Wall clock time and date at job start Wed Apr 1 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47058 * 2 1 4 4 C 1.35496 * 126.97691 * 264.68995 * 3 2 1 5 5 N 1.30523 * 107.30362 * 179.83578 * 4 3 2 6 6 N 1.28601 * 109.67299 * 0.43613 * 5 4 3 7 7 C 1.30524 * 109.67049 * 359.72220 * 6 5 4 8 8 C 1.50695 * 126.34231 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47208 * 270.04033 * 8 7 6 10 10 C 1.36745 * 127.13433 * 84.63141 * 9 8 7 11 11 C 1.50699 * 126.34721 * 0.02562 * 10 9 8 12 12 C 1.52998 * 117.49811 * 188.62066 * 11 10 9 13 13 C 1.53000 * 60.00261 * 252.51148 * 12 11 10 14 14 N 1.30294 * 107.30404 * 179.97438 * 10 9 8 15 15 N 1.28525 * 110.05527 * 359.97438 * 14 10 9 16 16 C 1.31220 * 109.86128 * 359.74423 * 15 14 10 17 17 N 1.38580 * 126.47764 * 180.26024 * 16 15 14 18 18 C 1.46889 * 111.00332 * 99.65720 * 17 16 15 19 19 C 1.46906 * 110.99774 * 335.70032 * 17 16 15 20 20 H 1.09005 * 109.46532 * 60.00229 * 19 17 16 21 21 C 1.53004 * 109.47303 * 300.00610 * 19 17 16 22 22 C 1.50699 * 109.47223 * 179.97438 * 19 17 16 23 23 H 1.08002 * 119.99505 * 5.54112 * 22 19 17 24 24 C 1.37876 * 119.99913 * 185.52855 * 22 19 17 25 25 N 1.31515 * 119.99944 * 8.60570 * 24 22 19 26 26 Si 1.86802 * 119.99663 * 188.59797 * 24 22 19 27 27 H 1.48501 * 109.46783 * 95.00281 * 26 24 22 28 28 H 1.48503 * 109.46828 * 214.99721 * 26 24 22 29 29 H 1.48494 * 109.47546 * 334.99793 * 26 24 22 30 30 H 1.08998 * 109.47034 * 300.00188 * 1 2 3 31 31 H 1.09003 * 109.47440 * 59.99759 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47346 * 119.99840 * 2 1 3 34 34 H 1.08996 * 109.46766 * 240.00532 * 2 1 3 35 35 H 1.07997 * 126.34840 * 359.97157 * 4 3 2 36 36 H 1.09002 * 109.47376 * 30.04522 * 8 7 6 37 37 H 1.08999 * 109.46851 * 150.04345 * 8 7 6 38 38 H 1.08999 * 115.55151 * 334.33567 * 11 10 9 39 39 H 1.08997 * 117.49973 * 0.02562 * 12 11 10 40 40 H 1.09000 * 117.49588 * 145.02338 * 12 11 10 41 41 H 1.08997 * 117.49674 * 252.51327 * 13 12 11 42 42 H 1.09002 * 117.51896 * 107.47876 * 13 12 11 43 43 H 1.08998 * 109.47373 * 63.54879 * 18 17 16 44 44 H 1.09002 * 109.47544 * 183.54614 * 18 17 16 45 45 H 1.08998 * 109.47283 * 303.54956 * 18 17 16 46 46 H 1.08996 * 109.46925 * 304.51593 * 21 19 17 47 47 H 1.09000 * 109.47377 * 64.51479 * 21 19 17 48 48 H 1.09003 * 109.46508 * 184.51834 * 21 19 17 49 49 H 0.97001 * 119.99425 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3845 2.1163 -1.0778 5 7 2.7524 3.2898 -0.6406 6 7 2.6468 3.3271 0.6405 7 6 2.2010 2.1811 1.0782 8 6 1.9389 1.8153 2.5164 9 7 3.1514 1.2388 3.1025 10 6 4.2039 1.9155 3.6541 11 6 4.3384 3.4115 3.7764 12 6 5.6865 3.9637 4.2438 13 6 4.4796 3.9953 5.1836 14 7 5.0685 1.0270 4.0552 15 7 4.6370 -0.1558 3.7971 16 6 3.4618 -0.0850 3.2175 17 7 2.6844 -1.1528 2.7980 18 6 1.6287 -1.4512 3.7748 19 6 3.5132 -2.3380 2.5399 20 1 4.0344 -2.6228 3.4540 21 6 4.5363 -2.0171 1.4484 22 6 2.6352 -3.4761 2.0874 23 1 1.5823 -3.3098 1.9141 24 6 3.1762 -4.7295 1.8944 25 7 4.4141 -4.9755 2.2645 26 14 2.1509 -6.0783 1.1077 27 1 2.4272 -6.1230 -0.3507 28 1 2.5010 -7.3860 1.7181 29 1 0.7097 -5.7981 1.3302 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 2.3718 1.7920 -2.1079 36 1 1.6557 2.7088 3.0728 37 1 1.1302 1.0860 2.5641 38 1 3.7820 3.9951 3.0430 39 1 6.4763 3.2450 4.4623 40 1 6.0174 4.9108 3.8176 41 1 4.0166 4.9631 5.3757 42 1 4.4749 3.2973 6.0209 43 1 0.9507 -0.6009 3.8482 44 1 1.0733 -2.3318 3.4519 45 1 2.0786 -1.6424 4.7490 46 1 4.0184 -1.6554 0.5601 47 1 5.2217 -1.2493 1.8072 48 1 5.0974 -2.9180 1.2003 49 1 4.7945 -5.8575 2.1290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411808245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:49 Heat of formation + Delta-G solvation = 207.313661 kcal Electronic energy + Delta-G solvation = -32557.541355 eV Core-core repulsion = 28559.581350 eV Total energy + Delta-G solvation = -3997.960004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.25201 -42.53986 -37.60457 -36.72864 -35.88574 -35.09655 -32.95235 -31.04590 -30.67297 -29.61567 -29.28039 -27.36526 -25.67090 -24.58505 -24.21427 -23.70652 -22.42483 -22.32371 -21.83163 -21.07544 -20.02510 -19.29841 -17.46201 -16.98503 -16.51736 -16.34363 -15.78413 -15.62208 -15.35279 -15.16522 -14.86410 -14.60948 -14.35814 -13.86381 -13.62338 -13.43121 -13.23729 -13.01730 -12.54584 -12.33007 -12.26906 -12.00646 -11.55387 -11.49350 -11.43776 -11.33993 -11.16195 -11.10268 -10.85103 -10.78211 -10.59198 -10.48506 -10.46444 -10.41699 -10.28939 -10.20072 -10.06880 -9.95239 -9.36559 -9.25146 -8.75968 -8.52079 -7.67435 -6.21009 -4.26923 1.52418 2.00599 2.46028 2.52060 2.94596 3.16898 3.21289 3.24808 3.26328 3.93209 4.04950 4.16959 4.29903 4.39188 4.41636 4.58081 4.68731 4.82913 4.89199 4.95079 4.98371 5.12549 5.15039 5.22664 5.30342 5.41412 5.51312 5.61753 5.64294 5.73167 5.85981 5.86766 5.92673 5.96239 6.04120 6.15205 6.17864 6.24758 6.26604 6.41110 6.68963 6.74655 6.78444 6.85688 7.01094 7.27621 7.44345 7.57506 7.71584 7.96700 8.26056 8.63877 8.75967 9.22022 9.37816 10.87445 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.004592 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.995861 B = 6096.637083 C = 7721.658221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 N -0.448 5.448 4 C 0.155 3.845 5 N -0.300 5.300 6 N -0.278 5.278 7 C 0.149 3.851 8 C 0.207 3.793 9 N -0.479 5.479 10 C 0.205 3.795 11 C -0.081 4.081 12 C -0.149 4.149 13 C -0.161 4.161 14 N -0.286 5.286 15 N -0.305 5.305 16 C 0.375 3.625 17 N -0.468 5.468 18 C 0.037 3.963 19 C 0.227 3.773 20 H 0.035 0.965 21 C -0.126 4.126 22 C -0.523 4.523 23 H 0.065 0.935 24 C 0.069 3.931 25 N -0.878 5.878 26 Si 0.895 3.105 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.217 0.783 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.101 0.899 45 H 0.033 0.967 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.074 0.926 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 13.311 -1.133 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.052 4.052 3 N -0.137 5.137 4 C -0.133 4.133 5 N -0.141 5.141 6 N -0.121 5.121 7 C -0.119 4.119 8 C 0.080 3.920 9 N -0.176 5.176 10 C -0.062 4.062 11 C -0.102 4.102 12 C -0.187 4.187 13 C -0.200 4.200 14 N -0.125 5.125 15 N -0.148 5.148 16 C 0.020 3.980 17 N -0.194 5.194 18 C -0.110 4.110 19 C 0.123 3.877 20 H 0.053 0.947 21 C -0.185 4.185 22 C -0.561 4.561 23 H 0.084 0.916 24 C -0.135 4.135 25 N -0.514 5.514 26 Si 0.722 3.278 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.093 0.907 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.089 13.987 -0.969 15.711 hybrid contribution -1.791 -1.984 -0.849 2.805 sum -8.880 12.003 -1.818 15.041 Atomic orbital electron populations 1.22091 0.93695 1.03921 1.02187 1.22671 0.95910 0.77660 1.08976 1.46426 1.46414 1.14431 1.06413 1.26450 1.01829 0.89655 0.95326 1.74226 1.19183 1.17571 1.03092 1.74156 1.16083 1.18136 1.03693 1.24605 1.05603 0.89584 0.92118 1.19817 0.86052 1.01263 0.84853 1.46136 1.17534 1.06440 1.47488 1.23594 0.86023 0.95579 1.01016 1.20112 1.04407 0.85744 0.99911 1.22965 0.91308 1.02514 1.01946 1.23049 1.02351 1.02151 0.92437 1.73958 1.23555 0.95145 1.19853 1.74809 1.09039 1.14286 1.16640 1.23039 0.93727 0.83661 0.97615 1.59180 1.13698 1.06368 1.40133 1.22373 0.93329 1.01735 0.93563 1.19375 0.90113 0.82224 0.96001 0.94708 1.21753 0.98366 1.00567 0.97795 1.20947 0.95141 0.92663 1.47348 0.91649 1.24902 0.95147 0.98269 0.95221 1.69991 1.14134 1.22450 1.44864 0.86548 0.80308 0.81345 0.79572 1.20652 1.21198 1.19787 0.92247 0.92432 0.89516 0.83889 0.88343 0.76648 0.85983 0.86683 0.85273 0.87396 0.88097 0.88098 0.88378 0.93696 0.88030 0.94820 0.95756 0.95882 0.90716 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.07 0.83 6.54 -4.04 -0.03 0.81 16 3 N -0.45 -5.84 2.75 -115.30 -0.32 -6.16 16 4 C 0.16 1.97 12.74 -89.94 -1.15 0.83 16 5 N -0.30 -4.68 12.21 29.69 0.36 -4.32 16 6 N -0.28 -4.37 12.17 32.79 0.40 -3.97 16 7 C 0.15 2.10 7.61 -154.99 -1.18 0.92 16 8 C 0.21 2.58 6.24 -5.20 -0.03 2.55 16 9 N -0.48 -7.75 2.79 -115.37 -0.32 -8.07 16 10 C 0.20 3.47 7.59 -154.01 -1.17 2.30 16 11 C -0.08 -1.07 5.97 -91.77 -0.55 -1.62 16 12 C -0.15 -1.76 10.15 -26.73 -0.27 -2.03 16 13 C -0.16 -1.72 10.23 -26.73 -0.27 -1.99 16 14 N -0.29 -5.84 11.79 32.99 0.39 -5.45 16 15 N -0.31 -6.81 10.23 30.31 0.31 -6.50 16 16 C 0.37 7.23 5.99 -318.87 -1.91 5.32 16 17 N -0.47 -8.77 2.22 -176.08 -0.39 -9.16 16 18 C 0.04 0.61 9.29 60.06 0.56 1.17 16 19 C 0.23 5.26 1.60 -68.86 -0.11 5.15 16 20 H 0.04 0.96 7.84 -51.93 -0.41 0.56 16 21 C -0.13 -3.00 8.83 37.16 0.33 -2.67 16 22 C -0.52 -12.42 7.61 -34.44 -0.26 -12.68 16 23 H 0.07 1.46 6.68 -52.49 -0.35 1.11 16 24 C 0.07 1.72 5.18 -17.82 -0.09 1.63 16 25 N -0.88 -23.78 12.12 55.43 0.67 -23.11 16 26 Si 0.89 19.30 29.55 -169.99 -5.02 14.28 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 30 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.14 2.12 5.45 -51.93 -0.28 1.84 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.22 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.12 1.25 6.53 -51.93 -0.34 0.91 16 38 H 0.13 1.65 8.10 -51.93 -0.42 1.23 16 39 H 0.11 1.45 7.92 -51.93 -0.41 1.04 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.58 7.12 -51.93 -0.37 0.21 16 44 H 0.10 1.69 6.10 -51.93 -0.32 1.37 16 45 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.55 6.51 -51.93 -0.34 0.22 16 48 H 0.07 1.94 6.78 -51.93 -0.35 1.59 16 49 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -31.74 399.36 -11.01 -42.75 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.35 Total: 5.12 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -5.75 Total: -1.44 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: 1.10 Total: -66.73 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.74 -11.01 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411808245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.064 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds