74 16 14 C 0.37 13.58 6.68 260.11 1.74 15.31 16 15 N -0.36 -16.27 8.99 -58.00 -0.52 -16.79 16 16 N -0.34 -13.13 12.18 -49.54 -0.60 -13.73 16 17 C 0.19 5.26 7.27 137.64 1.00 6.26 16 18 C 0.01 0.15 5.93 29.85 0.18 0.32 16 19 C -0.17 -2.84 5.73 -10.79 -0.06 -2.91 16 20 C -0.19 -2.22 7.40 30.62 0.23 -2.00 16 21 C -0.15 -1.74 10.25 30.62 0.31 -1.43 16 22 N -0.47 -12.54 2.79 -518.92 -1.45 -13.98 16 23 C 0.18 2.95 6.29 85.63 0.54 3.49 16 24 C -0.05 -1.07 6.58 41.36 0.27 -0.79 16 25 C -0.04 -0.94 11.99 83.73 1.00 0.06 16 26 N -0.31 -9.81 12.41 -58.25 -0.72 -10.54 16 27 N -0.12 -3.81 13.17 37.02 0.49 -3.32 16 28 N -0.26 -7.12 3.74 -355.73 -1.33 -8.45 16 29 C 0.07 1.70 10.46 127.77 1.34 3.04 16 30 H 0.05 2.47 5.52 -2.39 -0.01 2.46 16 31 H 0.04 2.25 6.61 -2.39 -0.02 2.23 16 32 H 0.04 1.75 6.14 -2.39 -0.01 1.74 16 33 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 34 H 0.03 0.90 6.19 -2.39 -0.01 0.88 16 35 H 0.10 2.75 6.44 -2.39 -0.02 2.73 16 36 H 0.09 1.65 5.60 -2.39 -0.01 1.64 16 37 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.12 0.80 6.69 -2.39 -0.02 0.79 16 39 H 0.07 1.76 8.05 -2.39 -0.02 1.74 16 40 H 0.13 0.77 7.31 -2.39 -0.02 0.76 16 41 H 0.09 1.32 7.96 -2.39 -0.02 1.30 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.13 1.55 4.71 -2.39 -0.01 1.54 16 45 H 0.17 1.01 6.95 -2.39 -0.02 0.99 16 46 H 0.22 3.71 3.48 -2.91 -0.01 3.70 16 47 H 0.09 2.78 7.32 -2.39 -0.02 2.77 16 48 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.12 2.03 5.90 -2.39 -0.01 2.01 16 Total: -1.00 -80.60 379.76 5.84 -74.76 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.01 Total: 17.23 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 8.90 Total: 3.92 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -6.10 Total: -139.04 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -80.60 5.84 -74.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390910614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 291.380 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds