Wall clock time and date at job start Wed Apr 1 2020 03:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48496 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00126 * 3 2 1 6 6 H 1.48506 * 109.46827 * 59.99757 * 3 2 1 7 7 C 1.38812 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99622 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99670 * 180.27462 * 9 7 2 11 11 C 1.53011 * 109.46488 * 179.72217 * 10 9 7 12 12 C 1.52996 * 109.46709 * 175.08532 * 11 10 9 13 13 H 1.09004 * 109.58598 * 60.14747 * 12 11 10 14 14 C 1.53186 * 109.59156 * 299.86509 * 12 11 10 15 15 C 1.53039 * 109.31601 * 185.57557 * 14 12 11 16 16 C 1.53042 * 109.53489 * 61.36847 * 15 14 12 17 17 C 1.53193 * 109.30953 * 298.63488 * 16 15 14 18 18 N 1.46925 * 109.58509 * 180.43118 * 12 11 10 19 19 C 1.34780 * 120.63148 * 353.39945 * 18 12 11 20 20 O 1.21279 * 119.99694 * 5.43287 * 19 18 12 21 21 C 1.50701 * 120.00116 * 185.43480 * 19 18 12 22 22 C 1.52993 * 109.47206 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47436 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.47696 * 179.97438 * 23 22 21 25 25 C 1.38677 * 120.41693 * 269.72740 * 24 23 22 26 26 C 1.38626 * 118.41648 * 179.78243 * 25 24 23 27 27 C 1.38224 * 119.16582 * 0.50378 * 26 25 24 28 28 N 1.31854 * 120.75925 * 359.73016 * 27 26 25 29 29 C 1.31888 * 121.72765 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99427 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47363 * 299.72317 * 10 9 7 33 33 H 1.09003 * 109.46863 * 59.73184 * 10 9 7 34 34 H 1.08997 * 109.47049 * 295.08670 * 11 10 9 35 35 H 1.08998 * 109.46395 * 55.09106 * 11 10 9 36 36 H 1.09003 * 109.49970 * 305.53499 * 14 12 11 37 37 H 1.09009 * 109.49874 * 65.62768 * 14 12 11 38 38 H 1.09004 * 109.45939 * 181.38196 * 15 14 12 39 39 H 1.08992 * 109.46107 * 301.35971 * 15 14 12 40 40 H 1.08999 * 109.49908 * 58.58615 * 16 15 14 41 41 H 1.08997 * 109.49563 * 178.68504 * 16 15 14 42 42 H 1.09002 * 109.58534 * 174.42617 * 17 16 15 43 43 H 1.09004 * 109.58292 * 294.70294 * 17 16 15 44 44 H 1.09008 * 109.46797 * 300.00030 * 21 19 18 45 45 H 1.08997 * 109.47056 * 59.99671 * 21 19 18 46 46 H 1.09004 * 109.47244 * 300.00170 * 22 21 19 47 47 H 1.09005 * 109.47081 * 59.99293 * 22 21 19 48 48 H 1.09004 * 109.47136 * 300.00351 * 23 22 21 49 49 H 1.09007 * 109.46955 * 59.99639 * 23 22 21 50 50 H 1.07999 * 120.79034 * 0.02562 * 25 24 23 51 51 H 1.08005 * 120.41799 * 180.25930 * 26 25 24 52 52 H 1.07994 * 119.62123 * 179.74855 * 27 26 25 53 53 H 1.07998 * 119.61599 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 0.0039 11 6 1.0639 -4.8197 0.0084 12 6 1.8250 -6.1417 -0.1094 13 1 2.5067 -6.2473 0.7346 14 6 2.6211 -6.1612 -1.4180 15 6 3.2675 -7.5368 -1.5969 16 6 2.1773 -8.6077 -1.6788 17 6 1.3761 -8.6160 -0.3731 18 7 0.8719 -7.2598 -0.1158 19 6 -0.4400 -7.0452 0.1066 20 8 -0.8590 -5.9123 0.2164 21 6 -1.3862 -8.2127 0.2187 22 6 -2.8048 -7.6973 0.4688 23 6 -3.7656 -8.8826 0.5821 24 6 -5.1628 -8.3750 0.8290 25 6 -5.6231 -8.1874 2.1237 26 6 -6.9138 -7.7144 2.3029 27 6 -7.6972 -7.4574 1.1935 28 7 -7.2278 -7.6521 -0.0232 29 6 -6.0036 -8.0964 -0.2315 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3881 -0.0023 32 1 2.6852 -3.7181 -0.8855 33 1 2.6845 -3.7107 0.8945 34 1 0.4963 -4.8088 0.9389 35 1 0.3812 -4.7171 -0.8350 36 1 1.9511 -5.9624 -2.2545 37 1 3.3971 -5.3964 -1.3832 38 1 3.8547 -7.5454 -2.5152 39 1 3.9181 -7.7454 -0.7477 40 1 1.5114 -8.3860 -2.5129 41 1 2.6373 -9.5843 -1.8296 42 1 0.5377 -9.3067 -0.4632 43 1 2.0203 -8.9284 0.4488 44 1 -1.3666 -8.7866 -0.7079 45 1 -1.0795 -8.8506 1.0477 46 1 -2.8248 -7.1232 1.3952 47 1 -3.1112 -7.0596 -0.3604 48 1 -3.7455 -9.4564 -0.3445 49 1 -3.4593 -9.5206 1.4111 50 1 -4.9897 -8.4008 2.9720 51 1 -7.3037 -7.5525 3.2970 52 1 -8.7051 -7.0926 1.3247 53 1 -5.6543 -8.2440 -1.2427 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496412847.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:38 Heat of formation + Delta-G solvation = -20.118639 kcal Electronic energy + Delta-G solvation = -29986.629596 eV Core-core repulsion = 26050.054980 eV Total energy + Delta-G solvation = -3936.574617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58673 -41.04760 -38.56308 -37.01849 -36.25659 -34.63230 -33.81267 -33.17806 -32.55256 -31.97758 -29.28639 -28.35976 -26.30222 -25.34120 -24.57911 -24.47987 -23.53625 -22.30239 -21.94877 -21.50926 -19.80757 -19.21693 -18.00793 -17.54526 -17.42747 -17.14681 -16.76713 -16.53831 -16.04751 -15.85131 -15.46433 -15.34750 -15.19824 -15.04131 -14.93216 -14.68881 -14.42657 -14.32554 -14.01551 -13.92147 -13.77587 -13.45012 -13.20957 -12.99680 -12.85675 -12.83537 -12.71111 -12.52873 -12.24058 -12.12122 -12.09906 -11.94348 -11.84619 -11.75731 -11.61570 -11.48966 -11.34977 -10.95612 -10.70381 -10.37108 -9.98050 -9.84457 -9.45494 -9.03866 -7.97375 -5.28507 0.18914 0.36952 1.42634 1.45902 1.56114 1.76000 2.06233 2.53300 2.87272 3.34868 3.50944 3.57679 3.78744 3.82807 3.89211 3.92957 3.97497 4.09292 4.10392 4.13405 4.15809 4.25433 4.26526 4.29741 4.44073 4.48958 4.53775 4.61171 4.63883 4.69438 4.74030 4.77742 4.80343 4.84738 4.87086 4.93297 5.00419 5.01330 5.12963 5.14215 5.18996 5.22371 5.25380 5.38783 5.40422 5.42741 5.45260 5.49029 5.53210 5.75698 5.82878 6.23600 6.57220 7.04726 7.27788 7.36261 8.04923 8.29368 9.27044 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007247 B = 0.002637 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.824799 B =10614.523961 C =14020.361055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.144 3.856 11 C -0.086 4.086 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.131 4.131 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.101 3.899 18 N -0.611 5.611 19 C 0.492 3.508 20 O -0.578 6.578 21 C -0.126 4.126 22 C -0.096 4.096 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.084 4.084 26 C -0.172 4.172 27 C 0.071 3.929 28 N -0.519 5.519 29 C 0.079 3.921 30 H 0.251 0.749 31 H 0.369 0.631 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.155 0.845 51 H 0.159 0.841 52 H 0.171 0.829 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -31.973 1.870 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.017 3.983 11 C -0.124 4.124 12 C 0.053 3.947 13 H 0.098 0.902 14 C -0.169 4.169 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.020 4.020 18 N -0.344 5.344 19 C 0.282 3.718 20 O -0.458 6.458 21 C -0.165 4.165 22 C -0.134 4.134 23 C -0.102 4.102 24 C -0.139 4.139 25 C -0.110 4.110 26 C -0.192 4.192 27 C -0.085 4.085 28 N -0.228 5.228 29 C -0.077 4.077 30 H 0.060 0.940 31 H 0.200 0.800 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.173 0.827 51 H 0.177 0.823 52 H 0.188 0.812 53 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.719 -31.139 1.206 31.383 hybrid contribution 0.188 1.691 0.615 1.809 sum -3.531 -29.447 1.821 29.714 Atomic orbital electron populations 1.69892 1.06991 1.26062 1.59560 1.25747 0.96491 1.01633 1.03606 0.84946 0.78218 0.79027 0.76785 1.18567 1.21790 1.21805 1.19754 0.91584 0.85296 1.41272 0.90291 1.42658 1.05538 1.01590 1.89333 1.21052 0.94262 0.85554 0.97393 1.21858 0.95857 0.92785 1.01879 1.21072 0.90243 0.84973 0.98454 0.90244 1.22006 0.99235 0.99544 0.96131 1.21529 0.98028 0.92812 1.02963 1.21933 0.97513 1.00355 0.97192 1.22111 1.00405 0.81303 0.98161 1.48344 1.06442 1.09157 1.70504 1.21650 0.83184 0.91517 0.75446 1.90880 1.77534 1.25956 1.51395 1.21762 0.92603 0.95616 1.06545 1.21232 0.93312 0.97400 1.01439 1.20550 0.87907 0.96741 1.04956 1.21164 0.98283 1.00311 0.94104 1.21917 0.95947 0.95511 0.97585 1.22483 0.95227 0.99986 1.01492 1.23169 1.01177 0.96470 0.87695 1.67649 1.15961 1.12771 1.26382 1.22985 0.89261 0.95232 1.00244 0.94010 0.80041 0.95564 0.96601 0.92773 0.93892 0.93549 0.91209 0.90921 0.90565 0.92494 0.87663 0.86706 0.89570 0.85942 0.85687 0.93547 0.93933 0.88459 0.88185 0.82739 0.82324 0.81218 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.02 13.06 21.65 0.28 -64.74 16 2 C -0.08 -5.17 5.50 84.86 0.47 -4.70 16 3 Si 0.98 48.99 29.55 68.60 2.03 51.02 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 7 C -0.25 -15.15 9.99 84.03 0.84 -14.31 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 9 N -0.75 -43.86 5.60 -343.44 -1.92 -45.78 16 10 C 0.14 6.63 6.05 86.38 0.52 7.15 16 11 C -0.09 -3.47 3.26 30.60 0.10 -3.37 16 12 C 0.16 4.39 3.01 44.97 0.14 4.52 16 13 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 14 C -0.13 -3.22 4.86 30.67 0.15 -3.07 16 15 C -0.12 -1.77 5.88 30.62 0.18 -1.59 16 16 C -0.13 -1.43 6.08 30.67 0.19 -1.24 16 17 C 0.10 1.10 6.32 86.36 0.55 1.64 16 18 N -0.61 -13.45 2.98 -794.94 -2.37 -15.82 16 19 C 0.49 12.82 7.61 87.66 0.67 13.49 16 20 O -0.58 -22.51 11.39 -3.03 -0.03 -22.54 16 21 C -0.13 -1.77 4.11 29.85 0.12 -1.65 16 22 C -0.10 -1.77 4.49 30.59 0.14 -1.64 16 23 C -0.06 -0.73 5.37 29.84 0.16 -0.57 16 24 C -0.14 -2.35 5.15 -19.78 -0.10 -2.45 16 25 C -0.08 -1.34 9.86 22.47 0.22 -1.12 16 26 C -0.17 -2.76 10.11 22.36 0.23 -2.53 16 27 C 0.07 1.38 11.18 84.69 0.95 2.33 16 28 N -0.52 -12.50 10.36 -195.85 -2.03 -14.53 16 29 C 0.08 1.65 10.86 84.67 0.92 2.57 16 30 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.37 23.60 7.67 -92.71 -0.71 22.89 16 32 H 0.03 1.17 6.32 -2.39 -0.02 1.15 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 2.48 6.48 -2.39 -0.02 2.46 16 35 H 0.04 1.99 7.01 -2.39 -0.02 1.97 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.85 6.65 -2.38 -0.02 1.84 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.11 0.55 5.97 -2.39 -0.01 0.53 16 43 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.12 0.99 7.46 -2.38 -0.02 0.97 16 45 H 0.13 0.96 8.12 -2.39 -0.02 0.94 16 46 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 47 H 0.04 1.05 8.10 -2.38 -0.02 1.03 16 48 H 0.10 0.74 8.09 -2.38 -0.02 0.72 16 49 H 0.10 0.69 8.09 -2.38 -0.02 0.67 16 50 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 51 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 52 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 53 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -87.69 415.53 2.55 -85.14 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.18 Total: 33.79 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 6.42 Total: -6.54 kcal Atomic # 7 Polarization: -134.82 SS G_CDS: -6.04 Total: -140.86 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.03 Total: -22.54 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -87.69 2.55 -85.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496412847.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.018 kcal (2) G-P(sol) polarization free energy of solvation -87.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds