Wall clock time and date at job start Wed Apr 1 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47300 * 2 1 4 4 N 1.30293 * 126.35233 * 90.01940 * 3 2 1 5 5 N 1.28528 * 110.05593 * 179.97438 * 4 3 2 6 6 C 1.31210 * 109.86136 * 0.02562 * 5 4 3 7 7 N 1.38586 * 126.47393 * 179.97438 * 6 5 4 8 8 C 1.46837 * 111.00107 * 35.59927 * 7 6 5 9 9 C 1.53032 * 109.52426 * 174.16347 * 8 7 6 10 10 C 1.53115 * 109.27754 * 59.17941 * 9 8 7 11 11 C 1.50701 * 109.52499 * 182.44107 * 10 9 8 12 12 H 1.08005 * 120.00305 * 119.67939 * 11 10 9 13 13 C 1.37880 * 119.99881 * 299.68616 * 11 10 9 14 14 N 1.31510 * 120.00047 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47169 * 119.99686 * 15 13 11 18 18 H 1.48499 * 109.46929 * 239.99641 * 15 13 11 19 19 C 1.53118 * 109.16187 * 302.34445 * 10 9 8 20 20 C 1.46847 * 110.99401 * 271.38942 * 7 6 5 21 21 N 1.36457 * 107.05341 * 0.22644 * 6 5 4 22 22 C 1.46500 * 127.13636 * 179.77569 * 21 6 5 23 23 C 1.50701 * 109.47154 * 87.80170 * 22 21 6 24 24 N 1.33243 * 125.52683 * 269.69315 * 23 22 21 25 25 C 1.30835 * 109.83022 * 179.85585 * 24 23 22 26 26 N 1.34431 * 108.07335 * 0.40105 * 25 24 23 27 27 C 1.46501 * 126.82049 * 179.78823 * 26 25 24 28 28 N 1.30712 * 125.52748 * 90.00013 * 23 22 21 29 29 H 1.09004 * 109.46895 * 60.00694 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47425 * 300.00388 * 1 2 3 32 32 H 1.08998 * 109.47425 * 239.99612 * 2 1 3 33 33 H 1.09002 * 109.46856 * 119.99857 * 2 1 3 34 34 H 1.09010 * 109.46312 * 294.18137 * 8 7 6 35 35 H 1.09002 * 109.46310 * 54.14334 * 8 7 6 36 36 H 1.09008 * 109.50639 * 179.11876 * 9 8 7 37 37 H 1.09002 * 109.50451 * 299.23744 * 9 8 7 38 38 H 1.09002 * 109.52713 * 62.25029 * 10 9 8 39 39 H 0.97005 * 119.99848 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.50625 * 297.71710 * 19 10 9 41 41 H 1.08999 * 109.50689 * 177.59396 * 19 10 9 42 42 H 1.09001 * 109.46479 * 305.85571 * 20 7 6 43 43 H 1.08996 * 109.46022 * 65.82241 * 20 7 6 44 44 H 1.09000 * 109.47261 * 207.80195 * 22 21 6 45 45 H 1.08996 * 109.47310 * 327.80485 * 22 21 6 46 46 H 1.07999 * 125.96038 * 180.12738 * 25 24 23 47 47 H 1.08994 * 109.47329 * 269.98332 * 27 26 25 48 48 H 1.09001 * 109.47023 * 29.99052 * 27 26 25 49 49 H 1.09000 * 109.46964 * 149.98489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2901 2.1488 1.0494 5 7 2.7018 3.3117 0.6887 6 6 2.7284 3.3888 -0.6209 7 7 3.1159 4.4859 -1.3738 8 6 4.2178 5.2072 -0.7243 9 6 4.7150 6.3210 -1.6485 10 6 3.5603 7.2801 -1.9509 11 6 4.0282 8.3456 -2.9084 12 1 3.5516 8.4531 -3.8716 13 6 5.0649 9.1831 -2.5549 14 7 5.6451 9.0524 -1.3820 15 14 5.6454 10.5033 -3.7422 16 1 4.8352 10.4420 -4.9852 17 1 5.4871 11.8391 -3.1130 18 1 7.0755 10.2780 -4.0723 19 6 2.4073 6.4952 -2.5824 20 6 1.9769 5.3763 -1.6311 21 7 2.2969 2.1868 -1.1014 22 6 2.1511 1.7966 -2.5059 23 6 3.4556 1.2346 -3.0093 24 7 4.4323 1.9379 -3.5810 25 6 5.4240 1.1449 -3.8967 26 7 5.0898 -0.1056 -3.5337 27 6 5.8999 -1.3147 -3.7015 28 7 3.8102 -0.0226 -2.9609 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8658 5.6417 0.2114 35 1 5.0339 4.5146 -0.5185 36 1 5.5224 6.8662 -1.1597 37 1 5.0799 5.8860 -2.5790 38 1 3.2207 7.7447 -1.0252 39 1 6.3742 9.6419 -1.1332 40 1 2.7359 6.0629 -3.5275 41 1 1.5659 7.1648 -2.7608 42 1 1.1655 4.8066 -2.0840 43 1 1.6355 5.8100 -0.6912 44 1 1.3715 1.0398 -2.5937 45 1 1.8785 2.6694 -3.0991 46 1 6.3477 1.4423 -4.3707 47 1 5.6777 -1.7698 -4.6666 48 1 6.9571 -1.0526 -3.6581 49 1 5.6677 -2.0211 -2.9046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395944586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:42 Heat of formation + Delta-G solvation = 177.027014 kcal Electronic energy + Delta-G solvation = -31331.338440 eV Core-core repulsion = 27332.065108 eV Total energy + Delta-G solvation = -3999.273332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84351 -42.21838 -38.23391 -35.75100 -34.44760 -34.01173 -33.24910 -31.56553 -31.24984 -29.83640 -28.86644 -28.45232 -26.50843 -25.61591 -24.09049 -22.66406 -22.31088 -22.13835 -21.48499 -20.59386 -20.16803 -18.47624 -17.49770 -17.05229 -16.48732 -16.16161 -16.02677 -15.78339 -15.38654 -14.70428 -14.52541 -14.28902 -14.20267 -13.99109 -13.53994 -13.48640 -13.26152 -12.84865 -12.70868 -12.63082 -12.46000 -12.28101 -12.09509 -11.89698 -11.52037 -11.42378 -11.27791 -10.97874 -10.83158 -10.51433 -10.30104 -10.27428 -10.18597 -10.09873 -10.03971 -9.99566 -9.85053 -9.43168 -9.02155 -8.94997 -8.64593 -8.25957 -7.93986 -5.92703 -3.97917 1.24277 1.81679 2.07586 2.23536 2.94654 3.08489 3.33609 3.41783 3.45474 3.81122 4.06601 4.16187 4.33227 4.47676 4.49101 4.53236 4.68870 4.79422 4.95087 5.02298 5.07468 5.15892 5.28549 5.37516 5.41530 5.45118 5.62520 5.72798 5.83967 5.89617 5.95545 6.02395 6.05366 6.10908 6.16206 6.26209 6.36293 6.51330 6.59058 6.60521 6.76961 6.85128 7.03764 7.15650 7.46297 7.51939 7.74403 7.84082 7.87063 8.08531 8.18021 8.51487 9.00749 9.05667 9.66287 11.13633 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.003372 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.283769 B = 8302.186480 C = 9885.624384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.173 3.827 4 N -0.287 5.287 5 N -0.321 5.321 6 C 0.379 3.621 7 N -0.452 5.452 8 C 0.078 3.922 9 C -0.102 4.102 10 C 0.047 3.953 11 C -0.508 4.508 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.104 4.104 20 C 0.070 3.930 21 N -0.471 5.471 22 C 0.215 3.785 23 C 0.205 3.795 24 N -0.503 5.503 25 C 0.256 3.744 26 N -0.384 5.384 27 C 0.097 3.903 28 N -0.305 5.305 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.222 0.778 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -23.793 -5.183 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.095 4.095 4 N -0.127 5.127 5 N -0.164 5.164 6 C 0.023 3.977 7 N -0.178 5.178 8 C -0.048 4.048 9 C -0.140 4.140 10 C 0.029 3.971 11 C -0.546 4.546 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.142 4.142 20 C -0.057 4.057 21 N -0.166 5.166 22 C 0.088 3.912 23 C -0.079 4.079 24 N -0.229 5.229 25 C -0.041 4.041 26 N -0.175 5.175 27 C -0.045 4.045 28 N -0.136 5.136 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.131 0.869 45 H 0.144 0.856 46 H 0.238 0.762 47 H 0.099 0.901 48 H 0.112 0.888 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.794 -23.723 -3.861 24.333 hybrid contribution 0.617 0.482 -1.489 1.682 sum -3.176 -23.242 -5.350 24.060 Atomic orbital electron populations 1.21752 0.93763 1.02288 1.02654 1.19946 0.96356 0.86513 1.04473 1.24717 1.04991 0.97329 0.82464 1.73968 1.15429 0.99220 1.24036 1.74724 1.20662 1.12783 1.08185 1.22866 0.98144 0.88074 0.88606 1.58900 1.09672 1.06090 1.43158 1.22257 0.89837 0.95723 0.96964 1.21717 1.01617 0.93120 0.97535 1.18708 0.90218 0.92281 0.95940 1.21200 1.16699 1.14803 1.01936 0.92646 1.24965 0.96568 0.97362 0.95108 1.69884 1.24386 1.38558 1.20100 0.86591 0.78511 0.81842 0.81352 1.19857 1.21199 1.21158 1.21708 0.99979 0.94575 0.97899 1.22245 0.89975 0.93694 0.99780 1.46181 1.51659 1.11677 1.07122 1.19749 0.90163 1.02177 0.79086 1.24018 0.97530 0.87607 0.98698 1.70568 1.00868 1.33151 1.18300 1.26223 1.00121 0.80561 0.97224 1.50440 1.13110 1.09041 1.44939 1.21963 0.94034 0.84722 1.03788 1.77913 0.95380 1.19913 1.20347 0.92776 0.91472 0.91738 0.89809 0.88607 0.93737 0.92667 0.88432 0.93405 0.95782 0.93136 0.92003 0.92508 0.92621 0.94118 0.86941 0.85574 0.76192 0.90112 0.88763 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.03 -0.34 6.12 -27.89 -0.17 -0.51 16 3 C 0.17 2.59 7.32 -154.02 -1.13 1.47 16 4 N -0.29 -5.39 12.18 32.99 0.40 -4.99 16 5 N -0.32 -6.63 11.68 30.32 0.35 -6.28 16 6 C 0.38 7.11 6.72 -318.87 -2.14 4.97 16 7 N -0.45 -8.74 4.67 -174.55 -0.82 -9.56 16 8 C 0.08 1.69 5.08 -3.84 -0.02 1.67 16 9 C -0.10 -2.43 5.12 -26.66 -0.14 -2.56 16 10 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 11 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 12 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 14 N -0.89 -25.40 11.37 55.43 0.63 -24.77 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.10 -2.13 5.32 -26.65 -0.14 -2.27 16 20 C 0.07 1.30 5.40 -3.83 -0.02 1.28 16 21 N -0.47 -7.22 2.79 -115.37 -0.32 -7.54 16 22 C 0.21 2.65 6.54 -5.19 -0.03 2.62 16 23 C 0.21 2.78 7.72 -156.85 -1.21 1.57 16 24 N -0.50 -7.33 11.19 -11.97 -0.13 -7.46 16 25 C 0.26 2.70 12.66 -90.65 -1.15 1.55 16 26 N -0.38 -3.72 4.04 -69.44 -0.28 -4.00 16 27 C 0.10 0.43 11.53 59.85 0.69 1.12 16 28 N -0.31 -3.76 12.70 32.42 0.41 -3.35 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 1.02 8.06 -51.92 -0.42 0.60 16 35 H 0.05 1.20 8.10 -51.93 -0.42 0.77 16 36 H 0.10 2.60 6.18 -51.92 -0.32 2.28 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 1.02 7.78 -51.93 -0.40 0.61 16 45 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 46 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -35.60 402.98 -12.24 -47.84 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.85 Total: -0.69 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -5.68 Total: -1.49 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.25 Total: -67.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.60 -12.24 -47.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395944586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.868 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds