Wall clock time and date at job start Wed Apr 1 2020 03:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47300 * 2 1 4 4 N 1.30293 * 126.35233 * 90.01940 * 3 2 1 5 5 N 1.28528 * 110.05593 * 179.97438 * 4 3 2 6 6 C 1.31210 * 109.86136 * 0.02562 * 5 4 3 7 7 N 1.38586 * 126.47393 * 179.97438 * 6 5 4 8 8 C 1.46837 * 111.00107 * 35.59927 * 7 6 5 9 9 C 1.53032 * 109.52426 * 174.16347 * 8 7 6 10 10 C 1.53115 * 109.27754 * 59.17941 * 9 8 7 11 11 C 1.50701 * 109.52499 * 182.44107 * 10 9 8 12 12 H 1.08005 * 120.00305 * 119.67939 * 11 10 9 13 13 C 1.37880 * 119.99881 * 299.68616 * 11 10 9 14 14 N 1.31510 * 120.00047 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47169 * 119.99686 * 15 13 11 18 18 H 1.48499 * 109.46929 * 239.99641 * 15 13 11 19 19 C 1.53118 * 109.16187 * 302.34445 * 10 9 8 20 20 C 1.46847 * 110.99401 * 271.38942 * 7 6 5 21 21 N 1.36457 * 107.05341 * 0.22644 * 6 5 4 22 22 C 1.46500 * 127.13636 * 179.77569 * 21 6 5 23 23 C 1.50701 * 109.47154 * 87.80170 * 22 21 6 24 24 N 1.33243 * 125.52683 * 269.69315 * 23 22 21 25 25 C 1.30835 * 109.83022 * 179.85585 * 24 23 22 26 26 N 1.34431 * 108.07335 * 0.40105 * 25 24 23 27 27 C 1.46501 * 126.82049 * 179.78823 * 26 25 24 28 28 N 1.30712 * 125.52748 * 90.00013 * 23 22 21 29 29 H 1.09004 * 109.46895 * 60.00694 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47425 * 300.00388 * 1 2 3 32 32 H 1.08998 * 109.47425 * 239.99612 * 2 1 3 33 33 H 1.09002 * 109.46856 * 119.99857 * 2 1 3 34 34 H 1.09010 * 109.46312 * 294.18137 * 8 7 6 35 35 H 1.09002 * 109.46310 * 54.14334 * 8 7 6 36 36 H 1.09008 * 109.50639 * 179.11876 * 9 8 7 37 37 H 1.09002 * 109.50451 * 299.23744 * 9 8 7 38 38 H 1.09002 * 109.52713 * 62.25029 * 10 9 8 39 39 H 0.97005 * 119.99848 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.50625 * 297.71710 * 19 10 9 41 41 H 1.08999 * 109.50689 * 177.59396 * 19 10 9 42 42 H 1.09001 * 109.46479 * 305.85571 * 20 7 6 43 43 H 1.08996 * 109.46022 * 65.82241 * 20 7 6 44 44 H 1.09000 * 109.47261 * 207.80195 * 22 21 6 45 45 H 1.08996 * 109.47310 * 327.80485 * 22 21 6 46 46 H 1.07999 * 125.96038 * 180.12738 * 25 24 23 47 47 H 1.08994 * 109.47329 * 269.98332 * 27 26 25 48 48 H 1.09001 * 109.47023 * 29.99052 * 27 26 25 49 49 H 1.09000 * 109.46964 * 149.98489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2901 2.1488 1.0494 5 7 2.7018 3.3117 0.6887 6 6 2.7284 3.3888 -0.6209 7 7 3.1159 4.4859 -1.3738 8 6 4.2178 5.2072 -0.7243 9 6 4.7150 6.3210 -1.6485 10 6 3.5603 7.2801 -1.9509 11 6 4.0282 8.3456 -2.9084 12 1 3.5516 8.4531 -3.8716 13 6 5.0649 9.1831 -2.5549 14 7 5.6451 9.0524 -1.3820 15 14 5.6454 10.5033 -3.7422 16 1 4.8352 10.4420 -4.9852 17 1 5.4871 11.8391 -3.1130 18 1 7.0755 10.2780 -4.0723 19 6 2.4073 6.4952 -2.5824 20 6 1.9769 5.3763 -1.6311 21 7 2.2969 2.1868 -1.1014 22 6 2.1511 1.7966 -2.5059 23 6 3.4556 1.2346 -3.0093 24 7 4.4323 1.9379 -3.5810 25 6 5.4240 1.1449 -3.8967 26 7 5.0898 -0.1056 -3.5337 27 6 5.8999 -1.3147 -3.7015 28 7 3.8102 -0.0226 -2.9609 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8658 5.6417 0.2114 35 1 5.0339 4.5146 -0.5185 36 1 5.5224 6.8662 -1.1597 37 1 5.0799 5.8860 -2.5790 38 1 3.2207 7.7447 -1.0252 39 1 6.3742 9.6419 -1.1332 40 1 2.7359 6.0629 -3.5275 41 1 1.5659 7.1648 -2.7608 42 1 1.1655 4.8066 -2.0840 43 1 1.6355 5.8100 -0.6912 44 1 1.3715 1.0398 -2.5937 45 1 1.8785 2.6694 -3.0991 46 1 6.3477 1.4423 -4.3707 47 1 5.6777 -1.7698 -4.6666 48 1 6.9571 -1.0526 -3.6581 49 1 5.6677 -2.0211 -2.9046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395944586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:41 Heat of formation + Delta-G solvation = 157.636771 kcal Electronic energy + Delta-G solvation = -31332.179264 eV Core-core repulsion = 27332.065108 eV Total energy + Delta-G solvation = -4000.114156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.12653 -43.07466 -39.91562 -36.80914 -36.00842 -34.96506 -34.42635 -33.10804 -32.40716 -31.61538 -29.84905 -29.70480 -27.62721 -27.12065 -25.06298 -24.38436 -23.85229 -23.09065 -22.60315 -21.96350 -21.24599 -20.28500 -18.59220 -18.36180 -18.03511 -17.49328 -17.20194 -16.69689 -16.48084 -16.23536 -15.72325 -15.68938 -15.21448 -15.06378 -14.87803 -14.57280 -14.37095 -14.18482 -14.04225 -13.94106 -13.68796 -13.42077 -13.23066 -12.94974 -12.80099 -12.77029 -12.76677 -12.43839 -12.35489 -12.18059 -12.09526 -11.95215 -11.62435 -11.47029 -11.34396 -11.02067 -10.88509 -10.86608 -10.74176 -10.60115 -10.38539 -10.31586 -9.48155 -8.03558 -6.16654 0.35928 0.64583 1.13995 1.40476 1.44054 1.45974 1.57329 1.72323 1.94424 2.47958 2.73512 3.00117 3.24095 3.29191 3.33114 3.75177 3.87770 3.92059 3.94369 4.12290 4.13925 4.23766 4.31083 4.42045 4.43273 4.45641 4.49226 4.53216 4.57893 4.67900 4.68814 4.73590 4.88159 4.90768 4.99634 5.02474 5.09864 5.16101 5.22487 5.26172 5.26686 5.32457 5.51374 5.61365 5.67632 5.78105 5.85022 6.02736 6.15928 6.28118 6.42317 6.94792 7.04056 7.51264 7.65706 9.01805 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.003372 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.283769 B = 8302.186480 C = 9885.624384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C 0.195 3.805 4 N -0.328 5.328 5 N -0.359 5.359 6 C 0.364 3.636 7 N -0.444 5.444 8 C 0.097 3.903 9 C -0.085 4.085 10 C 0.044 3.956 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.091 4.091 20 C 0.076 3.924 21 N -0.462 5.462 22 C 0.210 3.790 23 C 0.188 3.812 24 N -0.555 5.555 25 C 0.254 3.746 26 N -0.378 5.378 27 C 0.088 3.912 28 N -0.315 5.315 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.041 0.959 38 H -0.011 1.011 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.149 0.851 45 H 0.125 0.875 46 H 0.257 0.743 47 H 0.100 0.900 48 H 0.121 0.879 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -26.346 -7.308 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.073 4.073 4 N -0.167 5.167 5 N -0.202 5.202 6 C 0.006 3.994 7 N -0.169 5.169 8 C -0.030 4.030 9 C -0.123 4.123 10 C 0.026 3.974 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.780 3.220 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.129 4.129 20 C -0.051 4.051 21 N -0.157 5.157 22 C 0.085 3.915 23 C -0.095 4.095 24 N -0.282 5.282 25 C -0.042 4.042 26 N -0.169 5.169 27 C -0.052 4.052 28 N -0.147 5.147 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.007 0.993 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.044 0.956 44 H 0.166 0.834 45 H 0.143 0.857 46 H 0.272 0.728 47 H 0.119 0.881 48 H 0.139 0.861 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.367 -26.324 -6.007 27.351 hybrid contribution 0.839 1.117 -0.836 1.628 sum -3.528 -25.207 -6.843 26.357 Atomic orbital electron populations 1.21737 0.91825 1.04107 1.02226 1.20223 0.97797 0.83383 1.05597 1.25647 1.01888 0.98318 0.81456 1.73895 1.17690 0.99303 1.25764 1.74609 1.21740 1.14300 1.09541 1.22671 0.99545 0.88793 0.88383 1.58813 1.09254 1.06123 1.42714 1.21856 0.90695 0.94940 0.95501 1.21409 1.00515 0.93311 0.97082 1.18666 0.91895 0.92513 0.94342 1.21551 1.16880 1.15565 1.02313 0.92450 1.25757 0.96776 0.99546 0.96650 1.70038 1.24762 1.39394 1.21754 0.85566 0.78048 0.78915 0.79468 1.18848 1.21060 1.20785 1.21528 0.98638 0.94845 0.97911 1.22195 0.90585 0.93498 0.98783 1.46290 1.50535 1.10333 1.08518 1.20077 0.91139 1.03232 0.77036 1.24079 0.97864 0.88002 0.99543 1.70500 1.02355 1.35260 1.20085 1.26851 1.00388 0.80519 0.96427 1.50749 1.12410 1.10248 1.43523 1.22392 0.94802 0.83121 1.04901 1.77798 0.96824 1.19385 1.20684 0.92206 0.88527 0.93199 0.88194 0.87863 0.95820 0.93130 0.91583 0.94061 0.99324 0.93196 0.91682 0.91406 0.89194 0.95627 0.83374 0.85712 0.72755 0.88146 0.86073 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.03 -0.54 6.12 29.85 0.18 -0.36 16 3 C 0.20 5.64 7.32 137.64 1.01 6.65 16 4 N -0.33 -12.37 12.18 -49.54 -0.60 -12.97 16 5 N -0.36 -15.23 11.68 -58.00 -0.68 -15.91 16 6 C 0.36 13.73 6.72 260.11 1.75 15.48 16 7 N -0.44 -17.41 4.67 -706.17 -3.30 -20.71 16 8 C 0.10 4.40 5.08 86.33 0.44 4.84 16 9 C -0.08 -4.23 5.12 30.64 0.16 -4.07 16 10 C 0.04 2.27 2.16 -11.46 -0.02 2.25 16 11 C -0.52 -28.98 8.56 25.60 0.22 -28.76 16 12 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.01 0.61 5.31 84.66 0.45 1.06 16 14 N -0.92 -54.18 11.37 21.45 0.24 -53.93 16 15 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 C -0.09 -3.76 5.32 30.65 0.16 -3.60 16 20 C 0.08 2.83 5.40 86.33 0.47 3.29 16 21 N -0.46 -13.68 2.79 -518.91 -1.45 -15.13 16 22 C 0.21 4.79 6.54 85.63 0.56 5.35 16 23 C 0.19 4.82 7.72 138.63 1.07 5.89 16 24 N -0.55 -15.58 11.19 -191.80 -2.15 -17.73 16 25 C 0.25 4.89 12.66 180.36 2.28 7.17 16 26 N -0.38 -6.41 4.04 -373.62 -1.51 -7.92 16 27 C 0.09 0.51 11.53 127.77 1.47 1.98 16 28 N -0.32 -7.09 12.70 -51.33 -0.65 -7.75 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.53 7.87 -2.39 -0.02 1.51 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.02 1.15 8.06 -2.38 -0.02 1.13 16 35 H 0.05 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.07 3.72 6.18 -2.38 -0.01 3.71 16 37 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 40 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.09 2.76 8.10 -2.39 -0.02 2.74 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.15 2.21 7.78 -2.39 -0.02 2.19 16 45 H 0.12 2.87 8.14 -2.39 -0.02 2.86 16 46 H 0.26 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 49 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -80.96 402.98 3.78 -77.17 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.94 Total: 12.95 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 10.91 Total: 15.97 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -10.09 Total: -152.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -80.96 3.78 -77.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395944586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.808 kcal (2) G-P(sol) polarization free energy of solvation -80.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds