Wall clock time and date at job start Wed Apr 1 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.96187 * 2 1 4 4 C 1.33234 * 109.82883 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.52534 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47281 * 89.99973 * 5 4 3 7 7 N 1.46498 * 109.47094 * 179.05560 * 6 5 4 8 8 C 1.36739 * 127.13596 * 276.07001 * 7 6 5 9 9 C 1.50705 * 126.34868 * 359.96567 * 8 7 6 10 10 C 1.52996 * 117.49989 * 188.62220 * 9 8 7 11 11 C 1.52994 * 117.49682 * 119.99733 * 9 8 7 12 12 N 1.30300 * 107.30614 * 179.83584 * 8 7 6 13 13 N 1.28530 * 110.04719 * 0.44398 * 12 8 7 14 14 C 1.31221 * 109.86487 * 359.71593 * 13 12 8 15 15 N 1.38580 * 126.47184 * 180.02562 * 14 13 12 16 16 C 1.46898 * 110.99919 * 115.43664 * 15 14 13 17 17 C 1.46895 * 110.99854 * 351.47985 * 15 14 13 18 18 H 1.09000 * 109.47884 * 309.99805 * 17 15 14 19 19 C 1.53001 * 109.47356 * 70.00345 * 17 15 14 20 20 C 1.50706 * 109.46916 * 189.99949 * 17 15 14 21 21 H 1.08003 * 119.99849 * 0.02562 * 20 17 15 22 22 C 1.37876 * 119.99849 * 180.02562 * 20 17 15 23 23 N 1.31509 * 120.00448 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99691 * 180.02562 * 22 20 17 25 25 H 1.48505 * 109.47218 * 90.00083 * 24 22 20 26 26 H 1.48506 * 109.47162 * 210.00253 * 24 22 20 27 27 H 1.48502 * 109.47336 * 330.00109 * 24 22 20 28 28 N 1.30710 * 108.94737 * 0.26335 * 4 3 2 29 29 N 1.34429 * 125.96134 * 179.97438 * 2 1 3 30 30 H 0.97004 * 126.82187 * 0.02562 * 29 2 1 31 31 H 1.09001 * 109.46986 * 90.00600 * 1 2 3 32 32 H 1.08995 * 109.47778 * 210.00168 * 1 2 3 33 33 H 1.08998 * 109.47483 * 330.01166 * 1 2 3 34 34 H 1.09003 * 109.46872 * 209.99877 * 5 4 3 35 35 H 1.09002 * 109.47156 * 329.99424 * 5 4 3 36 36 H 1.09001 * 109.46980 * 299.05805 * 6 5 4 37 37 H 1.09006 * 109.47127 * 59.05568 * 6 5 4 38 38 H 1.09001 * 115.54806 * 334.33208 * 9 8 7 39 39 H 1.09001 * 117.49981 * 359.97438 * 10 9 8 40 40 H 1.08993 * 117.50054 * 145.01882 * 10 9 8 41 41 H 1.09008 * 117.49852 * 214.97724 * 11 9 8 42 42 H 1.09002 * 117.50368 * 359.97438 * 11 9 8 43 43 H 1.08997 * 109.47007 * 66.85424 * 16 15 14 44 44 H 1.09000 * 109.46933 * 186.86212 * 16 15 14 45 45 H 1.09003 * 109.47044 * 306.85405 * 16 15 14 46 46 H 1.09005 * 109.47209 * 59.99678 * 19 17 15 47 47 H 1.08998 * 109.47354 * 179.97438 * 19 17 15 48 48 H 1.09001 * 109.46774 * 299.99936 * 19 17 15 49 49 H 0.96996 * 120.00516 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1369 1.9411 1.4425 7 7 6.2999 2.8319 1.4422 8 6 7.6148 2.4728 1.3335 9 6 8.1489 1.0708 1.1904 10 6 9.6637 0.8787 1.2870 11 6 8.9608 0.7490 -0.0658 12 7 8.3202 3.5676 1.3737 13 7 7.5469 4.5853 1.5087 14 6 6.2960 4.1916 1.5563 15 7 5.1817 5.0035 1.6956 16 6 4.3311 4.9397 0.4996 17 6 5.5729 6.3884 1.9902 18 1 6.2870 6.3970 2.8137 19 6 6.2171 7.0113 0.7500 20 6 4.3523 7.1840 2.3755 21 1 3.3830 6.7083 2.3995 22 6 4.4731 8.5193 2.6973 23 7 5.6533 9.0987 2.6676 24 14 2.9603 9.5052 3.1755 25 1 2.7611 9.4247 4.6449 26 1 3.1481 10.9239 2.7784 27 1 1.7690 8.9511 2.4834 28 7 3.6194 -0.6168 -0.0048 29 7 2.2964 -1.0881 0.0005 30 1 2.0093 -2.0147 0.0006 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5136 34 1 5.5744 1.1506 -0.5131 35 1 4.4702 2.5467 -0.5144 36 1 4.3054 2.4292 1.9509 37 1 5.3878 1.0161 1.9620 38 1 7.5144 0.2824 1.5952 39 1 10.2740 1.7663 1.4537 40 1 10.0261 -0.0362 1.7557 41 1 8.8609 -0.2513 -0.4871 42 1 9.1083 1.5511 -0.7890 43 1 3.9005 3.9422 0.4128 44 1 3.5308 5.6750 0.5834 45 1 4.9309 5.1548 -0.3847 46 1 5.5029 7.0028 -0.0735 47 1 6.5069 8.0390 0.9685 48 1 7.0998 6.4358 0.4713 49 1 5.7382 10.0382 2.8936 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454758066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:09 Heat of formation + Delta-G solvation = 189.228390 kcal Electronic energy + Delta-G solvation = -30949.370425 eV Core-core repulsion = 26950.626184 eV Total energy + Delta-G solvation = -3998.744241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.99180 -43.20480 -39.18717 -37.90280 -37.15547 -34.83117 -34.38434 -33.38827 -31.52032 -31.09577 -30.32471 -28.84817 -27.29207 -27.07581 -25.92153 -24.80150 -23.36810 -23.10824 -22.43515 -21.56060 -21.10015 -20.76479 -18.95629 -18.49000 -18.04289 -17.35474 -17.12903 -16.82102 -16.68126 -16.24533 -15.84038 -15.52095 -15.39607 -15.06274 -14.72876 -14.69072 -14.35608 -14.17513 -13.65566 -13.53859 -13.43429 -13.35027 -13.03599 -12.93659 -12.77909 -12.71772 -12.50583 -12.45509 -12.36963 -12.26553 -12.06847 -11.95014 -11.86265 -11.52238 -11.41519 -11.25985 -11.10328 -11.04828 -10.90574 -10.51849 -10.48223 -10.32103 -9.00019 -8.09941 -6.24903 0.48378 0.79795 1.21019 1.46401 1.47341 1.58211 1.69359 1.77129 1.85517 2.43634 2.86295 2.98560 3.07083 3.19359 3.32237 3.42430 3.59494 3.75832 3.81619 3.91909 3.98766 4.07244 4.13683 4.19355 4.34362 4.39692 4.48177 4.62516 4.71315 4.72009 4.76964 4.79839 4.83139 4.95858 5.01084 5.01744 5.08567 5.12374 5.15630 5.19558 5.21668 5.29397 5.34163 5.46266 5.62154 5.64380 5.86374 6.08268 6.19012 6.23447 6.59692 6.84285 7.04230 7.43703 7.87873 8.96783 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.003891 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.766596 B = 7193.452761 C =10381.576092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.290 3.710 3 N -0.571 5.571 4 C 0.227 3.773 5 C -0.034 4.034 6 C 0.126 3.874 7 N -0.475 5.475 8 C 0.205 3.795 9 C -0.093 4.093 10 C -0.147 4.147 11 C -0.143 4.143 12 N -0.327 5.327 13 N -0.362 5.362 14 C 0.368 3.632 15 N -0.456 5.456 16 C 0.039 3.961 17 C 0.242 3.758 18 H 0.002 0.998 19 C -0.151 4.151 20 C -0.523 4.523 21 H 0.069 0.931 22 C 0.013 3.987 23 N -0.919 5.919 24 Si 0.969 3.031 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.260 1.260 28 N -0.325 5.325 29 N -0.470 5.470 30 H 0.457 0.543 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.024 0.976 46 H 0.032 0.968 47 H 0.062 0.938 48 H 0.031 0.969 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 -27.547 -7.560 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 N -0.302 5.302 4 C -0.057 4.057 5 C -0.075 4.075 6 C 0.002 3.998 7 N -0.171 5.171 8 C -0.063 4.063 9 C -0.114 4.114 10 C -0.185 4.185 11 C -0.181 4.181 12 N -0.165 5.165 13 N -0.205 5.205 14 C 0.011 3.989 15 N -0.179 5.179 16 C -0.108 4.108 17 C 0.136 3.864 18 H 0.020 0.980 19 C -0.211 4.211 20 C -0.561 4.561 21 H 0.087 0.913 22 C -0.187 4.187 23 N -0.558 5.558 24 Si 0.794 3.206 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.184 1.184 28 N -0.155 5.155 29 N -0.191 5.191 30 H 0.307 0.693 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.165 0.835 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.050 0.950 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.473 -26.623 -7.136 28.557 hybrid contribution -1.361 0.208 -0.055 1.378 sum -8.834 -26.415 -7.191 28.766 Atomic orbital electron populations 1.20658 0.80332 1.06542 1.06077 1.25188 0.98197 0.81936 0.93435 1.70406 1.01698 1.31487 1.26590 1.23668 0.93044 0.90088 0.98882 1.20187 0.93022 0.97516 0.96738 1.21805 0.86077 0.94168 0.97728 1.46150 1.08283 1.05475 1.57164 1.24352 0.79641 0.98061 1.04204 1.20306 0.96571 0.86954 1.07529 1.23068 0.90925 1.04266 1.00194 1.23116 1.00767 1.03987 0.90253 1.73812 1.27295 0.95403 1.19951 1.74743 0.99238 1.21982 1.24531 1.23096 0.92720 0.82848 1.00257 1.59159 1.11865 1.11545 1.35357 1.22510 0.96560 1.03547 0.88135 1.18936 0.94909 0.79438 0.93118 0.97999 1.22165 0.98195 1.02752 0.97960 1.21297 0.93771 0.94570 1.46481 0.91280 1.25777 0.99063 0.98629 0.95188 1.70081 1.24609 1.12242 1.48911 0.85392 0.79420 0.77395 0.78418 1.20370 1.21030 1.18383 1.77899 0.98640 1.11731 1.27213 1.47932 1.03166 1.11037 1.56965 0.69346 0.87266 0.86693 0.88533 0.87596 0.89287 0.88639 0.86569 0.83489 0.89797 0.84918 0.84684 0.90151 0.89589 0.89471 0.95722 0.94925 0.91875 0.94966 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.29 4.27 8.24 138.23 1.14 5.41 16 3 N -0.57 -13.14 11.19 -179.73 -2.01 -15.15 16 4 C 0.23 5.15 7.39 138.64 1.03 6.18 16 5 C -0.03 -0.79 5.86 29.85 0.18 -0.61 16 6 C 0.13 3.25 5.11 86.38 0.44 3.69 16 7 N -0.48 -16.32 2.81 -514.84 -1.45 -17.77 16 8 C 0.21 6.95 7.59 137.64 1.04 7.99 16 9 C -0.09 -2.05 6.02 -11.54 -0.07 -2.12 16 10 C -0.15 -2.86 10.15 30.59 0.31 -2.55 16 11 C -0.14 -2.57 10.23 30.59 0.31 -2.26 16 12 N -0.33 -14.17 11.79 -49.53 -0.58 -14.75 16 13 N -0.36 -17.97 9.39 -58.00 -0.54 -18.52 16 14 C 0.37 16.36 6.68 260.11 1.74 18.09 16 15 N -0.46 -21.10 4.69 -711.01 -3.34 -24.44 16 16 C 0.04 1.53 8.14 127.69 1.04 2.57 16 17 C 0.24 13.32 2.01 44.17 0.09 13.41 16 18 H 0.00 0.13 7.89 -2.39 -0.02 0.11 16 19 C -0.15 -8.24 8.19 71.98 0.59 -7.65 16 20 C -0.52 -29.29 7.81 25.60 0.20 -29.09 16 21 H 0.07 3.72 7.19 -2.91 -0.02 3.70 16 22 C 0.01 0.71 5.30 84.66 0.45 1.16 16 23 N -0.92 -55.20 11.32 21.45 0.24 -54.96 16 24 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 28 N -0.32 -6.52 12.80 -51.34 -0.66 -7.18 16 29 N -0.47 -6.09 7.45 -50.71 -0.38 -6.46 16 30 H 0.46 2.12 8.96 -213.09 -1.91 0.21 16 31 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 2.32 6.03 -2.39 -0.01 2.30 16 36 H 0.10 2.75 7.68 -2.39 -0.02 2.73 16 37 H 0.12 2.41 7.67 -2.38 -0.02 2.40 16 38 H 0.15 2.40 7.70 -2.39 -0.02 2.38 16 39 H 0.08 2.12 7.92 -2.39 -0.02 2.10 16 40 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 2.84 4.51 -2.39 -0.01 2.82 16 44 H 0.09 3.55 6.64 -2.39 -0.02 3.54 16 45 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 46 H 0.03 1.64 6.57 -2.38 -0.02 1.63 16 47 H 0.06 3.76 6.07 -2.39 -0.01 3.75 16 48 H 0.03 1.74 6.04 -2.39 -0.01 1.73 16 49 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -82.04 394.54 1.63 -80.41 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.91 Total: 18.23 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 9.23 Total: 14.59 kcal Atomic # 7 Polarization: -150.52 SS G_CDS: -8.72 Total: -159.23 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -82.04 1.63 -80.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454758066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.642 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds