Wall clock time and date at job start Wed Apr 1 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00179 * 2 1 4 4 C 1.52999 * 109.46725 * 269.99952 * 3 2 1 5 5 C 1.53006 * 109.46751 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47039 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47061 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47297 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47627 * 180.02562 * 8 7 6 10 10 C 1.36928 * 120.00040 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00509 * 0.02562 * 10 9 8 12 12 C 1.38811 * 119.99691 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00363 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00157 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47099 * 89.99825 * 14 12 10 16 16 H 1.48493 * 109.47360 * 210.00179 * 14 12 10 17 17 H 1.48503 * 109.46980 * 330.00463 * 14 12 10 18 18 C 1.34777 * 120.00024 * 180.02562 * 2 1 3 19 19 O 1.21715 * 120.00592 * 184.53849 * 18 2 1 20 20 C 1.46583 * 119.99809 * 4.53834 * 18 2 1 21 21 C 1.40653 * 126.53879 * 322.99381 * 20 18 2 22 22 N 1.30698 * 108.72373 * 180.02562 * 21 20 18 23 23 N 1.39902 * 109.52230 * 0.02562 * 22 21 20 24 24 C 1.36315 * 132.16162 * 180.36114 * 23 22 21 25 25 C 1.35753 * 119.15819 * 180.15193 * 24 23 22 26 26 C 1.39966 * 119.35315 * 359.45183 * 25 24 23 27 27 N 1.31494 * 120.10576 * 0.27731 * 26 25 24 28 28 C 1.33383 * 120.85663 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46805 * 264.82426 * 1 2 3 30 30 H 1.09004 * 109.46912 * 24.82507 * 1 2 3 31 31 H 1.08997 * 109.46928 * 144.82447 * 1 2 3 32 32 H 1.08998 * 109.46840 * 29.99949 * 3 2 1 33 33 H 1.09002 * 109.47066 * 150.00196 * 3 2 1 34 34 H 1.08998 * 109.47459 * 299.99618 * 4 3 2 35 35 H 1.09002 * 109.47149 * 60.00295 * 4 3 2 36 36 H 1.09007 * 109.47011 * 299.99913 * 5 4 3 37 37 H 1.08992 * 109.47344 * 59.99718 * 5 4 3 38 38 H 1.08998 * 109.47108 * 299.99509 * 6 5 4 39 39 H 1.09002 * 109.47213 * 60.00010 * 6 5 4 40 40 H 1.08995 * 109.47437 * 300.00113 * 7 6 5 41 41 H 1.09002 * 109.46853 * 60.00091 * 7 6 5 42 42 H 1.09004 * 109.47049 * 300.00743 * 8 7 6 43 43 H 1.09001 * 109.46876 * 59.99840 * 8 7 6 44 44 H 0.97001 * 119.99123 * 0.02562 * 9 8 7 45 45 H 0.96998 * 120.00614 * 180.02562 * 13 12 10 46 46 H 1.07994 * 125.63464 * 0.02562 * 21 20 18 47 47 H 1.08004 * 120.42108 * 359.90581 * 24 23 22 48 48 H 1.07996 * 120.32277 * 179.73167 * 25 24 23 49 49 H 1.07998 * 119.94573 * 180.30537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2182 3.0350 -1.4425 6 6 3.4726 3.4770 -2.8850 7 6 4.2377 4.8019 -2.8850 8 6 4.4927 5.2436 -4.3275 9 7 5.2258 6.5121 -4.3276 10 6 5.5677 7.1051 -5.5135 11 1 5.2967 6.6381 -6.4488 12 6 6.2619 8.3072 -5.5135 13 7 6.5918 8.8767 -4.3737 14 14 6.7291 9.1160 -7.1313 15 1 5.6404 10.0304 -7.5601 16 1 7.9841 9.8896 -6.9537 17 1 6.9339 8.0709 -8.1662 18 6 2.1389 -1.1672 -0.0005 19 8 3.3532 -1.1690 0.0829 20 6 1.4094 -2.4346 -0.1015 21 6 0.1657 -2.7339 0.4833 22 7 -0.1607 -3.9602 0.1707 23 7 0.8423 -4.5222 -0.6265 24 6 0.9707 -5.7496 -1.2055 25 6 2.0799 -6.0220 -1.9392 26 6 3.0596 -5.0345 -2.0942 27 7 2.9053 -3.8577 -1.5282 28 6 1.8209 -3.5853 -0.8009 29 1 -0.3633 -0.0927 1.0235 30 1 -0.3633 0.9327 -0.4315 31 1 -0.3633 -0.8400 -0.5920 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1383 0.5138 34 1 3.0416 0.9507 -1.9563 35 1 1.5001 1.8407 -1.9563 36 1 2.6294 3.7949 -0.9285 37 1 4.1705 2.9043 -0.9288 38 1 4.0611 2.7172 -3.3993 39 1 2.5200 3.6079 -3.3983 40 1 3.6489 5.5615 -2.3708 41 1 5.1903 4.6714 -2.3716 42 1 5.0817 4.4839 -4.8414 43 1 3.5403 5.3740 -4.8413 44 1 5.4689 6.9317 -3.4875 45 1 7.0765 9.7169 -4.3737 46 1 -0.4222 -2.0615 1.0903 47 1 0.2016 -6.4972 -1.0787 48 1 2.2030 -6.9898 -2.4025 49 1 3.9435 -5.2393 -2.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479627326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:07 Heat of formation + Delta-G solvation = 88.108677 kcal Electronic energy + Delta-G solvation = -28355.483246 eV Core-core repulsion = 24320.061375 eV Total energy + Delta-G solvation = -4035.421871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.02323 -39.93493 -38.53290 -36.64362 -35.64867 -34.68432 -34.16278 -32.17606 -31.72683 -30.48649 -29.59739 -27.60885 -26.58173 -25.49535 -24.78527 -23.68655 -22.80395 -22.06570 -20.85167 -20.61072 -19.87271 -18.61822 -18.00818 -17.49918 -16.92805 -16.80559 -16.29326 -16.11191 -15.57702 -15.42284 -14.84328 -14.61337 -14.51772 -14.10918 -13.86913 -13.63480 -13.42666 -13.31932 -13.25727 -13.09672 -12.76062 -12.66775 -12.47565 -12.14547 -12.07715 -11.80635 -11.34365 -11.31555 -11.06910 -10.79730 -10.61211 -10.55065 -10.41374 -10.35796 -10.23536 -10.13952 -10.02342 -9.89661 -9.58877 -8.84875 -8.78683 -8.52559 -6.82465 -5.68485 -2.96503 -0.18144 0.19204 1.32961 1.66288 2.55211 2.72733 3.12515 3.23449 3.46987 3.48838 3.53338 3.55666 3.72673 4.20543 4.33855 4.43688 4.61673 4.65193 4.73402 4.77425 4.81127 4.85442 4.99165 5.07082 5.20541 5.29367 5.30480 5.32375 5.51024 5.57734 5.61612 5.63894 5.74423 5.80728 5.84606 5.92647 6.09956 6.12905 6.29500 6.36985 6.48063 6.48494 6.51323 6.60577 6.70246 7.01247 7.02520 7.05384 7.18090 7.77357 8.08742 8.50991 9.61503 10.21893 10.56730 11.54734 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.001460 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.534949 B =19175.021221 C =20135.377268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.117 3.883 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.237 4.237 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.599 3.401 19 O -0.524 6.524 20 C -0.285 4.285 21 C 0.125 3.875 22 N -0.312 5.312 23 N -0.308 5.308 24 C 0.165 3.835 25 C -0.221 4.221 26 C 0.188 3.812 27 N -0.448 5.448 28 C 0.315 3.685 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.207 0.793 47 H 0.184 0.816 48 H 0.173 0.827 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.156 -35.269 11.587 41.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C -0.005 4.005 4 C -0.172 4.172 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.739 3.261 15 H -0.218 1.218 16 H -0.218 1.218 17 H -0.208 1.208 18 C 0.386 3.614 19 O -0.400 6.400 20 C -0.301 4.301 21 C -0.056 4.056 22 N -0.133 5.133 23 N -0.076 5.076 24 C 0.030 3.970 25 C -0.245 4.245 26 C 0.006 3.994 27 N -0.159 5.159 28 C 0.083 3.917 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.224 0.776 47 H 0.201 0.799 48 H 0.191 0.809 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.908 -35.285 11.691 41.261 hybrid contribution 0.173 0.519 -0.701 0.889 sum -17.736 -34.766 10.990 40.546 Atomic orbital electron populations 1.21996 0.79972 1.03646 1.01329 1.47649 1.06748 1.05911 1.74566 1.21568 0.97834 0.83424 0.97683 1.21960 1.00739 0.98043 0.96432 1.21521 1.00295 0.95702 0.97829 1.21490 1.00296 0.97471 0.95836 1.21725 1.00033 0.96077 0.98525 1.20666 0.94588 0.88822 0.93512 1.42399 1.66970 1.22175 1.06353 1.19272 1.28953 1.02413 0.86247 0.91234 1.24746 1.01545 0.98118 0.96837 1.69664 1.45287 1.19543 1.23907 0.86176 0.77633 0.79260 0.83068 1.21780 1.21778 1.20807 1.16803 0.86379 0.81975 0.76193 1.90842 1.13312 1.86959 1.48837 1.19342 1.00050 0.95679 1.15053 1.24341 0.93208 0.92759 0.95292 1.77611 1.09336 1.11260 1.15136 1.47024 1.16312 1.10830 1.33469 1.22182 0.99088 0.85000 0.90764 1.21986 0.94691 1.03830 1.03999 1.23676 0.97853 0.86692 0.91217 1.68310 1.17654 1.21250 1.08658 1.20366 0.85757 0.89802 0.95749 0.92482 0.90473 0.91165 0.90422 0.89533 0.91580 0.92074 0.91959 0.91719 0.92176 0.92310 0.92172 0.92101 0.96570 0.96627 0.78341 0.93592 0.77646 0.79852 0.80944 0.79677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 9.02 59.85 0.54 0.96 16 2 N -0.62 -6.01 2.87 -183.15 -0.53 -6.53 16 3 C 0.12 1.16 5.42 -4.04 -0.02 1.14 16 4 C -0.13 -1.46 5.54 -26.73 -0.15 -1.61 16 5 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 6 C -0.11 -1.59 5.21 -26.73 -0.14 -1.73 16 7 C -0.13 -2.20 5.33 -26.73 -0.14 -2.35 16 8 C 0.15 3.32 6.26 -4.04 -0.03 3.29 16 9 N -0.74 -20.01 5.60 -59.91 -0.34 -20.35 16 10 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 11 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 12 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 13 N -0.93 -29.38 13.06 55.49 0.72 -28.66 16 14 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 18 C 0.60 7.65 7.57 -12.90 -0.10 7.55 16 19 O -0.52 -8.85 16.63 5.18 0.09 -8.76 16 20 C -0.28 -3.12 5.41 -104.65 -0.57 -3.69 16 21 C 0.12 0.98 9.66 -17.12 -0.17 0.81 16 22 N -0.31 -2.71 12.58 30.77 0.39 -2.32 16 23 N -0.31 -2.58 3.86 -11.97 -0.05 -2.63 16 24 C 0.17 0.67 11.29 -16.45 -0.19 0.49 16 25 C -0.22 -0.53 10.05 -39.82 -0.40 -0.93 16 26 C 0.19 0.98 11.28 -17.05 -0.19 0.79 16 27 N -0.45 -4.75 10.47 -12.00 -0.13 -4.88 16 28 C 0.31 3.45 7.86 -155.83 -1.22 2.23 16 29 H 0.06 0.20 7.30 -51.93 -0.38 -0.18 16 30 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 5.87 -51.93 -0.30 0.08 16 32 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.09 1.01 7.36 -51.93 -0.38 0.63 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 10.86 7.67 -40.82 -0.31 10.54 16 45 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.21 0.83 6.22 -52.49 -0.33 0.51 16 47 H 0.18 0.08 8.06 -52.48 -0.42 -0.34 16 48 H 0.17 -0.30 8.06 -52.49 -0.42 -0.72 16 49 H 0.19 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -40.58 408.80 -9.44 -50.01 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.58 Total: 2.13 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.16 Total: -2.35 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.08 Total: -65.36 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -40.58 -9.44 -50.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479627326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.124 kcal (2) G-P(sol) polarization free energy of solvation -40.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds