Wall clock time and date at job start Wed Apr 1 2020 03:02:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 N 1.40445 * 126.82487 * 2 1
4 4 C 1.30708 * 106.79271 * 180.02562 * 3 2 1
5 5 C 1.50707 * 125.52500 * 180.02562 * 4 3 2
6 6 C 1.52998 * 117.49760 * 8.71786 * 5 4 3
7 7 C 1.53008 * 117.49517 * 300.06001 * 5 4 3
8 8 N 1.33242 * 108.95061 * 359.75958 * 4 3 2
9 9 C 1.30825 * 109.82401 * 0.40407 * 8 4 3
10 10 C 1.50705 * 125.96111 * 179.86601 * 9 8 4
11 11 C 1.50697 * 109.47393 * 269.69434 * 10 9 8
12 12 O 1.21288 * 119.99559 * 359.97438 * 11 10 9
13 13 N 1.34771 * 120.00533 * 180.02562 * 11 10 9
14 14 C 1.46500 * 120.00292 * 179.97438 * 13 11 10
15 15 C 1.53001 * 109.47050 * 179.97438 * 14 13 11
16 16 H 1.08999 * 115.49528 * 29.61876 * 15 14 13
17 17 C 1.53002 * 117.44554 * 244.24097 * 15 14 13
18 18 H 1.08998 * 119.53671 * 4.11463 * 17 15 14
19 19 C 1.54790 * 117.94205 * 160.75596 * 17 15 14
20 20 N 1.48142 * 104.41509 * 87.46501 * 19 17 15
21 21 C 1.36941 * 127.83913 * 140.37064 * 20 19 17
22 22 H 1.08001 * 120.00294 * 195.57326 * 21 20 19
23 23 C 1.38818 * 119.99817 * 15.57284 * 21 20 19
24 24 N 1.31624 * 120.00001 * 9.17236 * 23 21 20
25 25 Si 1.86793 * 120.00024 * 189.17797 * 23 21 20
26 26 H 1.48493 * 109.47449 * 85.00062 * 25 23 21
27 27 H 1.48497 * 109.46969 * 324.99546 * 25 23 21
28 28 H 1.48500 * 109.47095 * 204.99927 * 25 23 21
29 29 C 1.48144 * 104.32599 * 320.10566 * 20 19 17
30 30 C 1.52997 * 117.44143 * 175.00021 * 15 14 13
31 31 H 1.08998 * 120.26587 * 356.17089 * 30 15 14
32 32 H 1.09000 * 109.46931 * 269.95795 * 1 2 3
33 33 H 1.08995 * 109.47164 * 29.96040 * 1 2 3
34 34 H 1.09005 * 109.47230 * 149.96043 * 1 2 3
35 35 H 1.08994 * 115.55150 * 154.38953 * 5 4 3
36 36 H 1.08999 * 117.50292 * 0.02562 * 6 5 4
37 37 H 1.08994 * 117.49783 * 145.02241 * 6 5 4
38 38 H 1.08999 * 117.49466 * 214.97855 * 7 5 4
39 39 H 1.08992 * 117.50020 * 359.97438 * 7 5 4
40 40 H 1.08998 * 109.47572 * 149.68781 * 10 9 8
41 41 H 1.09008 * 109.47007 * 29.69141 * 10 9 8
42 42 H 0.97007 * 119.99919 * 359.97438 * 13 11 10
43 43 H 1.08998 * 109.46985 * 60.00265 * 14 13 11
44 44 H 1.08993 * 109.47185 * 299.99446 * 14 13 11
45 45 H 1.08999 * 110.53920 * 328.72416 * 19 17 15
46 46 H 1.08997 * 110.46222 * 206.16450 * 19 17 15
47 47 H 0.96996 * 119.99851 * 180.02562 * 24 23 21
48 48 H 1.09003 * 110.40812 * 158.63555 * 29 20 19
49 49 H 1.08999 * 110.40686 * 280.94758 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 7 2.3067 1.1242 0.0000
4 6 3.5347 0.6765 -0.0006
5 6 4.7776 1.5289 -0.0002
6 6 4.6015 3.0345 0.2065
7 6 4.9754 2.4899 -1.1743
8 7 3.5096 -0.6557 0.0044
9 6 2.2707 -1.0761 -0.0005
10 6 1.8246 -2.5156 -0.0002
11 6 1.6751 -2.9955 -1.4209
12 8 1.9074 -2.2425 -2.3429
13 7 1.2822 -4.2610 -1.6670
14 6 1.1363 -4.7273 -3.0481
15 6 0.6836 -6.1888 -3.0478
16 1 0.0811 -6.4931 -2.1919
17 6 1.6424 -7.2242 -3.6390
18 1 2.6307 -6.9109 -3.9754
19 6 1.4337 -8.7089 -3.2541
20 7 0.4602 -9.2146 -4.2496
21 6 0.4524 -10.4341 -4.8726
22 1 -0.1556 -10.5874 -5.7520
23 6 1.2259 -11.4732 -4.3738
24 7 1.8235 -11.3479 -3.2078
25 14 1.4189 -13.0494 -5.3575
26 1 2.5219 -12.8887 -6.3386
27 1 0.1538 -13.3410 -6.0783
28 1 1.7343 -14.1716 -4.4375
29 6 -0.5068 -8.1043 -4.4134
30 6 0.3605 -6.8271 -4.4002
31 1 0.3949 -6.2303 -5.3116
32 1 -0.3633 -0.0008 1.0277
33 1 -0.3633 0.8903 -0.5132
34 1 -0.3634 -0.8897 -0.5145
35 1 5.6669 1.0632 0.4243
36 1 3.5868 3.4086 0.3428
37 1 5.3752 3.5595 0.7668
38 1 5.9950 2.6566 -1.5218
39 1 4.2069 2.5053 -1.9470
40 1 0.8674 -2.5993 0.5142
41 1 2.5676 -3.1261 0.5132
42 1 1.0961 -4.8631 -0.9296
43 1 2.0936 -4.6440 -3.5627
44 1 0.3935 -4.1166 -3.5612
45 1 1.0242 -8.7890 -2.2472
46 1 2.3728 -9.2573 -3.3282
47 1 2.3643 -12.0738 -2.8594
48 1 -1.0337 -8.1962 -5.3632
49 1 -1.2161 -8.0928 -3.5858
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485626448.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:28
Heat of formation + Delta-G solvation = 116.418386 kcal
Electronic energy + Delta-G solvation = -28810.785668 eV
Core-core repulsion = 24776.591397 eV
Total energy + Delta-G solvation = -4034.194270 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.25839 -40.93209 -40.15307 -38.18046 -36.36469 -35.01505 -34.90131 -33.73121
-32.67808 -30.39375 -28.89821 -28.67706 -28.06516 -26.40087 -24.75475 -23.33503
-23.00278 -22.32509 -21.73656 -21.13213 -20.83682 -20.64317 -18.83855 -18.37317
-18.08758 -17.28600 -16.90577 -16.71466 -16.55580 -16.35764 -15.90995 -15.71100
-15.36632 -14.96234 -14.67384 -14.62925 -14.59058 -14.32078 -14.15018 -14.08886
-13.37240 -13.21199 -13.16695 -13.11050 -12.88286 -12.73065 -12.68154 -12.42759
-12.31691 -11.95424 -11.92454 -11.88636 -11.74139 -11.48743 -11.27682 -11.06270
-10.93636 -10.78851 -10.65124 -10.55170 -10.18015 -10.07457 -8.89262 -7.91508
-5.27230 0.44969 1.31617 1.46558 1.48639 1.51982 1.56563 1.61232
2.14691 2.48429 2.73731 2.81576 2.98938 3.27093 3.35211 3.47311
3.62237 3.71395 3.81376 3.86359 3.87702 4.04630 4.08265 4.20855
4.22811 4.30180 4.33801 4.40995 4.45769 4.55719 4.57686 4.59137
4.69875 4.72893 4.73631 4.88940 4.94836 5.04598 5.09713 5.20961
5.21679 5.28185 5.35925 5.36621 5.44167 5.46356 5.56030 5.68542
5.78662 6.19596 6.49172 7.02506 7.04500 7.16621 7.69495 8.47498
9.21943
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.025728 B = 0.001609 C = 0.001573
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1088.063508 B =17393.365294 C =17792.295612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.375 5.375
3 N -0.340 5.340
4 C 0.239 3.761
5 C -0.094 4.094
6 C -0.142 4.142
7 C -0.157 4.157
8 N -0.564 5.564
9 C 0.293 3.707
10 C -0.060 4.060
11 C 0.520 3.480
12 O -0.583 6.583
13 N -0.706 5.706
14 C 0.164 3.836
15 C -0.102 4.102
16 H 0.118 0.882
17 C -0.182 4.182
18 H 0.106 0.894
19 C 0.189 3.811
20 N -0.622 5.622
21 C -0.242 4.242
22 H 0.079 0.921
23 C -0.061 4.061
24 N -0.945 5.945
25 Si 0.978 3.022
26 H -0.286 1.286
27 H -0.268 1.268
28 H -0.293 1.293
29 C 0.149 3.851
30 C -0.161 4.161
31 H 0.123 0.877
32 H 0.109 0.891
33 H 0.093 0.907
34 H 0.107 0.893
35 H 0.139 0.861
36 H 0.091 0.909
37 H 0.130 0.870
38 H 0.126 0.874
39 H 0.077 0.923
40 H 0.166 0.834
41 H 0.154 0.846
42 H 0.421 0.579
43 H 0.056 0.944
44 H 0.078 0.922
45 H 0.008 0.992
46 H 0.049 0.951
47 H 0.250 0.750
48 H 0.055 0.945
49 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.787 26.034 11.102 28.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.165 5.165
3 N -0.169 5.169
4 C -0.042 4.042
5 C -0.114 4.114
6 C -0.180 4.180
7 C -0.195 4.195
8 N -0.292 5.292
9 C 0.016 3.984
10 C -0.101 4.101
11 C 0.306 3.694
12 O -0.463 6.463
13 N -0.359 5.359
14 C 0.040 3.960
15 C -0.121 4.121
16 H 0.136 0.864
17 C -0.202 4.202
18 H 0.124 0.876
19 C 0.064 3.936
20 N -0.346 5.346
21 C -0.371 4.371
22 H 0.097 0.903
23 C -0.255 4.255
24 N -0.593 5.593
25 Si 0.806 3.194
26 H -0.213 1.213
27 H -0.193 1.193
28 H -0.220 1.220
29 C 0.024 3.976
30 C -0.181 4.181
31 H 0.141 0.859
32 H 0.128 0.872
33 H 0.112 0.888
34 H 0.125 0.875
35 H 0.157 0.843
36 H 0.110 0.890
37 H 0.148 0.852
38 H 0.145 0.855
39 H 0.096 0.904
40 H 0.184 0.816
41 H 0.172 0.828
42 H 0.259 0.741
43 H 0.074 0.926
44 H 0.096 0.904
45 H 0.026 0.974
46 H 0.068 0.932
47 H 0.059 0.941
48 H 0.073 0.927
49 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -1.621 26.823 10.448 28.832
hybrid contribution 0.005 -1.701 -0.365 1.740
sum -1.617 25.122 10.083 27.118
Atomic orbital electron populations
1.22348 0.71385 1.06081 1.05759 1.50359 1.09140 1.03140 1.53868
1.77819 1.01697 1.08876 1.28543 1.23595 0.93358 0.89445 0.97796
1.20280 0.92902 0.90720 1.07534 1.23084 1.03925 0.92043 0.98952
1.23083 1.03936 1.01029 0.91460 1.70193 1.21171 1.11579 1.26277
1.23861 0.85856 0.92810 0.95846 1.20380 1.08249 0.86323 0.95174
1.20517 0.76046 0.81852 0.90994 1.90776 1.51465 1.56246 1.47778
1.45768 1.68285 1.12381 1.09429 1.20669 1.00823 0.91425 0.83087
1.22419 1.01001 0.91614 0.97053 0.86430 1.24135 0.94767 0.94985
1.06313 0.87595 1.20888 0.93849 0.88758 0.90132 1.45545 1.27050
1.13065 1.48963 1.19369 1.24518 0.87079 1.06121 0.90333 1.25701
1.01365 1.00960 0.97470 1.70076 1.37055 1.33301 1.18881 0.85113
0.78197 0.78688 0.77434 1.21334 1.19312 1.21950 1.21298 0.91299
0.86078 0.98956 1.23767 0.99173 0.99226 0.95910 0.85925 0.87229
0.88810 0.87450 0.84346 0.89028 0.85206 0.85542 0.90417 0.81644
0.82796 0.74080 0.92552 0.90388 0.97392 0.93237 0.94125 0.92692
0.95203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.88 11.16 127.77 1.43 2.30 16
2 N -0.38 -7.88 4.04 -359.88 -1.45 -9.33 16
3 N -0.34 -8.85 12.24 -51.33 -0.63 -9.48 16
4 C 0.24 6.36 7.69 138.63 1.07 7.43 16
5 C -0.09 -1.86 6.33 -11.54 -0.07 -1.93 16
6 C -0.14 -2.06 10.14 30.62 0.31 -1.75 16
7 C -0.16 -2.57 10.24 30.62 0.31 -2.26 16
8 N -0.56 -15.77 11.19 -179.72 -2.01 -17.78 16
9 C 0.29 6.47 6.48 138.23 0.90 7.37 16
10 C -0.06 -0.75 5.82 29.10 0.17 -0.58 16
11 C 0.52 10.28 7.82 87.66 0.69 10.97 16
12 O -0.58 -17.88 16.03 -3.05 -0.05 -17.93 16
13 N -0.71 -11.64 5.56 -463.07 -2.57 -14.21 16
14 C 0.16 3.56 5.95 86.38 0.51 4.07 16
15 C -0.10 -2.58 5.39 -10.79 -0.06 -2.63 16
16 H 0.12 2.75 8.04 -2.39 -0.02 2.73 16
17 C -0.18 -6.38 6.76 -9.75 -0.07 -6.44 16
18 H 0.11 3.64 8.12 -2.39 -0.02 3.62 16
19 C 0.19 8.91 5.72 86.67 0.50 9.40 16
20 N -0.62 -31.35 3.37 -687.35 -2.32 -33.67 16
21 C -0.24 -13.43 10.35 84.03 0.87 -12.56 16
22 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16
23 C -0.06 -3.43 5.40 84.86 0.46 -2.97 16
24 N -0.95 -55.87 10.87 21.65 0.24 -55.64 16
25 Si 0.98 45.05 29.56 68.60 2.03 47.08 16
26 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16
27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
28 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
29 C 0.15 5.82 7.03 86.54 0.61 6.43 16
30 C -0.16 -5.06 6.85 -9.89 -0.07 -5.13 16
31 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16
32 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16
33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
34 H 0.11 0.74 7.72 -2.38 -0.02 0.72 16
35 H 0.14 2.38 8.14 -2.39 -0.02 2.37 16
36 H 0.09 1.54 7.88 -2.39 -0.02 1.52 16
37 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16
39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
40 H 0.17 0.45 7.76 -2.39 -0.02 0.43 16
41 H 0.15 1.41 8.14 -2.38 -0.02 1.39 16
42 H 0.42 4.36 8.40 -92.70 -0.78 3.58 16
43 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16
44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16
46 H 0.05 2.70 6.52 -2.39 -0.02 2.68 16
47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16
48 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16
49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
Total: -1.00 -83.95 409.54 0.96 -82.99
By element:
Atomic # 1 Polarization: 16.05 SS G_CDS: 0.19 Total: 16.24 kcal
Atomic # 6 Polarization: 4.18 SS G_CDS: 7.55 Total: 11.73 kcal
Atomic # 7 Polarization: -131.36 SS G_CDS: -8.75 Total: -140.11 kcal
Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.93 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -83.95 0.96 -82.99 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485626448.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 199.409 kcal
(2) G-P(sol) polarization free energy of solvation -83.953 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) 116.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds