Wall clock time and date at job start Wed Apr 1 2020 03:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99879 * 2 1 4 4 H 1.48503 * 109.47284 * 275.10661 * 3 2 1 5 5 H 1.48499 * 109.47300 * 35.11194 * 3 2 1 6 6 H 1.48511 * 109.46947 * 155.10929 * 3 2 1 7 7 C 1.38806 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00652 * 333.64445 * 7 2 1 9 9 N 1.36941 * 119.99667 * 153.64892 * 7 2 1 10 10 C 1.47481 * 125.66280 * 333.78502 * 9 7 2 11 11 C 1.55026 * 104.90620 * 156.25854 * 10 9 7 12 12 C 1.54480 * 101.53105 * 36.34148 * 11 10 9 13 13 C 1.47186 * 125.65835 * 154.09353 * 9 7 2 14 14 C 1.52230 * 110.29431 * 83.79394 * 12 11 10 15 15 C 1.53165 * 109.65495 * 181.99625 * 14 12 11 16 16 C 1.53176 * 109.28097 * 299.83771 * 15 14 12 17 17 N 1.46941 * 108.93123 * 55.21264 * 16 15 14 18 18 C 1.34779 * 120.70927 * 125.85675 * 17 16 15 19 19 O 1.21273 * 119.99875 * 179.97438 * 18 17 16 20 20 C 1.50703 * 119.99468 * 359.97384 * 18 17 16 21 21 C 1.53003 * 109.46582 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47223 * 180.02562 * 21 20 18 23 23 N 1.46498 * 109.47640 * 179.97438 * 22 21 20 24 24 C 1.36340 * 125.63271 * 269.69510 * 23 22 21 25 25 C 1.34852 * 108.21659 * 179.82729 * 24 23 22 26 26 C 1.40891 * 107.41778 * 0.42228 * 25 24 23 27 27 C 1.34856 * 107.41558 * 359.73610 * 26 25 24 28 28 C 1.47085 * 118.58585 * 305.83394 * 17 16 15 29 29 H 0.97005 * 119.99641 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.35253 * 275.10871 * 10 9 7 31 31 H 1.08995 * 110.35182 * 37.39842 * 10 9 7 32 32 H 1.09005 * 111.01352 * 278.27846 * 11 10 9 33 33 H 1.08997 * 111.01791 * 154.40477 * 11 10 9 34 34 H 1.08995 * 109.91337 * 300.63168 * 13 9 7 35 35 H 1.08998 * 109.90938 * 61.90321 * 13 9 7 36 36 H 1.09007 * 109.44130 * 302.05546 * 14 12 11 37 37 H 1.09003 * 109.43992 * 61.93881 * 14 12 11 38 38 H 1.09004 * 109.50112 * 179.89416 * 15 14 12 39 39 H 1.09005 * 109.50280 * 59.78001 * 15 14 12 40 40 H 1.09002 * 109.56368 * 295.37548 * 16 15 14 41 41 H 1.09004 * 109.55842 * 175.04411 * 16 15 14 42 42 H 1.08997 * 109.47235 * 300.00057 * 20 18 17 43 43 H 1.08995 * 109.47415 * 60.00808 * 20 18 17 44 44 H 1.09003 * 109.46974 * 300.00120 * 21 20 18 45 45 H 1.08993 * 109.47577 * 60.00051 * 21 20 18 46 46 H 1.09003 * 109.46966 * 299.99785 * 22 21 20 47 47 H 1.09007 * 109.47155 * 59.99193 * 22 21 20 48 48 H 1.07995 * 125.89377 * 359.95804 * 24 23 22 49 49 H 1.07999 * 126.29698 * 180.15866 * 25 24 23 50 50 H 1.08002 * 126.29822 * 179.73248 * 26 25 24 51 51 H 1.08005 * 125.88986 * 179.97438 * 27 26 25 52 52 H 1.09002 * 109.57811 * 292.66771 * 28 17 16 53 53 H 1.09003 * 109.57494 * 172.27358 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3897 2.1087 -1.3945 5 1 1.5058 2.6190 0.8053 6 1 3.5976 1.4113 0.5893 7 6 2.0102 -1.2021 0.0005 8 1 1.5544 -2.0887 0.4161 9 7 3.2729 -1.2640 -0.5259 10 6 3.8138 -0.3735 -1.5696 11 6 5.3515 -0.4233 -1.3787 12 6 5.5648 -1.8990 -0.9745 13 6 4.3133 -2.2342 -0.1483 14 6 5.6442 -2.7796 -2.2136 15 6 5.8057 -4.2442 -1.7953 16 6 7.0934 -4.3982 -0.9801 17 7 7.0565 -3.4610 0.1510 18 6 7.2344 -3.8985 1.4134 19 8 7.2019 -3.1136 2.3373 20 6 7.4736 -5.3629 1.6766 21 6 7.6416 -5.5899 3.1803 22 6 7.8851 -7.0765 3.4477 23 7 8.0466 -7.2939 4.8874 24 6 9.2268 -7.2562 5.5690 25 6 8.9701 -7.5000 6.8702 26 6 7.5818 -7.7050 6.9950 27 6 7.0422 -7.5728 5.7662 28 6 6.8218 -2.0353 -0.1237 29 1 -0.4850 0.8401 0.0004 30 1 3.5428 -0.7411 -2.5594 31 1 3.4469 0.6430 -1.4282 32 1 5.6684 0.2499 -0.5821 33 1 5.8688 -0.1946 -2.3104 34 1 4.5355 -2.1453 0.9150 35 1 3.9778 -3.2459 -0.3768 36 1 4.7304 -2.6677 -2.7974 37 1 6.4995 -2.4786 -2.8185 38 1 5.8604 -4.8726 -2.6843 39 1 4.9522 -4.5454 -1.1879 40 1 7.9537 -4.1751 -1.6111 41 1 7.1683 -5.4192 -0.6058 42 1 6.6231 -5.9408 1.3150 43 1 8.3772 -5.6825 1.1575 44 1 8.4919 -5.0119 3.5423 45 1 6.7379 -5.2704 3.6992 46 1 7.0350 -7.6548 3.0857 47 1 8.7890 -7.3957 2.9287 48 1 10.1992 -7.0624 5.1410 49 1 9.6959 -7.5361 7.6692 50 1 7.0477 -7.9271 7.9071 51 1 5.9951 -7.6715 5.5205 52 1 7.6744 -1.6220 -0.6628 53 1 6.6869 -1.4996 0.8160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484832760.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:12 Heat of formation + Delta-G solvation = 19.362375 kcal Electronic energy + Delta-G solvation = -30918.704949 eV Core-core repulsion = 26983.842358 eV Total energy + Delta-G solvation = -3934.862591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.97595 -41.64900 -39.98445 -37.41541 -35.94486 -34.89150 -33.33322 -32.63104 -32.05039 -30.38943 -29.63015 -28.29003 -27.43851 -26.22258 -25.08530 -23.30726 -23.08273 -22.51792 -21.33984 -20.82111 -20.38550 -19.31475 -18.98811 -18.45555 -17.82581 -17.69676 -16.89913 -16.66294 -16.37952 -15.71464 -15.51903 -15.44332 -15.29043 -15.02713 -14.62253 -14.61395 -14.39326 -14.24838 -14.07111 -14.00049 -13.77221 -13.31259 -13.28886 -13.22741 -12.95259 -12.91709 -12.84089 -12.75180 -12.64803 -12.47490 -12.37372 -12.17290 -11.94122 -11.81765 -11.71350 -11.61715 -11.33832 -11.19467 -10.75333 -10.69291 -9.56609 -9.49621 -9.04129 -9.00596 -8.29842 -5.54225 1.19415 1.32177 1.38949 1.43271 1.65369 1.97687 2.15941 2.22847 2.33341 2.92439 3.30974 3.46822 3.58650 3.77034 3.79167 3.80102 3.89333 4.11240 4.16021 4.21646 4.23948 4.29071 4.31695 4.38780 4.40868 4.42723 4.52872 4.58940 4.63504 4.67760 4.71753 4.73902 4.74903 4.79680 4.82032 4.92833 4.96654 4.99670 5.00861 5.12803 5.16635 5.21712 5.23572 5.40768 5.45320 5.48810 5.51930 5.57414 5.67834 6.02825 6.10801 6.35373 6.47797 6.57249 6.73398 7.22060 7.47038 8.09279 8.91268 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.002490 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.395880 B =11243.359679 C =12473.421255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.027 4.027 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.046 0.954 9 N -0.627 5.627 10 C 0.114 3.886 11 C -0.117 4.117 12 C -0.071 4.071 13 C 0.151 3.849 14 C -0.098 4.098 15 C -0.136 4.136 16 C 0.106 3.894 17 N -0.609 5.609 18 C 0.501 3.499 19 O -0.599 6.599 20 C -0.124 4.124 21 C -0.113 4.113 22 C 0.107 3.893 23 N -0.451 5.451 24 C -0.021 4.021 25 C -0.230 4.230 26 C -0.229 4.229 27 C -0.029 4.029 28 C 0.133 3.867 29 H 0.265 0.735 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.116 0.884 34 H -0.006 1.006 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.109 0.891 47 H 0.122 0.878 48 H 0.183 0.817 49 H 0.141 0.859 50 H 0.137 0.863 51 H 0.172 0.828 52 H 0.098 0.902 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.934 -17.558 -3.602 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.223 4.223 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.235 1.235 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.064 0.936 9 N -0.354 5.354 10 C -0.010 4.010 11 C -0.156 4.156 12 C -0.072 4.072 13 C 0.027 3.973 14 C -0.136 4.136 15 C -0.174 4.174 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.291 3.709 19 O -0.480 6.480 20 C -0.164 4.164 21 C -0.152 4.152 22 C -0.013 4.013 23 N -0.126 5.126 24 C -0.151 4.151 25 C -0.254 4.254 26 C -0.254 4.254 27 C -0.159 4.159 28 C 0.010 3.990 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.012 0.988 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.127 0.873 47 H 0.140 0.860 48 H 0.201 0.799 49 H 0.159 0.841 50 H 0.155 0.845 51 H 0.189 0.811 52 H 0.116 0.884 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 24.667 -17.043 -3.468 30.182 hybrid contribution -0.968 1.472 0.927 1.991 sum 23.699 -15.571 -2.540 28.470 Atomic orbital electron populations 1.70009 1.07296 1.27509 1.54272 1.25744 0.95748 1.00736 1.00094 0.85804 0.78647 0.80407 0.77643 1.19415 1.23496 1.19768 1.18455 0.88991 0.94176 1.35655 0.93607 1.44909 1.10561 1.37643 1.42314 1.22034 0.93938 0.93052 0.92003 1.22784 0.94414 0.95600 1.02778 1.21319 0.93297 0.95949 0.96666 1.21460 0.88279 0.92673 0.94908 1.21377 1.02902 0.94577 0.94720 1.22001 0.97792 0.96411 1.01209 1.22109 0.98490 0.93897 0.87023 1.48310 1.70193 1.08584 1.07051 1.21479 0.75252 0.92381 0.81755 1.90714 1.53338 1.59245 1.44691 1.21637 1.06985 0.90700 0.97098 1.21590 1.02028 0.95954 0.95642 1.22074 1.06208 0.95717 0.77321 1.44370 1.06624 1.53208 1.08367 1.22266 0.90981 1.09158 0.92658 1.21196 0.96445 1.11116 0.96691 1.21195 0.95402 1.11211 0.97596 1.22187 0.94716 1.09057 0.89978 1.21341 0.96434 0.82419 0.98790 0.92621 0.94042 0.96122 0.92410 0.86624 0.98823 0.95119 0.92791 0.88494 0.87491 0.93517 0.88226 0.86628 0.86180 0.84345 0.92447 0.93951 0.87268 0.86037 0.79947 0.84094 0.84483 0.81067 0.88449 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.43 13.97 21.65 0.30 -61.13 16 2 C -0.03 -1.68 5.39 84.86 0.46 -1.22 16 3 Si 0.95 49.15 24.93 68.60 1.71 50.86 16 4 H -0.27 -12.92 6.76 99.48 0.67 -12.24 16 5 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 6 H -0.27 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -14.89 10.48 84.03 0.88 -14.01 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 9 N -0.63 -31.72 3.08 -692.50 -2.13 -33.85 16 10 C 0.11 4.83 6.01 86.89 0.52 5.35 16 11 C -0.12 -3.66 5.99 31.79 0.19 -3.47 16 12 C -0.07 -2.05 0.53 -51.91 -0.03 -2.08 16 13 C 0.15 6.29 6.14 86.47 0.53 6.82 16 14 C -0.10 -2.03 4.58 30.39 0.14 -1.89 16 15 C -0.14 -2.09 5.90 30.71 0.18 -1.91 16 16 C 0.11 1.14 6.32 86.35 0.55 1.69 16 17 N -0.61 -12.70 2.85 -820.01 -2.34 -15.04 16 18 C 0.50 12.19 7.70 87.66 0.68 12.86 16 19 O -0.60 -21.82 15.41 -3.01 -0.05 -21.87 16 20 C -0.12 -1.53 4.05 29.85 0.12 -1.41 16 21 C -0.11 -1.88 4.83 30.60 0.15 -1.73 16 22 C 0.11 1.12 6.09 86.38 0.53 1.65 16 23 N -0.45 -7.89 2.75 -524.47 -1.44 -9.33 16 24 C -0.02 -0.37 11.43 83.21 0.95 0.59 16 25 C -0.23 -4.74 10.86 22.14 0.24 -4.50 16 26 C -0.23 -4.99 10.86 22.14 0.24 -4.75 16 27 C -0.03 -0.59 11.43 83.22 0.95 0.36 16 28 C 0.13 3.46 5.01 86.07 0.43 3.89 16 29 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 30 H 0.04 1.68 7.77 -2.39 -0.02 1.66 16 31 H 0.02 0.97 2.87 -2.39 -0.01 0.97 16 32 H 0.06 1.94 8.02 -2.38 -0.02 1.92 16 33 H 0.12 2.59 8.01 -2.39 -0.02 2.57 16 34 H -0.01 -0.31 7.66 -2.39 -0.02 -0.33 16 35 H 0.03 1.27 6.01 -2.39 -0.01 1.25 16 36 H 0.05 1.36 7.51 -2.38 -0.02 1.34 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.05 1.00 6.34 -2.38 -0.02 0.98 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.12 0.52 5.94 -2.39 -0.01 0.50 16 42 H 0.12 0.99 7.71 -2.39 -0.02 0.97 16 43 H 0.14 0.54 7.93 -2.39 -0.02 0.52 16 44 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 45 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 46 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 49 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 50 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 51 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 52 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 53 H 0.05 1.83 6.83 -2.39 -0.02 1.81 16 Total: -1.00 -88.66 403.82 4.60 -84.06 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.85 Total: 10.06 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 7.70 Total: -3.76 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.61 Total: -119.35 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.71 Total: 50.86 kcal Total: -88.66 4.60 -84.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484832760.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.419 kcal (2) G-P(sol) polarization free energy of solvation -88.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds