Wall clock time and date at job start Wed Apr 1 2020 03:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47058 * 2 1 4 4 C 1.35496 * 126.97691 * 264.68995 * 3 2 1 5 5 N 1.30523 * 107.30362 * 179.83578 * 4 3 2 6 6 N 1.28601 * 109.67299 * 0.43613 * 5 4 3 7 7 C 1.30524 * 109.67049 * 359.72220 * 6 5 4 8 8 C 1.50695 * 126.34231 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47208 * 270.04033 * 8 7 6 10 10 C 1.36745 * 127.13433 * 84.63141 * 9 8 7 11 11 C 1.50699 * 126.34721 * 0.02562 * 10 9 8 12 12 C 1.52998 * 117.49811 * 188.62066 * 11 10 9 13 13 C 1.53000 * 60.00261 * 252.51148 * 12 11 10 14 14 N 1.30294 * 107.30404 * 179.97438 * 10 9 8 15 15 N 1.28525 * 110.05527 * 359.97438 * 14 10 9 16 16 C 1.31220 * 109.86128 * 359.74423 * 15 14 10 17 17 N 1.38580 * 126.47764 * 180.26024 * 16 15 14 18 18 C 1.46889 * 111.00332 * 99.65720 * 17 16 15 19 19 C 1.46906 * 110.99774 * 335.70032 * 17 16 15 20 20 H 1.09005 * 109.46532 * 60.00229 * 19 17 16 21 21 C 1.53004 * 109.47303 * 300.00610 * 19 17 16 22 22 C 1.50699 * 109.47223 * 179.97438 * 19 17 16 23 23 H 1.08002 * 119.99505 * 5.54112 * 22 19 17 24 24 C 1.37876 * 119.99913 * 185.52855 * 22 19 17 25 25 N 1.31515 * 119.99944 * 8.60570 * 24 22 19 26 26 Si 1.86802 * 119.99663 * 188.59797 * 24 22 19 27 27 H 1.48501 * 109.46783 * 95.00281 * 26 24 22 28 28 H 1.48503 * 109.46828 * 214.99721 * 26 24 22 29 29 H 1.48494 * 109.47546 * 334.99793 * 26 24 22 30 30 H 1.08998 * 109.47034 * 300.00188 * 1 2 3 31 31 H 1.09003 * 109.47440 * 59.99759 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47346 * 119.99840 * 2 1 3 34 34 H 1.08996 * 109.46766 * 240.00532 * 2 1 3 35 35 H 1.07997 * 126.34840 * 359.97157 * 4 3 2 36 36 H 1.09002 * 109.47376 * 30.04522 * 8 7 6 37 37 H 1.08999 * 109.46851 * 150.04345 * 8 7 6 38 38 H 1.08999 * 115.55151 * 334.33567 * 11 10 9 39 39 H 1.08997 * 117.49973 * 0.02562 * 12 11 10 40 40 H 1.09000 * 117.49588 * 145.02338 * 12 11 10 41 41 H 1.08997 * 117.49674 * 252.51327 * 13 12 11 42 42 H 1.09002 * 117.51896 * 107.47876 * 13 12 11 43 43 H 1.08998 * 109.47373 * 63.54879 * 18 17 16 44 44 H 1.09002 * 109.47544 * 183.54614 * 18 17 16 45 45 H 1.08998 * 109.47283 * 303.54956 * 18 17 16 46 46 H 1.08996 * 109.46925 * 304.51593 * 21 19 17 47 47 H 1.09000 * 109.47377 * 64.51479 * 21 19 17 48 48 H 1.09003 * 109.46508 * 184.51834 * 21 19 17 49 49 H 0.97001 * 119.99425 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3845 2.1163 -1.0778 5 7 2.7524 3.2898 -0.6406 6 7 2.6468 3.3271 0.6405 7 6 2.2010 2.1811 1.0782 8 6 1.9389 1.8153 2.5164 9 7 3.1514 1.2388 3.1025 10 6 4.2039 1.9155 3.6541 11 6 4.3384 3.4115 3.7764 12 6 5.6865 3.9637 4.2438 13 6 4.4796 3.9953 5.1836 14 7 5.0685 1.0270 4.0552 15 7 4.6370 -0.1558 3.7971 16 6 3.4618 -0.0850 3.2175 17 7 2.6844 -1.1528 2.7980 18 6 1.6287 -1.4512 3.7748 19 6 3.5132 -2.3380 2.5399 20 1 4.0344 -2.6228 3.4540 21 6 4.5363 -2.0171 1.4484 22 6 2.6352 -3.4761 2.0874 23 1 1.5823 -3.3098 1.9141 24 6 3.1762 -4.7295 1.8944 25 7 4.4141 -4.9755 2.2645 26 14 2.1509 -6.0783 1.1077 27 1 2.4272 -6.1230 -0.3507 28 1 2.5010 -7.3860 1.7181 29 1 0.7097 -5.7981 1.3302 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 2.3718 1.7920 -2.1079 36 1 1.6557 2.7088 3.0728 37 1 1.1302 1.0860 2.5641 38 1 3.7820 3.9951 3.0430 39 1 6.4763 3.2450 4.4623 40 1 6.0174 4.9108 3.8176 41 1 4.0166 4.9631 5.3757 42 1 4.4749 3.2973 6.0209 43 1 0.9507 -0.6009 3.8482 44 1 1.0733 -2.3318 3.4519 45 1 2.0786 -1.6424 4.7490 46 1 4.0184 -1.6554 0.5601 47 1 5.2217 -1.2493 1.8072 48 1 5.0974 -2.9180 1.2003 49 1 4.7945 -5.8575 2.1290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411808245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:48 Heat of formation + Delta-G solvation = 193.560815 kcal Electronic energy + Delta-G solvation = -32558.137723 eV Core-core repulsion = 28559.581350 eV Total energy + Delta-G solvation = -3998.556372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.35953 -43.87749 -39.06590 -37.87645 -36.95228 -36.26658 -34.78439 -32.20514 -31.54387 -31.41809 -30.72821 -28.49732 -27.41403 -26.16137 -25.22536 -24.86948 -23.66927 -23.27152 -23.18969 -22.21695 -21.28498 -20.74673 -18.66353 -18.36369 -17.94153 -17.62519 -17.01256 -16.92162 -16.75824 -16.30322 -16.09417 -15.91170 -15.51179 -15.20858 -14.95772 -14.64322 -14.32522 -14.10766 -13.93554 -13.81348 -13.25292 -13.18458 -13.07610 -12.84663 -12.72550 -12.53719 -12.45353 -12.34726 -12.32047 -12.28296 -12.16797 -12.11998 -11.86862 -11.64803 -11.48560 -11.41238 -11.28459 -11.17100 -11.03756 -10.58946 -10.44267 -10.14814 -9.24236 -8.13573 -6.25201 0.41222 0.73099 1.30523 1.47873 1.49715 1.52905 1.59091 1.77357 1.83654 2.43130 2.90486 2.93586 3.03348 3.20086 3.28145 3.33942 3.70216 3.79276 3.81337 3.99066 4.00670 4.07559 4.11177 4.20110 4.26461 4.40307 4.50442 4.55904 4.57823 4.71874 4.72750 4.79863 4.82088 4.89366 4.92010 4.93915 4.96122 5.03926 5.08135 5.18269 5.21514 5.25126 5.30186 5.41689 5.47232 5.63406 5.78816 5.83603 5.89808 6.09439 6.52374 6.86809 7.43752 7.58773 7.77212 8.96085 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.004592 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.995861 B = 6096.637083 C = 7721.658221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 N -0.449 5.449 4 C 0.164 3.836 5 N -0.336 5.336 6 N -0.298 5.298 7 C 0.143 3.857 8 C 0.201 3.799 9 N -0.471 5.471 10 C 0.220 3.780 11 C -0.098 4.098 12 C -0.152 4.152 13 C -0.134 4.134 14 N -0.328 5.328 15 N -0.360 5.360 16 C 0.369 3.631 17 N -0.449 5.449 18 C 0.037 3.963 19 C 0.242 3.758 20 H -0.019 1.019 21 C -0.108 4.108 22 C -0.516 4.516 23 H 0.086 0.914 24 C 0.016 3.984 25 N -0.923 5.923 26 Si 0.961 3.039 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.252 1.252 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.012 0.988 46 H 0.039 0.961 47 H 0.005 0.995 48 H 0.045 0.955 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 14.952 -2.147 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.053 4.053 3 N -0.138 5.138 4 C -0.124 4.124 5 N -0.176 5.176 6 N -0.141 5.141 7 C -0.126 4.126 8 C 0.077 3.923 9 N -0.167 5.167 10 C -0.048 4.048 11 C -0.119 4.119 12 C -0.190 4.190 13 C -0.172 4.172 14 N -0.166 5.166 15 N -0.202 5.202 16 C 0.012 3.988 17 N -0.174 5.174 18 C -0.110 4.110 19 C 0.136 3.864 20 H -0.002 1.002 21 C -0.166 4.166 22 C -0.554 4.554 23 H 0.104 0.896 24 C -0.184 4.184 25 N -0.561 5.561 26 Si 0.787 3.213 27 H -0.204 1.204 28 H -0.223 1.223 29 H -0.175 1.175 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.269 0.731 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.031 0.969 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.376 15.664 -1.981 18.893 hybrid contribution -0.741 -2.391 -0.522 2.557 sum -11.117 13.273 -2.503 17.494 Atomic orbital electron populations 1.22048 0.91313 1.04588 1.03111 1.22694 0.97827 0.76857 1.07951 1.46577 1.46225 1.14689 1.06308 1.27170 0.99826 0.88765 0.96666 1.74167 1.20838 1.19295 1.03300 1.74079 1.16778 1.19168 1.04034 1.24788 1.05548 0.89484 0.92802 1.20255 0.84738 1.02902 0.84400 1.46202 1.18426 1.05036 1.47005 1.24330 0.85085 0.96831 0.98542 1.20319 1.06003 0.83319 1.02266 1.23034 0.90563 1.02832 1.02553 1.23135 1.00715 1.02982 0.90337 1.73865 1.25306 0.95258 1.22196 1.74690 1.10988 1.15883 1.18592 1.22965 0.93307 0.84846 0.97672 1.59162 1.12810 1.04623 1.40798 1.22483 0.92933 1.03757 0.91820 1.18939 0.90136 0.84123 0.93206 1.00158 1.21519 0.98062 0.98492 0.98539 1.21271 0.95938 0.92446 1.45770 0.89581 1.25763 0.96005 1.00881 0.95749 1.70166 1.16343 1.22780 1.46828 0.85489 0.79761 0.77793 0.78272 1.20446 1.22312 1.17503 0.91647 0.91225 0.88897 0.86495 0.87695 0.73075 0.83055 0.84736 0.84252 0.89727 0.85604 0.84485 0.89509 0.89319 0.87934 0.96948 0.94240 0.97609 0.93582 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.24 71.98 0.74 -1.54 16 2 C 0.07 1.45 6.54 86.38 0.56 2.02 16 3 N -0.45 -10.63 2.75 -518.71 -1.42 -12.06 16 4 C 0.16 3.77 12.74 180.11 2.29 6.07 16 5 N -0.34 -9.91 12.21 -59.99 -0.73 -10.64 16 6 N -0.30 -8.84 12.17 -50.16 -0.61 -9.45 16 7 C 0.14 3.70 7.61 137.98 1.05 4.76 16 8 C 0.20 4.51 6.24 85.63 0.53 5.05 16 9 N -0.47 -14.79 2.79 -518.92 -1.45 -16.24 16 10 C 0.22 7.42 7.59 137.64 1.04 8.46 16 11 C -0.10 -2.44 5.97 -11.54 -0.07 -2.51 16 12 C -0.15 -3.39 10.15 30.59 0.31 -3.07 16 13 C -0.13 -2.52 10.23 30.60 0.31 -2.20 16 14 N -0.33 -13.92 11.79 -49.53 -0.58 -14.50 16 15 N -0.36 -16.82 10.23 -58.00 -0.59 -17.41 16 16 C 0.37 14.40 5.99 260.11 1.56 15.96 16 17 N -0.45 -16.74 2.22 -711.00 -1.58 -18.32 16 18 C 0.04 1.16 9.29 127.69 1.19 2.35 16 19 C 0.24 11.54 1.60 44.17 0.07 11.61 16 20 H -0.02 -1.14 7.84 -2.38 -0.02 -1.15 16 21 C -0.11 -5.31 8.83 71.98 0.64 -4.68 16 22 C -0.52 -24.41 7.61 25.60 0.19 -24.22 16 23 H 0.09 3.66 6.68 -2.91 -0.02 3.64 16 24 C 0.02 0.80 5.18 84.65 0.44 1.24 16 25 N -0.92 -51.89 12.12 21.45 0.26 -51.63 16 26 Si 0.96 39.22 29.55 68.60 2.03 41.25 16 27 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.30 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 30 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 3.21 5.45 -2.39 -0.01 3.20 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.25 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.15 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.13 2.46 6.53 -2.39 -0.02 2.44 16 38 H 0.14 3.22 8.10 -2.39 -0.02 3.20 16 39 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 40 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 2.01 7.12 -2.39 -0.02 2.00 16 44 H 0.10 3.22 6.10 -2.39 -0.01 3.21 16 45 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 46 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.00 0.26 6.51 -2.39 -0.02 0.24 16 48 H 0.05 2.50 6.78 -2.39 -0.02 2.49 16 49 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.18 399.36 7.14 -67.04 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.97 Total: 22.69 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 10.86 Total: 19.27 kcal Atomic # 7 Polarization: -143.54 SS G_CDS: -6.71 Total: -150.25 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -74.18 7.14 -67.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411808245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.602 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds