Wall clock time and date at job start Wed Apr 1 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99525 * 2 1 4 4 C 1.53007 * 109.46559 * 269.99918 * 3 2 1 5 5 C 1.53001 * 109.46783 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47155 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47155 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47155 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47408 * 180.02562 * 8 7 6 10 10 C 1.36936 * 120.00423 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99396 * 359.97438 * 10 9 8 12 12 C 1.38807 * 120.00373 * 179.97438 * 10 9 8 13 13 N 1.31611 * 120.00210 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99854 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47031 * 89.99433 * 14 12 10 16 16 H 1.48490 * 109.47185 * 209.99679 * 14 12 10 17 17 H 1.48500 * 109.46895 * 329.99984 * 14 12 10 18 18 C 1.34773 * 120.00488 * 179.97438 * 2 1 3 19 19 O 1.21572 * 120.00320 * 184.86904 * 18 2 1 20 20 C 1.47717 * 119.99750 * 4.86713 * 18 2 1 21 21 C 1.40260 * 119.88232 * 140.35532 * 20 18 2 22 22 C 1.36159 * 120.56066 * 179.97438 * 21 20 18 23 23 C 1.39905 * 119.97424 * 0.02562 * 22 21 20 24 24 N 1.34758 * 134.59092 * 180.02562 * 23 22 21 25 25 N 1.28649 * 109.29099 * 179.97438 * 24 23 22 26 26 N 1.28809 * 111.79116 * 359.97438 * 25 24 23 27 27 H 0.96999 * 125.94086 * 179.97438 * 26 25 24 28 28 C 1.37367 * 108.11634 * 359.78822 * 26 25 24 29 29 C 1.38621 * 134.88371 * 179.55303 * 28 26 25 30 30 H 1.09002 * 109.47097 * 265.91607 * 1 2 3 31 31 H 1.08998 * 109.47545 * 25.91892 * 1 2 3 32 32 H 1.09001 * 109.46712 * 145.92604 * 1 2 3 33 33 H 1.09000 * 109.47496 * 29.99454 * 3 2 1 34 34 H 1.08996 * 109.47175 * 149.99971 * 3 2 1 35 35 H 1.08992 * 109.47008 * 299.99645 * 4 3 2 36 36 H 1.08996 * 109.47334 * 60.00150 * 4 3 2 37 37 H 1.09003 * 109.46956 * 299.99951 * 5 4 3 38 38 H 1.09001 * 109.47102 * 59.99397 * 5 4 3 39 39 H 1.09003 * 109.47034 * 299.99763 * 6 5 4 40 40 H 1.08996 * 109.47262 * 59.99658 * 6 5 4 41 41 H 1.09003 * 109.46956 * 299.99811 * 7 6 5 42 42 H 1.08996 * 109.47315 * 59.99690 * 7 6 5 43 43 H 1.09003 * 109.47034 * 299.99763 * 8 7 6 44 44 H 1.08996 * 109.47262 * 59.99658 * 8 7 6 45 45 H 0.97003 * 119.99372 * 359.97438 * 9 8 7 46 46 H 0.97006 * 120.00015 * 180.02562 * 13 12 10 47 47 H 1.08001 * 119.71872 * 0.02562 * 21 20 18 48 48 H 1.07993 * 120.01204 * 180.02562 * 22 21 20 49 49 H 1.08005 * 120.24700 * 0.63560 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2178 3.0352 -1.4427 6 6 3.4722 3.4771 -2.8852 7 6 4.2371 4.8022 -2.8852 8 6 4.4909 5.2445 -4.3277 9 7 5.2239 6.5130 -4.3278 10 6 5.5658 7.1062 -5.5138 11 1 5.2955 6.6386 -6.4490 12 6 6.2598 8.3083 -5.5139 13 7 6.5889 8.8781 -6.6537 14 14 6.7279 9.1166 -3.8961 15 1 8.0645 8.6307 -3.4685 16 1 6.7703 10.5903 -4.0732 17 1 5.7211 8.7712 -2.8606 18 6 2.1390 -1.1671 0.0005 19 8 3.3514 -1.1689 0.0899 20 6 1.4045 -2.4442 -0.1074 21 6 1.9235 -3.4847 -0.8917 22 6 1.2582 -4.6677 -1.0005 23 6 0.0460 -4.8524 -0.3271 24 7 -0.8353 -5.8669 -0.2263 25 7 -1.8076 -5.5110 0.5372 26 7 -1.6565 -4.3091 0.9751 27 1 -2.2659 -3.8368 1.5636 28 6 -0.4800 -3.8142 0.4672 29 6 0.2000 -2.6106 0.5695 30 1 -0.3633 -0.0732 1.0251 31 1 -0.3634 0.9243 -0.4492 32 1 -0.3633 -0.8513 -0.5758 33 1 1.6083 2.0285 0.5137 34 1 3.1498 1.1386 0.5138 35 1 3.0415 0.9508 -1.9563 36 1 1.5000 1.8406 -1.9564 37 1 2.6290 3.7950 -0.9287 38 1 4.1702 2.9045 -0.9289 39 1 4.0608 2.7174 -3.3995 40 1 2.5196 3.6079 -3.3985 41 1 3.6481 5.5617 -2.3710 42 1 5.1897 4.6719 -2.3718 43 1 5.0797 4.4851 -4.8423 44 1 3.5382 5.3749 -4.8408 45 1 5.4669 6.9327 -3.4878 46 1 7.0742 9.7181 -6.6537 47 1 2.8592 -3.3467 -1.4131 48 1 1.6662 -5.4631 -1.6065 49 1 -0.1999 -1.8094 1.1734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489100752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:25 Heat of formation + Delta-G solvation = 84.174201 kcal Electronic energy + Delta-G solvation = -28150.339466 eV Core-core repulsion = 24114.746982 eV Total energy + Delta-G solvation = -4035.592483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.85511 -40.80298 -38.14935 -36.94243 -36.06290 -34.69854 -34.33214 -32.38231 -31.33855 -31.31335 -30.29858 -27.97291 -27.14617 -25.35523 -24.43214 -23.61306 -23.12161 -22.20494 -21.00328 -20.92281 -20.36757 -19.11422 -18.55518 -17.56774 -17.46741 -16.90616 -16.54399 -16.15393 -15.84529 -15.43994 -15.15373 -14.74081 -14.54610 -14.27452 -13.93424 -13.70915 -13.52920 -13.31855 -13.13051 -12.92271 -12.77865 -12.73622 -12.60861 -12.44421 -12.35313 -11.86241 -11.72671 -11.56376 -11.46613 -11.41376 -10.94780 -10.83619 -10.74492 -10.52293 -10.34833 -10.30683 -10.07777 -9.66984 -9.56238 -9.19376 -9.10496 -8.85947 -7.19105 -5.74039 -3.08993 -0.32492 0.52413 1.48537 1.80353 2.18134 2.40755 2.97584 3.29211 3.39290 3.42327 3.46749 3.78793 3.86678 4.21770 4.25155 4.38464 4.45472 4.57025 4.61848 4.63995 4.69679 4.77105 4.94733 5.03119 5.04060 5.11095 5.22033 5.24900 5.37362 5.44576 5.46935 5.53069 5.56655 5.60710 5.68786 5.79638 5.87895 5.89307 6.01274 6.07195 6.09570 6.15488 6.24115 6.28058 6.41238 6.74684 6.81529 6.85744 7.56783 7.60213 8.03313 8.45415 9.25144 9.97738 10.18257 11.44594 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.001348 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.177796 B =20773.882761 C =21003.807829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.112 3.888 4 C -0.134 4.134 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.130 4.130 8 C 0.156 3.844 9 N -0.759 5.759 10 C -0.244 4.244 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.886 3.114 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.559 3.441 19 O -0.520 6.520 20 C -0.089 4.089 21 C -0.070 4.070 22 C -0.050 4.050 23 C 0.026 3.974 24 N -0.249 5.249 25 N -0.007 5.007 26 N -0.414 5.414 27 H 0.454 0.546 28 C 0.018 3.982 29 C -0.074 4.074 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.149 0.851 48 H 0.148 0.852 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.208 -28.093 20.730 40.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C -0.009 4.009 4 C -0.172 4.172 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.168 4.168 8 C 0.029 3.971 9 N -0.404 5.404 10 C -0.374 4.374 11 H 0.107 0.893 12 C -0.193 4.193 13 N -0.584 5.584 14 Si 0.716 3.284 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.347 3.653 19 O -0.395 6.395 20 C -0.096 4.096 21 C -0.092 4.092 22 C -0.072 4.072 23 C -0.099 4.099 24 N -0.125 5.125 25 N 0.011 4.989 26 N -0.142 5.142 27 H 0.301 0.699 28 C -0.102 4.102 29 C -0.097 4.097 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.166 0.834 48 H 0.166 0.834 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.392 -29.341 20.485 41.187 hybrid contribution 0.391 1.982 1.499 2.515 sum -20.001 -27.360 21.983 40.396 Atomic orbital electron populations 1.22199 0.79613 1.04223 1.01513 1.47791 1.07072 1.06162 1.73156 1.21670 0.97929 0.83284 0.98042 1.21963 1.00990 0.98193 0.96094 1.21526 1.00279 0.95675 0.97939 1.21483 1.00501 0.97371 0.95781 1.21778 1.00045 0.96371 0.98589 1.20639 0.94937 0.88088 0.93463 1.42748 1.68712 1.23692 1.05249 1.19097 1.29419 1.02945 0.85920 0.89272 1.24677 1.00643 0.97622 0.96362 1.69706 1.45064 1.19717 1.23912 0.86517 0.78490 0.78936 0.84432 1.21068 1.21729 1.20373 1.18157 0.87072 0.83242 0.76861 1.90853 1.13218 1.86903 1.48558 1.19787 0.94430 0.95396 0.99966 1.20830 1.00065 0.90984 0.97297 1.20012 0.91074 0.98004 0.98147 1.20133 0.97989 0.90922 1.00856 1.75432 0.99708 1.23547 1.13860 1.78022 1.18507 0.95506 1.06848 1.44894 1.18269 1.11989 1.39088 0.69874 1.19622 0.90464 0.98088 1.02023 1.20487 0.93733 0.94635 1.00812 0.92253 0.90204 0.90449 0.90149 0.89302 0.91422 0.91794 0.91940 0.91695 0.91902 0.92036 0.92232 0.92132 0.95676 0.95787 0.80739 0.93106 0.83356 0.83398 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 8.88 59.85 0.53 0.73 16 2 N -0.61 -3.90 2.87 -182.73 -0.53 -4.42 16 3 C 0.11 0.79 5.43 -4.04 -0.02 0.77 16 4 C -0.13 -1.08 5.54 -26.73 -0.15 -1.23 16 5 C -0.12 -1.09 5.21 -26.73 -0.14 -1.23 16 6 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 7 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 8 C 0.16 3.10 6.26 -4.04 -0.03 3.07 16 9 N -0.76 -18.78 5.41 -59.91 -0.32 -19.10 16 10 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 11 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 12 C 0.00 0.07 5.50 -17.44 -0.10 -0.02 16 13 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 14 Si 0.89 22.50 27.74 -169.99 -4.71 17.79 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 18 C 0.56 4.78 7.33 -12.39 -0.09 4.69 16 19 O -0.52 -6.46 16.46 5.30 0.09 -6.37 16 20 C -0.09 -0.58 5.23 -104.92 -0.55 -1.13 16 21 C -0.07 -0.45 9.54 -39.57 -0.38 -0.83 16 22 C -0.05 -0.31 10.03 -39.71 -0.40 -0.71 16 23 C 0.03 0.20 7.36 -84.95 -0.63 -0.42 16 24 N -0.25 -2.30 12.42 32.09 0.40 -1.90 16 25 N -0.01 -0.05 13.28 60.35 0.80 0.75 16 26 N -0.41 -1.75 7.08 32.31 0.23 -1.52 16 27 H 0.45 -0.03 8.96 -190.24 -1.71 -1.73 16 28 C 0.02 0.10 7.40 -84.24 -0.62 -0.52 16 29 C -0.07 -0.33 7.57 -39.10 -0.30 -0.63 16 30 H 0.06 0.06 6.91 -51.93 -0.36 -0.30 16 31 H 0.08 0.18 8.04 -51.93 -0.42 -0.24 16 32 H 0.08 0.20 5.80 -51.93 -0.30 -0.10 16 33 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.09 0.77 7.36 -51.93 -0.38 0.39 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.36 8.63 5.53 -40.82 -0.23 8.40 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 47 H 0.15 0.87 8.05 -52.49 -0.42 0.45 16 48 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.15 0.26 5.33 -52.48 -0.28 -0.02 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -37.73 402.16 -9.26 -46.99 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.75 Total: -0.75 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -3.30 Total: -8.36 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 1.36 Total: -55.36 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: 0.09 Total: -6.37 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.73 -9.26 -46.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489100752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.169 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds