Wall clock time and date at job start Wed Apr 1 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46759 * 269.99750 * 3 2 1 5 5 H 1.48498 * 109.47437 * 29.99489 * 3 2 1 6 6 H 1.48493 * 109.46970 * 150.00151 * 3 2 1 7 7 C 1.38812 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99499 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99680 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47331 * 65.00011 * 11 10 9 13 13 N 1.46502 * 109.46637 * 304.99842 * 11 10 9 14 14 C 1.34776 * 119.99612 * 155.00053 * 13 11 10 15 15 O 1.21278 * 120.00512 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.00081 * 179.97438 * 14 13 11 17 17 C 1.52998 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.38223 * 119.62264 * 125.02051 * 18 17 16 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 304.99522 * 18 17 16 24 24 C 1.53000 * 109.47270 * 185.00238 * 11 10 9 25 25 C 1.53004 * 109.46800 * 299.99562 * 24 11 10 26 26 C 1.53003 * 109.47156 * 180.02562 * 25 24 11 27 27 C 1.52995 * 109.46811 * 59.99916 * 26 25 24 28 28 C 1.53003 * 109.47699 * 299.99912 * 27 26 25 29 29 C 1.53000 * 109.46562 * 60.00157 * 28 27 26 30 30 H 0.96995 * 119.99578 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99770 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47369 * 60.00418 * 10 9 7 33 33 H 1.09006 * 109.47278 * 299.99862 * 10 9 7 34 34 H 0.97000 * 120.00243 * 334.99936 * 13 11 10 35 35 H 1.09001 * 109.47133 * 60.00044 * 16 14 13 36 36 H 1.08999 * 109.47373 * 300.00060 * 16 14 13 37 37 H 1.08998 * 109.47414 * 60.00331 * 17 16 14 38 38 H 1.09005 * 109.47187 * 299.99604 * 17 16 14 39 39 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 40 40 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 41 41 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 43 43 H 1.09003 * 109.47376 * 59.99586 * 24 11 10 44 44 H 1.08994 * 109.47351 * 299.99951 * 25 24 11 45 45 H 1.09003 * 109.47209 * 60.00220 * 25 24 11 46 46 H 1.09007 * 109.46955 * 300.00586 * 26 25 24 47 47 H 1.08991 * 109.46924 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47087 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.47066 * 60.00135 * 27 26 25 50 50 H 1.08994 * 109.47220 * 300.00432 * 28 27 26 51 51 H 1.08990 * 109.47258 * 179.97438 * 28 27 26 52 52 H 1.09001 * 109.46891 * 180.02562 * 29 28 27 53 53 H 1.09000 * 109.47773 * 59.99968 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.4980 -4.8144 -0.9284 13 7 0.1440 -4.6753 1.1342 14 6 -1.0804 -5.2361 1.0828 15 8 -1.4206 -5.8608 0.1005 16 6 -2.0266 -5.0881 2.2464 17 6 -3.3369 -5.8135 1.9339 18 6 -4.2832 -5.6649 3.0973 19 6 -5.5465 -5.1444 2.8882 20 6 -6.4094 -5.0124 3.9651 21 6 -5.9677 -5.4112 5.2177 22 6 -4.6908 -5.9227 5.3499 23 7 -3.8966 -6.0334 4.3028 24 6 1.8246 -6.1411 0.1301 25 6 2.7853 -6.2919 -1.0511 26 6 3.5457 -7.6136 -0.9246 27 6 2.5510 -8.7761 -0.9245 28 6 1.5903 -8.6254 0.2567 29 6 0.8300 -7.3037 0.1301 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6847 -3.7138 0.8928 33 1 2.6848 -3.7154 -0.8873 34 1 0.4162 -4.1760 1.9200 35 1 -2.2283 -4.0308 2.4184 36 1 -1.5755 -5.5218 3.1389 37 1 -3.1349 -6.8708 1.7622 38 1 -3.7882 -5.3801 1.0413 39 1 -5.8572 -4.8440 1.8985 40 1 -7.4025 -4.6094 3.8317 41 1 -6.6130 -5.3223 6.0790 42 1 -4.3408 -6.2396 6.3212 43 1 2.3905 -6.1466 1.0617 44 1 2.2195 -6.2866 -1.9827 45 1 3.4937 -5.4635 -1.0515 46 1 4.1115 -7.6195 0.0071 47 1 4.2303 -7.7208 -1.7658 48 1 3.0926 -9.7177 -0.8339 49 1 1.9852 -8.7702 -1.8561 50 1 2.1561 -8.6312 1.1883 51 1 0.8815 -9.4533 0.2565 52 1 0.1459 -7.1961 0.9718 53 1 0.2642 -7.2977 -0.8015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482407099.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:39 Heat of formation + Delta-G solvation = -42.124570 kcal Electronic energy + Delta-G solvation = -30599.560219 eV Core-core repulsion = 26662.031354 eV Total energy + Delta-G solvation = -3937.528865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41278 -40.95533 -39.23262 -37.20241 -35.33879 -35.02002 -33.25678 -33.12857 -32.16923 -31.56482 -30.87332 -28.59581 -26.40116 -25.36911 -24.37750 -23.80381 -22.96605 -22.68006 -21.54830 -21.21416 -20.56449 -19.21470 -18.20643 -17.48779 -17.25354 -17.16381 -16.86420 -16.51203 -16.18908 -15.91779 -15.42230 -15.24464 -15.16296 -14.93647 -14.81861 -14.64197 -14.54296 -14.23108 -14.03897 -13.78226 -13.58925 -13.23480 -13.12344 -12.98542 -12.85359 -12.80955 -12.67110 -12.46219 -12.39595 -12.11226 -12.07536 -11.95877 -11.82181 -11.76752 -11.38154 -11.12464 -10.97746 -10.83911 -10.77888 -10.65685 -10.33472 -9.86397 -9.80837 -8.99780 -7.93917 -5.23162 0.19404 0.39641 1.48093 1.49364 1.57684 1.76226 2.30941 2.56333 2.88947 3.35442 3.40507 3.61395 3.72680 3.84316 3.88895 3.94887 4.07647 4.10805 4.18320 4.19172 4.23041 4.28748 4.31625 4.36780 4.48997 4.52500 4.60018 4.67084 4.67730 4.70185 4.74975 4.76148 4.80751 4.87010 4.93775 4.95956 5.04259 5.10941 5.17676 5.22364 5.29706 5.31367 5.31960 5.33105 5.36766 5.44072 5.48841 5.52531 5.62673 5.72132 5.83612 6.26925 6.66376 7.08261 7.34259 7.36185 8.07986 8.32231 9.29150 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006002 B = 0.003593 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4663.702907 B = 7790.497012 C =11907.464106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.147 3.853 11 C 0.154 3.846 12 H 0.056 0.944 13 N -0.710 5.710 14 C 0.514 3.486 15 O -0.571 6.571 16 C -0.120 4.120 17 C -0.044 4.044 18 C 0.113 3.887 19 C -0.181 4.181 20 C -0.077 4.077 21 C -0.177 4.177 22 C 0.086 3.914 23 N -0.508 5.508 24 C -0.081 4.081 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.095 4.095 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.406 0.594 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.177 0.823 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.046 0.954 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -17.445 8.914 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.021 3.979 11 C 0.049 3.951 12 H 0.074 0.926 13 N -0.360 5.360 14 C 0.302 3.698 15 O -0.452 6.452 16 C -0.161 4.161 17 C -0.082 4.082 18 C -0.024 4.024 19 C -0.201 4.201 20 C -0.103 4.103 21 C -0.196 4.196 22 C -0.071 4.071 23 N -0.218 5.218 24 C -0.101 4.101 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.153 4.153 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.241 0.759 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.194 0.806 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.064 -18.121 8.325 20.575 hybrid contribution -0.895 1.898 -0.030 2.099 sum -5.959 -16.223 8.295 19.170 Atomic orbital electron populations 1.69832 1.06608 1.25923 1.59471 1.25527 0.96296 1.00964 1.03688 0.85167 0.77816 0.79652 0.77271 1.21759 1.22343 1.19233 1.19624 0.91536 0.85169 1.41173 0.90441 1.42521 1.05634 1.00916 1.89426 1.21127 0.93542 0.84148 0.99127 1.21083 0.90067 0.94702 0.89298 0.92604 1.45958 1.14893 1.54663 1.20483 1.20891 0.82232 0.77760 0.88905 1.90655 1.76697 1.42734 1.35067 1.21468 0.94598 1.02958 0.97043 1.20133 0.92404 1.01657 0.94000 1.21278 0.93630 0.94744 0.92752 1.22253 0.94715 1.01391 1.01693 1.21993 1.00605 0.95421 0.92253 1.22502 0.97782 1.00017 0.99292 1.23257 0.90998 0.95090 0.97749 1.67428 1.37669 1.17073 0.99640 1.21429 0.96181 0.92711 0.99765 1.21606 0.97868 0.98639 0.97177 1.21491 0.97527 0.93442 1.02476 1.21529 0.97215 0.98638 0.98032 1.21544 0.98231 0.96574 0.99001 1.21467 0.96621 0.94153 1.01002 0.94150 0.79395 0.94722 0.94412 0.75861 0.89267 0.87285 0.90152 0.90088 0.83816 0.82153 0.81798 0.80586 0.90408 0.93010 0.91493 0.91349 0.91036 0.90725 0.92829 0.91627 0.92191 0.93515 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.96 5.43 -343.44 -1.87 -38.83 16 10 C 0.15 5.69 5.31 86.38 0.46 6.15 16 11 C 0.15 5.24 2.00 44.99 0.09 5.33 16 12 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 13 N -0.71 -23.15 4.41 -442.53 -1.95 -25.10 16 14 C 0.51 16.87 6.19 87.66 0.54 17.42 16 15 O -0.57 -21.60 13.10 -3.02 -0.04 -21.64 16 16 C -0.12 -3.30 5.56 29.85 0.17 -3.14 16 17 C -0.04 -1.14 4.90 29.85 0.15 -0.99 16 18 C 0.11 2.75 6.18 42.55 0.26 3.01 16 19 C -0.18 -3.70 9.71 22.36 0.22 -3.48 16 20 C -0.08 -1.22 10.18 22.47 0.23 -0.99 16 21 C -0.18 -2.57 10.11 22.36 0.23 -2.34 16 22 C 0.09 1.57 11.18 84.67 0.95 2.52 16 23 N -0.51 -12.36 9.88 -183.88 -1.82 -14.18 16 24 C -0.08 -2.23 1.96 -10.79 -0.02 -2.25 16 25 C -0.11 -2.89 4.85 30.60 0.15 -2.74 16 26 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 27 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 28 C -0.12 -2.56 5.92 30.60 0.18 -2.38 16 29 C -0.09 -2.65 3.73 30.59 0.11 -2.53 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.37 20.24 7.33 -92.71 -0.68 19.56 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.47 6.71 -2.38 -0.02 1.45 16 34 H 0.41 12.73 8.60 -92.71 -0.80 11.93 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.11 2.75 7.95 -2.39 -0.02 2.73 16 37 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 38 H 0.08 2.16 7.83 -2.38 -0.02 2.14 16 39 H 0.14 2.56 7.95 -2.91 -0.02 2.53 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.71 6.54 -2.39 -0.02 1.69 16 46 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.05 1.42 5.77 -2.39 -0.01 1.40 16 53 H 0.04 1.47 7.53 -2.39 -0.02 1.45 16 Total: -1.00 -69.30 415.49 1.44 -67.86 By element: Atomic # 1 Polarization: 50.04 SS G_CDS: -0.58 Total: 49.46 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.38 Total: -6.71 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -5.35 Total: -136.75 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.30 1.44 -67.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482407099.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.737 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds