Wall clock time and date at job start Wed Apr 1 2020 03:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00492 * 2 1 4 4 H 1.48495 * 109.46951 * 270.00065 * 3 2 1 5 5 H 1.48499 * 109.46726 * 29.99670 * 3 2 1 6 6 H 1.48495 * 109.47337 * 149.99754 * 3 2 1 7 7 C 1.38817 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00149 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00025 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47514 * 305.00368 * 11 10 9 13 13 C 1.53002 * 109.46637 * 65.00239 * 11 10 9 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 11 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34778 * 120.00072 * 154.99744 * 17 15 14 19 19 O 1.21273 * 120.00144 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99935 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47250 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47347 * 179.97438 * 21 20 18 23 23 C 1.50699 * 109.47140 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.61689 * 124.73542 * 23 22 21 25 25 C 1.38625 * 119.15719 * 179.75618 * 24 23 22 26 26 C 1.38674 * 118.42342 * 0.50027 * 25 24 23 27 27 C 1.38186 * 119.16222 * 359.73257 * 26 25 24 28 28 N 1.31850 * 119.61597 * 305.00011 * 23 22 21 29 29 C 1.52999 * 109.47159 * 59.99536 * 15 14 13 30 30 C 1.52997 * 109.47317 * 300.00546 * 29 15 14 31 31 H 0.97006 * 119.99775 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99616 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47071 * 60.00004 * 10 9 7 34 34 H 1.09000 * 109.47025 * 300.00245 * 10 9 7 35 35 H 1.08993 * 109.47662 * 299.99908 * 13 11 10 36 36 H 1.09002 * 109.47075 * 60.00414 * 13 11 10 37 37 H 1.09002 * 109.47153 * 60.00231 * 14 13 11 38 38 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 39 39 H 0.97007 * 119.99693 * 334.99885 * 17 15 14 40 40 H 1.08999 * 109.47030 * 300.00189 * 20 18 17 41 41 H 1.09005 * 109.47169 * 59.99938 * 20 18 17 42 42 H 1.08999 * 109.47176 * 299.99999 * 21 20 18 43 43 H 1.09005 * 109.47168 * 59.99837 * 21 20 18 44 44 H 1.08999 * 109.47103 * 300.00193 * 22 21 20 45 45 H 1.09005 * 109.46998 * 59.99882 * 22 21 20 46 46 H 1.07997 * 120.41781 * 359.96895 * 24 23 22 47 47 H 1.08004 * 120.78915 * 180.25524 * 25 24 23 48 48 H 1.08003 * 120.42013 * 179.71704 * 26 25 24 49 49 H 1.07997 * 119.61900 * 179.97438 * 27 26 25 50 50 H 1.08996 * 109.46929 * 179.97438 * 29 15 14 51 51 H 1.09002 * 109.46716 * 60.00455 * 29 15 14 52 52 H 1.09002 * 109.47153 * 299.99641 * 30 29 15 53 53 H 1.09001 * 109.46832 * 179.97438 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8658 -1.5456 -0.8406 13 6 6.0062 -1.4990 1.3085 14 6 7.5105 -1.2200 1.3088 15 6 8.2741 -2.5400 1.1833 16 1 8.0242 -3.1858 2.0251 17 7 9.7145 -2.2729 1.1842 18 6 10.5768 -3.2285 1.5838 19 8 10.1604 -4.3094 1.9430 20 6 12.0586 -2.9540 1.5842 21 6 12.8070 -4.1940 2.0773 22 6 14.3114 -3.9155 2.0771 23 6 15.0485 -5.1371 2.5622 24 6 16.0396 -5.6940 1.7759 25 6 16.7150 -6.8147 2.2338 26 6 16.3597 -7.3419 3.4661 27 6 15.3550 -6.7337 4.1943 28 7 14.7370 -5.6653 3.7294 29 6 7.8841 -3.2325 -0.1241 30 6 6.3797 -3.5115 -0.1244 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 3.8490 -3.0424 -0.8892 34 1 3.8483 -3.0428 0.8908 35 1 5.4620 -0.5589 1.3982 36 1 5.7567 -2.1450 2.1503 37 1 7.7605 -0.5742 0.4670 38 1 7.7885 -0.7271 2.2404 39 1 10.0476 -1.4082 0.8972 40 1 12.3836 -2.7124 0.5722 41 1 12.2723 -2.1136 2.2447 42 1 12.4821 -4.4360 3.0892 43 1 12.5933 -5.0341 1.4164 44 1 14.6360 -3.6737 1.0650 45 1 14.5254 -3.0752 2.7377 46 1 16.2869 -5.2595 0.8187 47 1 17.4968 -7.2688 1.6429 48 1 16.8616 -8.2170 3.8519 49 1 15.0720 -7.1384 5.1548 50 1 8.4284 -4.1725 -0.2137 51 1 8.1340 -2.5867 -0.9658 52 1 6.1298 -4.1572 0.7174 53 1 6.1019 -4.0044 -1.0560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501718716.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:26 Heat of formation + Delta-G solvation = -48.450540 kcal Electronic energy + Delta-G solvation = -28763.518093 eV Core-core repulsion = 24825.714913 eV Total energy + Delta-G solvation = -3937.803180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20229 -40.96463 -39.52561 -36.88814 -35.90666 -35.10993 -33.43477 -33.27326 -32.41089 -31.75361 -30.84440 -28.45796 -26.74048 -24.73202 -24.39250 -23.86786 -23.38898 -22.26218 -21.77709 -21.32841 -20.69415 -19.64201 -18.16235 -17.59476 -17.27188 -17.16451 -16.69784 -16.55202 -16.32489 -15.96561 -15.76874 -15.36107 -15.24305 -14.97451 -14.83093 -14.69035 -14.59076 -14.16390 -14.04494 -13.90891 -13.66908 -13.42039 -13.19205 -13.00912 -12.95162 -12.81862 -12.71597 -12.54500 -12.19955 -12.17211 -12.05790 -12.01998 -11.85345 -11.66497 -11.49636 -11.32567 -11.17186 -10.93932 -10.78537 -10.73514 -10.29571 -9.97803 -9.85196 -9.28582 -8.02489 -5.36044 0.20565 0.39958 1.37331 1.42552 1.49982 1.73305 2.25181 2.49345 2.88593 3.28673 3.42854 3.57713 3.70717 3.75259 3.77844 3.88032 3.98295 4.04537 4.14006 4.20027 4.21455 4.28549 4.30756 4.33686 4.44348 4.49959 4.55466 4.56756 4.58604 4.69712 4.74814 4.76643 4.83224 4.86353 4.91361 4.98859 5.03630 5.10133 5.12431 5.16992 5.20352 5.21972 5.29125 5.30746 5.34940 5.43813 5.46535 5.55658 5.62093 5.75818 5.84964 6.21494 6.66706 7.08632 7.11263 7.37652 7.84489 8.05934 9.19371 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.034025 B = 0.001420 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.723720 B =19709.725429 C =20005.303954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.239 4.239 8 H 0.051 0.949 9 N -0.754 5.754 10 C 0.156 3.844 11 C -0.085 4.085 12 H 0.079 0.921 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.148 3.852 16 H 0.060 0.940 17 N -0.715 5.715 18 C 0.504 3.496 19 O -0.592 6.592 20 C -0.130 4.130 21 C -0.088 4.088 22 C -0.064 4.064 23 C 0.108 3.892 24 C -0.177 4.177 25 C -0.080 4.080 26 C -0.183 4.183 27 C 0.079 3.921 28 N -0.518 5.518 29 C -0.115 4.115 30 C -0.103 4.103 31 H 0.258 0.742 32 H 0.368 0.632 33 H 0.021 0.979 34 H 0.016 0.984 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.417 0.583 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.158 0.842 49 H 0.165 0.835 50 H 0.053 0.947 51 H 0.079 0.921 52 H 0.055 0.945 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 42.763 -7.167 2.260 43.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.171 1.171 7 C -0.370 4.370 8 H 0.069 0.931 9 N -0.401 5.401 10 C 0.030 3.970 11 C -0.104 4.104 12 H 0.097 0.903 13 C -0.147 4.147 14 C -0.150 4.150 15 C 0.043 3.957 16 H 0.078 0.922 17 N -0.366 5.366 18 C 0.293 3.707 19 O -0.473 6.473 20 C -0.170 4.170 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.030 4.030 24 C -0.196 4.196 25 C -0.106 4.106 26 C -0.202 4.202 27 C -0.077 4.077 28 N -0.228 5.228 29 C -0.153 4.153 30 C -0.142 4.142 31 H 0.067 0.933 32 H 0.202 0.798 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.254 0.746 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.177 0.823 47 H 0.179 0.821 48 H 0.175 0.825 49 H 0.182 0.818 50 H 0.071 0.929 51 H 0.098 0.902 52 H 0.074 0.926 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 41.623 -7.651 3.021 42.428 hybrid contribution 0.040 0.442 -0.288 0.529 sum 41.663 -7.208 2.733 42.370 Atomic orbital electron populations 1.69905 1.07316 1.26759 1.59675 1.25573 0.96174 1.01514 1.02433 0.85354 0.78789 0.79065 0.78271 1.20170 1.22239 1.17086 1.19065 0.82987 0.93419 1.41561 0.93124 1.42684 1.02283 1.04205 1.90889 1.20841 0.91201 0.87280 0.97656 1.21282 0.92797 0.97694 0.98651 0.90252 1.21469 0.95664 1.00494 0.97099 1.21715 0.93704 0.95949 1.03658 1.20842 0.80022 0.97028 0.97804 0.92219 1.46021 1.06036 1.17494 1.67089 1.21454 0.90460 0.83480 0.75337 1.90711 1.80768 1.26374 1.49412 1.21723 0.88385 1.00588 1.06259 1.21082 0.93729 0.96765 1.01083 1.20622 0.92945 0.93571 1.03037 1.21686 0.94200 0.96947 0.90141 1.22348 0.97339 0.97822 1.02119 1.22027 0.98408 0.94593 0.95557 1.22460 0.99182 1.02322 0.96263 1.23125 0.92779 0.91451 1.00388 1.67460 1.28093 1.12131 1.15151 1.21776 0.95176 1.00521 0.97874 1.21409 0.94346 0.96187 1.02244 0.93331 0.79831 0.96107 0.96597 0.92408 0.92707 0.89447 0.90446 0.74566 0.85560 0.86214 0.93437 0.93661 0.87307 0.89059 0.82314 0.82135 0.82479 0.81796 0.92862 0.90198 0.92602 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.32 13.97 21.65 0.30 -64.02 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 45.33 27.74 68.60 1.90 47.24 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 7 C -0.24 -14.07 10.47 84.03 0.88 -13.19 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 9 N -0.75 -35.82 5.13 -343.44 -1.76 -37.59 16 10 C 0.16 6.11 5.65 86.38 0.49 6.60 16 11 C -0.09 -2.44 2.23 -10.79 -0.02 -2.47 16 12 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 13 C -0.11 -2.91 5.08 30.59 0.16 -2.76 16 14 C -0.11 -2.13 5.39 30.60 0.16 -1.97 16 15 C 0.15 3.03 2.45 44.99 0.11 3.14 16 16 H 0.06 1.59 7.58 -2.39 -0.02 1.58 16 17 N -0.71 -10.88 5.08 -442.54 -2.25 -13.13 16 18 C 0.50 9.75 7.79 87.66 0.68 10.44 16 19 O -0.59 -18.07 15.64 -3.01 -0.05 -18.12 16 20 C -0.13 -1.33 5.70 29.85 0.17 -1.16 16 21 C -0.09 -1.37 4.36 30.59 0.13 -1.24 16 22 C -0.06 -0.66 5.61 29.85 0.17 -0.49 16 23 C 0.11 1.63 6.18 42.55 0.26 1.90 16 24 C -0.18 -1.87 9.71 22.36 0.22 -1.66 16 25 C -0.08 -0.73 10.18 22.47 0.23 -0.50 16 26 C -0.18 -1.91 10.11 22.36 0.23 -1.68 16 27 C 0.08 1.20 11.18 84.67 0.95 2.15 16 28 N -0.52 -10.19 9.88 -183.88 -1.82 -12.00 16 29 C -0.11 -2.43 5.50 30.59 0.17 -2.27 16 30 C -0.10 -2.56 5.20 30.59 0.16 -2.41 16 31 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 32 H 0.37 16.25 4.71 -92.71 -0.44 15.82 16 33 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 1.73 7.18 -2.39 -0.02 1.72 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.42 3.26 8.60 -92.70 -0.80 2.46 16 40 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.05 1.07 7.90 -2.39 -0.02 1.05 16 43 H 0.04 0.89 8.10 -2.38 -0.02 0.87 16 44 H 0.11 0.45 7.87 -2.39 -0.02 0.43 16 45 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.16 0.74 7.95 -2.91 -0.02 0.72 16 47 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 48 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 49 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 50 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -83.60 422.75 1.53 -82.07 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.40 Total: 26.58 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.60 Total: -11.02 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.53 Total: -126.74 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Total: -83.60 1.53 -82.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501718716.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.620 kcal (2) G-P(sol) polarization free energy of solvation -83.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds