Wall clock time and date at job start Wed Apr 1 2020 03:02:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 N 1.40445 * 126.82487 * 2 1
4 4 C 1.30708 * 106.79271 * 180.02562 * 3 2 1
5 5 C 1.50707 * 125.52500 * 180.02562 * 4 3 2
6 6 C 1.52998 * 117.49760 * 8.71786 * 5 4 3
7 7 C 1.53008 * 117.49517 * 300.06001 * 5 4 3
8 8 N 1.33242 * 108.95061 * 359.75958 * 4 3 2
9 9 C 1.30825 * 109.82401 * 0.40407 * 8 4 3
10 10 C 1.50705 * 125.96111 * 179.86601 * 9 8 4
11 11 C 1.50697 * 109.47393 * 269.69434 * 10 9 8
12 12 O 1.21288 * 119.99559 * 359.97438 * 11 10 9
13 13 N 1.34771 * 120.00533 * 180.02562 * 11 10 9
14 14 C 1.46500 * 120.00292 * 179.97438 * 13 11 10
15 15 C 1.53001 * 109.47050 * 179.97438 * 14 13 11
16 16 H 1.08999 * 115.49528 * 29.61876 * 15 14 13
17 17 C 1.53002 * 117.44554 * 244.24097 * 15 14 13
18 18 H 1.08998 * 119.53671 * 4.11463 * 17 15 14
19 19 C 1.54790 * 117.94205 * 160.75596 * 17 15 14
20 20 N 1.48142 * 104.41509 * 87.46501 * 19 17 15
21 21 C 1.36941 * 127.83913 * 140.37064 * 20 19 17
22 22 H 1.08001 * 120.00294 * 195.57326 * 21 20 19
23 23 C 1.38818 * 119.99817 * 15.57284 * 21 20 19
24 24 N 1.31624 * 120.00001 * 9.17236 * 23 21 20
25 25 Si 1.86793 * 120.00024 * 189.17797 * 23 21 20
26 26 H 1.48493 * 109.47449 * 85.00062 * 25 23 21
27 27 H 1.48497 * 109.46969 * 324.99546 * 25 23 21
28 28 H 1.48500 * 109.47095 * 204.99927 * 25 23 21
29 29 C 1.48144 * 104.32599 * 320.10566 * 20 19 17
30 30 C 1.52997 * 117.44143 * 175.00021 * 15 14 13
31 31 H 1.08998 * 120.26587 * 356.17089 * 30 15 14
32 32 H 1.09000 * 109.46931 * 269.95795 * 1 2 3
33 33 H 1.08995 * 109.47164 * 29.96040 * 1 2 3
34 34 H 1.09005 * 109.47230 * 149.96043 * 1 2 3
35 35 H 1.08994 * 115.55150 * 154.38953 * 5 4 3
36 36 H 1.08999 * 117.50292 * 0.02562 * 6 5 4
37 37 H 1.08994 * 117.49783 * 145.02241 * 6 5 4
38 38 H 1.08999 * 117.49466 * 214.97855 * 7 5 4
39 39 H 1.08992 * 117.50020 * 359.97438 * 7 5 4
40 40 H 1.08998 * 109.47572 * 149.68781 * 10 9 8
41 41 H 1.09008 * 109.47007 * 29.69141 * 10 9 8
42 42 H 0.97007 * 119.99919 * 359.97438 * 13 11 10
43 43 H 1.08998 * 109.46985 * 60.00265 * 14 13 11
44 44 H 1.08993 * 109.47185 * 299.99446 * 14 13 11
45 45 H 1.08999 * 110.53920 * 328.72416 * 19 17 15
46 46 H 1.08997 * 110.46222 * 206.16450 * 19 17 15
47 47 H 0.96996 * 119.99851 * 180.02562 * 24 23 21
48 48 H 1.09003 * 110.40812 * 158.63555 * 29 20 19
49 49 H 1.08999 * 110.40686 * 280.94758 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 7 2.3067 1.1242 0.0000
4 6 3.5347 0.6765 -0.0006
5 6 4.7776 1.5289 -0.0002
6 6 4.6015 3.0345 0.2065
7 6 4.9754 2.4899 -1.1743
8 7 3.5096 -0.6557 0.0044
9 6 2.2707 -1.0761 -0.0005
10 6 1.8246 -2.5156 -0.0002
11 6 1.6751 -2.9955 -1.4209
12 8 1.9074 -2.2425 -2.3429
13 7 1.2822 -4.2610 -1.6670
14 6 1.1363 -4.7273 -3.0481
15 6 0.6836 -6.1888 -3.0478
16 1 0.0811 -6.4931 -2.1919
17 6 1.6424 -7.2242 -3.6390
18 1 2.6307 -6.9109 -3.9754
19 6 1.4337 -8.7089 -3.2541
20 7 0.4602 -9.2146 -4.2496
21 6 0.4524 -10.4341 -4.8726
22 1 -0.1556 -10.5874 -5.7520
23 6 1.2259 -11.4732 -4.3738
24 7 1.8235 -11.3479 -3.2078
25 14 1.4189 -13.0494 -5.3575
26 1 2.5219 -12.8887 -6.3386
27 1 0.1538 -13.3410 -6.0783
28 1 1.7343 -14.1716 -4.4375
29 6 -0.5068 -8.1043 -4.4134
30 6 0.3605 -6.8271 -4.4002
31 1 0.3949 -6.2303 -5.3116
32 1 -0.3633 -0.0008 1.0277
33 1 -0.3633 0.8903 -0.5132
34 1 -0.3634 -0.8897 -0.5145
35 1 5.6669 1.0632 0.4243
36 1 3.5868 3.4086 0.3428
37 1 5.3752 3.5595 0.7668
38 1 5.9950 2.6566 -1.5218
39 1 4.2069 2.5053 -1.9470
40 1 0.8674 -2.5993 0.5142
41 1 2.5676 -3.1261 0.5132
42 1 1.0961 -4.8631 -0.9296
43 1 2.0936 -4.6440 -3.5627
44 1 0.3935 -4.1166 -3.5612
45 1 1.0242 -8.7890 -2.2472
46 1 2.3728 -9.2573 -3.3282
47 1 2.3643 -12.0738 -2.8594
48 1 -1.0337 -8.1962 -5.3632
49 1 -1.2161 -8.0928 -3.5858
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485626448.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:29
Heat of formation + Delta-G solvation = 140.308987 kcal
Electronic energy + Delta-G solvation = -28809.749693 eV
Core-core repulsion = 24776.591397 eV
Total energy + Delta-G solvation = -4033.158296 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.44592 -39.90392 -38.76530 -37.50938 -35.09963 -34.18817 -33.45106 -32.87726
-30.92915 -29.48095 -27.78692 -27.19514 -26.90201 -24.82433 -24.02754 -22.70344
-21.66065 -21.19141 -20.61165 -20.18852 -19.69380 -19.30341 -17.53533 -17.36441
-16.85610 -16.33167 -16.03673 -15.69569 -15.65911 -15.00335 -14.86109 -14.36572
-14.23075 -13.90471 -13.79628 -13.57365 -13.50457 -13.30649 -12.92301 -12.70570
-12.52495 -12.39362 -11.97291 -11.87658 -11.80259 -11.29188 -11.20608 -11.15186
-10.86495 -10.83988 -10.73990 -10.34367 -10.28035 -10.18362 -10.16473 -9.89155
-9.78102 -9.51532 -9.43262 -9.15256 -9.05980 -8.67696 -6.90827 -5.83609
-3.18034 1.26549 1.98422 2.35469 2.45243 2.99201 3.36190 3.41528
3.42917 3.50236 3.67444 4.03658 4.08750 4.13305 4.42861 4.51639
4.53450 4.57862 4.66073 4.72119 4.82426 4.83500 4.91414 5.01766
5.24169 5.26958 5.31627 5.32736 5.38204 5.45585 5.49074 5.70858
5.78668 5.81843 5.83716 5.86569 5.90560 6.05285 6.18147 6.18962
6.22980 6.48509 6.49038 6.61327 6.66594 6.86928 7.27261 7.31235
7.48942 7.68229 7.88912 7.96657 8.17367 9.07466 9.70134 10.46862
11.30656
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.025728 B = 0.001609 C = 0.001573
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1088.063508 B =17393.365294 C =17792.295612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.373 5.373
3 N -0.315 5.315
4 C 0.256 3.744
5 C -0.071 4.071
6 C -0.161 4.161
7 C -0.158 4.158
8 N -0.526 5.526
9 C 0.303 3.697
10 C -0.067 4.067
11 C 0.516 3.484
12 O -0.531 6.531
13 N -0.718 5.718
14 C 0.156 3.844
15 C -0.150 4.150
16 H 0.104 0.896
17 C -0.167 4.167
18 H 0.102 0.898
19 C 0.184 3.816
20 N -0.594 5.594
21 C -0.228 4.228
22 H 0.077 0.923
23 C -0.005 4.005
24 N -0.916 5.916
25 Si 0.913 3.087
26 H -0.287 1.287
27 H -0.280 1.280
28 H -0.290 1.290
29 C 0.154 3.846
30 C -0.166 4.166
31 H 0.104 0.896
32 H 0.082 0.918
33 H 0.094 0.906
34 H 0.090 0.910
35 H 0.131 0.869
36 H 0.102 0.898
37 H 0.103 0.897
38 H 0.105 0.895
39 H 0.096 0.904
40 H 0.118 0.882
41 H 0.135 0.865
42 H 0.405 0.595
43 H 0.069 0.931
44 H 0.069 0.931
45 H 0.023 0.977
46 H 0.089 0.911
47 H 0.255 0.745
48 H 0.050 0.950
49 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.713 24.893 10.452 27.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.047 4.047
2 N -0.163 5.163
3 N -0.144 5.144
4 C -0.025 4.025
5 C -0.092 4.092
6 C -0.199 4.199
7 C -0.197 4.197
8 N -0.253 5.253
9 C 0.026 3.974
10 C -0.110 4.110
11 C 0.300 3.700
12 O -0.407 6.407
13 N -0.370 5.370
14 C 0.032 3.968
15 C -0.169 4.169
16 H 0.122 0.878
17 C -0.187 4.187
18 H 0.120 0.880
19 C 0.058 3.942
20 N -0.318 5.318
21 C -0.356 4.356
22 H 0.094 0.906
23 C -0.202 4.202
24 N -0.562 5.562
25 Si 0.743 3.257
26 H -0.214 1.214
27 H -0.206 1.206
28 H -0.216 1.216
29 C 0.028 3.972
30 C -0.186 4.186
31 H 0.122 0.878
32 H 0.100 0.900
33 H 0.112 0.888
34 H 0.109 0.891
35 H 0.149 0.851
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.123 0.877
39 H 0.115 0.885
40 H 0.136 0.864
41 H 0.153 0.847
42 H 0.240 0.760
43 H 0.088 0.912
44 H 0.088 0.912
45 H 0.041 0.959
46 H 0.108 0.892
47 H 0.065 0.935
48 H 0.069 0.931
49 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -0.493 25.675 9.780 27.479
hybrid contribution -0.246 -1.371 -0.158 1.402
sum -0.740 24.304 9.622 26.150
Atomic orbital electron populations
1.21961 0.73811 1.05232 1.03674 1.50061 1.07778 1.03732 1.54739
1.77916 1.01337 1.07439 1.27686 1.23041 0.92416 0.89162 0.97889
1.20059 0.93403 0.89794 1.05939 1.23040 1.03713 0.93623 0.99499
1.23046 1.03336 1.01551 0.91767 1.70221 1.19377 1.10897 1.24775
1.23256 0.86140 0.91340 0.96656 1.20196 1.05220 0.88491 0.97077
1.20062 0.77407 0.82321 0.90223 1.90784 1.49163 1.54861 1.45924
1.45942 1.68911 1.12331 1.09863 1.20892 1.01316 0.92875 0.81673
1.22511 1.04354 0.91745 0.98260 0.87831 1.24466 0.93654 0.96987
1.03638 0.87955 1.21145 0.96128 0.85941 0.90982 1.45218 1.25144
1.12607 1.48819 1.19000 1.24917 0.85795 1.05938 0.90571 1.24897
1.01129 0.97812 0.96388 1.69889 1.36195 1.32721 1.17391 0.86124
0.78034 0.82563 0.78947 1.21423 1.20592 1.21612 1.21147 0.91424
0.86107 0.98571 1.23832 1.01393 0.99891 0.93518 0.87781 0.89993
0.88764 0.89131 0.85111 0.87931 0.87869 0.87686 0.88524 0.86410
0.84714 0.76018 0.91223 0.91236 0.95869 0.89238 0.93525 0.93116
0.95827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.60 11.16 59.84 0.67 1.27 16
2 N -0.37 -4.14 4.04 -65.10 -0.26 -4.40 16
3 N -0.32 -4.10 12.24 32.42 0.40 -3.70 16
4 C 0.26 3.37 7.69 -156.85 -1.21 2.16 16
5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16
6 C -0.16 -1.23 10.14 -26.69 -0.27 -1.50 16
7 C -0.16 -1.32 10.24 -26.69 -0.27 -1.60 16
8 N -0.53 -7.38 11.19 -8.16 -0.09 -7.47 16
9 C 0.30 3.55 6.48 -155.69 -1.01 2.54 16
10 C -0.07 -0.53 5.82 -29.03 -0.17 -0.70 16
11 C 0.52 5.75 7.82 -10.99 -0.09 5.66 16
12 O -0.53 -8.46 16.03 5.55 0.09 -8.37 16
13 N -0.72 -7.10 5.56 -60.30 -0.33 -7.43 16
14 C 0.16 1.91 5.95 -4.04 -0.02 1.89 16
15 C -0.15 -2.10 5.39 -90.62 -0.49 -2.59 16
16 H 0.10 1.40 8.04 -51.93 -0.42 0.99 16
17 C -0.17 -3.01 6.76 -89.00 -0.60 -3.61 16
18 H 0.10 1.79 8.12 -51.93 -0.42 1.37 16
19 C 0.18 4.24 5.72 -2.20 -0.01 4.23 16
20 N -0.59 -14.86 3.37 -168.61 -0.57 -15.43 16
21 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16
22 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16
23 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16
24 N -0.92 -26.30 10.87 55.49 0.60 -25.70 16
25 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16
26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
29 C 0.15 3.10 7.03 -2.41 -0.02 3.08 16
30 C -0.17 -2.79 6.85 -89.22 -0.61 -3.40 16
31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16
32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.09 0.45 7.72 -51.93 -0.40 0.05 16
35 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16
36 H 0.10 0.87 7.88 -51.93 -0.41 0.46 16
37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.12 0.45 7.76 -51.93 -0.40 0.04 16
41 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16
42 H 0.40 2.92 8.40 -40.82 -0.34 2.58 16
43 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16
44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16
46 H 0.09 2.34 6.52 -51.93 -0.34 2.00 16
47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
48 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16
49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 409.54 15.07 6.17 6.17
Total: -1.00 -36.63 409.54 -11.72 -48.34
By element:
Atomic # 1 Polarization: 9.62 SS G_CDS: -7.77 Total: 1.85 kcal
Atomic # 6 Polarization: 4.44 SS G_CDS: -4.93 Total: -0.49 kcal
Atomic # 7 Polarization: -63.87 SS G_CDS: -0.26 Total: -64.13 kcal
Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -36.63 -11.72 -48.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485626448.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 188.653 kcal
(2) G-P(sol) polarization free energy of solvation -36.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) 140.309 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds