Wall clock time and date at job start Wed Apr 1 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99954 * 2 1 4 4 H 1.48503 * 109.46560 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47109 * 299.99553 * 3 2 1 6 6 H 1.48497 * 109.47378 * 60.00088 * 3 2 1 7 7 C 1.38817 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99482 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46877 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47198 * 305.00122 * 11 10 9 13 13 C 1.52998 * 109.47445 * 65.00061 * 11 10 9 14 14 C 1.52994 * 109.47445 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47014 * 299.99741 * 14 13 11 16 16 H 1.08995 * 109.47314 * 300.00393 * 15 14 13 17 17 N 1.46506 * 109.47127 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99659 * 85.00546 * 17 15 14 19 19 O 1.21626 * 120.00050 * 359.97438 * 18 17 15 20 20 C 1.47262 * 119.99721 * 180.02562 * 18 17 15 21 21 C 1.46742 * 126.92270 * 179.97438 * 20 18 17 22 22 C 1.34067 * 106.31306 * 179.97438 * 21 20 18 23 23 N 1.37086 * 109.04028 * 0.04337 * 22 21 20 24 24 C 1.34576 * 109.94619 * 359.93154 * 23 22 21 25 25 C 1.47027 * 123.95153 * 179.89605 * 23 22 21 26 26 C 1.53146 * 108.84153 * 342.46127 * 25 23 22 27 27 C 1.53126 * 109.59415 * 51.20094 * 26 25 23 28 28 C 1.51085 * 126.72987 * 180.02562 * 22 21 20 29 29 C 1.53008 * 109.46828 * 60.00265 * 15 14 13 30 30 C 1.52999 * 109.46841 * 299.99838 * 29 15 14 31 31 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 32 32 H 0.96991 * 120.00780 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46784 * 60.00189 * 10 9 7 34 34 H 1.08997 * 109.46823 * 300.00260 * 10 9 7 35 35 H 1.09003 * 109.47271 * 300.00253 * 13 11 10 36 36 H 1.09004 * 109.46873 * 59.99862 * 13 11 10 37 37 H 1.09002 * 109.47083 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47687 * 59.99625 * 14 13 11 39 39 H 0.97002 * 120.00035 * 265.00321 * 17 15 14 40 40 H 1.07999 * 126.84687 * 359.97387 * 21 20 18 41 41 H 1.07998 * 125.72241 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.57531 * 222.66133 * 25 23 22 43 43 H 1.08996 * 109.58218 * 102.27356 * 25 23 22 44 44 H 1.08996 * 109.45085 * 291.16077 * 26 25 23 45 45 H 1.09002 * 109.44524 * 171.23837 * 26 25 23 46 46 H 1.09000 * 109.52470 * 49.73486 * 27 26 25 47 47 H 1.09001 * 109.52395 * 169.86580 * 27 26 25 48 48 H 1.09001 * 109.72401 * 44.55302 * 28 22 21 49 49 H 1.09003 * 109.75295 * 283.91972 * 28 22 21 50 50 H 1.08995 * 109.47069 * 59.99978 * 29 15 14 51 51 H 1.08999 * 109.46816 * 180.02562 * 29 15 14 52 52 H 1.08997 * 109.46881 * 180.02562 * 30 29 15 53 53 H 1.09004 * 109.47200 * 299.99954 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3792 -4.7130 0.8415 13 6 0.2694 -4.8109 -1.3077 14 6 -0.7245 -5.9741 -1.3086 15 6 0.0368 -7.2954 -1.1833 16 1 0.7213 -7.4017 -2.0248 17 7 -0.9149 -8.4093 -1.1835 18 6 -1.3526 -8.9214 -2.3509 19 8 -0.9578 -8.4585 -3.4041 20 6 -2.3096 -10.0406 -2.3512 21 6 -2.8826 -10.7102 -3.5245 22 6 -3.6977 -11.6644 -3.0528 23 7 -3.6736 -11.6360 -1.6824 24 6 -2.8431 -10.6658 -1.2579 25 6 -4.4526 -12.5446 -0.8284 26 6 -5.5685 -13.1756 -1.6662 27 6 -4.9755 -13.7711 -2.9462 28 6 -4.5238 -12.6314 -3.8684 29 6 0.8311 -7.3043 0.1245 30 6 1.8249 -6.1410 0.1253 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6845 -3.7146 0.8906 34 1 2.6846 -3.7146 -0.8894 35 1 -0.2726 -3.8694 -1.3974 36 1 0.9539 -4.9177 -2.1493 37 1 -1.2900 -5.9681 -2.2404 38 1 -1.4089 -5.8680 -0.4671 39 1 -1.2300 -8.7782 -0.3436 40 1 -2.6869 -10.4801 -4.5613 41 1 -2.6337 -10.4215 -0.2270 42 1 -4.8891 -11.9842 -0.0017 43 1 -3.8018 -13.3271 -0.4384 44 1 -6.3023 -12.4128 -1.9268 45 1 -6.0536 -13.9635 -1.0900 46 1 -4.1198 -14.3975 -2.6942 47 1 -5.7308 -14.3726 -3.4521 48 1 -3.9213 -13.0342 -4.6825 49 1 -5.3959 -12.1191 -4.2748 50 1 0.1466 -7.1980 0.9660 51 1 1.3737 -8.2454 0.2136 52 1 2.3910 -6.1475 1.0567 53 1 2.5094 -6.2473 -0.7163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501722763.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:39 Heat of formation + Delta-G solvation = -31.432639 kcal Electronic energy + Delta-G solvation = -29577.797866 eV Core-core repulsion = 25640.732637 eV Total energy + Delta-G solvation = -3937.065228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.49397 -40.80662 -39.26659 -36.74910 -36.62356 -35.08194 -33.64827 -33.13067 -31.72732 -31.16057 -29.86191 -28.38052 -26.84943 -25.40963 -24.52192 -23.83437 -23.21438 -22.43150 -21.79481 -21.12354 -20.40728 -19.56213 -19.13818 -18.27448 -17.21713 -17.08124 -16.67096 -16.55947 -16.00584 -15.72120 -15.47981 -15.27386 -15.11869 -15.06792 -14.85544 -14.67493 -14.58049 -14.43826 -14.38746 -13.77370 -13.56311 -13.43274 -13.30184 -13.10151 -13.05889 -12.86967 -12.78543 -12.43138 -12.11460 -12.04224 -12.01509 -11.94063 -11.89300 -11.78237 -11.70063 -11.47175 -11.26544 -11.14528 -10.92811 -10.82140 -10.04403 -9.50423 -9.11311 -8.97340 -7.94655 -5.22810 0.78380 1.42892 1.46286 1.47832 1.57925 1.88935 2.31163 2.56419 2.60808 3.38702 3.60902 3.71904 3.73608 3.77163 3.83025 3.89005 3.96907 4.08936 4.09642 4.17897 4.22116 4.41738 4.44626 4.46459 4.49569 4.54664 4.55716 4.56444 4.61415 4.61936 4.84298 4.85828 4.90113 4.96042 4.97930 5.06449 5.08789 5.10342 5.13436 5.15772 5.19788 5.23156 5.26120 5.32287 5.33962 5.47685 5.54205 5.58531 5.63977 5.78109 6.07938 6.28253 6.35370 6.72840 7.34058 7.41006 8.12108 8.35243 9.29333 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.001630 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.020618 B =17173.109176 C =17392.497935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.153 3.847 11 C -0.082 4.082 12 H 0.069 0.931 13 C -0.101 4.101 14 C -0.116 4.116 15 C 0.153 3.847 16 H 0.063 0.937 17 N -0.709 5.709 18 C 0.584 3.416 19 O -0.601 6.601 20 C -0.266 4.266 21 C -0.179 4.179 22 C 0.018 3.982 23 N -0.436 5.436 24 C 0.071 3.929 25 C 0.092 3.908 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.055 4.055 29 C -0.109 4.109 30 C -0.102 4.102 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.024 0.976 34 H 0.013 0.987 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.127 0.873 41 H 0.206 0.794 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.084 0.916 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 -37.026 1.867 38.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.027 3.973 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.139 4.139 14 C -0.155 4.155 15 C 0.048 3.952 16 H 0.081 0.919 17 N -0.360 5.360 18 C 0.375 3.625 19 O -0.484 6.484 20 C -0.277 4.277 21 C -0.203 4.203 22 C -0.091 4.091 23 N -0.112 5.112 24 C -0.066 4.066 25 C -0.027 4.027 26 C -0.171 4.171 27 C -0.160 4.160 28 C -0.093 4.093 29 C -0.147 4.147 30 C -0.140 4.140 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.145 0.855 41 H 0.223 0.777 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.129 0.871 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.108 0.892 52 H 0.103 0.897 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.795 -36.872 1.358 38.736 hybrid contribution 0.031 1.675 -0.266 1.697 sum -11.764 -35.196 1.092 37.126 Atomic orbital electron populations 1.69836 1.06641 1.25933 1.59761 1.25591 0.96441 1.01163 1.03856 0.85047 0.78216 0.79686 0.76667 1.19018 1.22199 1.21781 1.19718 0.91534 0.85558 1.40867 0.90732 1.42619 1.05647 1.01233 1.89238 1.20894 0.94032 0.85039 0.97373 1.21237 0.96861 0.94691 0.97314 0.91280 1.21367 0.97676 0.97261 0.97615 1.21798 0.98053 0.94433 1.01198 1.20864 0.90077 0.84613 0.99612 0.91916 1.45727 1.46605 1.35351 1.08328 1.17853 0.79754 0.81605 0.83337 1.90737 1.60549 1.63710 1.33362 1.20366 1.08481 1.03749 0.95063 1.21617 1.01907 0.99027 0.97757 1.20624 1.03471 1.01550 0.83415 1.44238 1.34163 1.26822 1.05959 1.22191 0.94040 0.90847 0.99485 1.22495 0.93863 0.93019 0.93311 1.21889 0.96782 1.01591 0.96817 1.21648 1.01751 0.96888 0.95670 1.20492 0.98185 0.93778 0.96823 1.21713 0.98099 0.99338 0.95575 1.21434 0.97548 0.91958 1.03071 0.94065 0.79409 0.95761 0.96913 0.94090 0.93259 0.94274 0.90930 0.74997 0.85527 0.77731 0.87178 0.88119 0.91359 0.87050 0.91342 0.88973 0.89386 0.89684 0.89561 0.89154 0.89703 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.24 -14.29 9.99 84.03 0.84 -13.46 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -39.71 5.33 -343.44 -1.83 -41.54 16 10 C 0.15 6.39 5.65 86.38 0.49 6.88 16 11 C -0.08 -2.69 2.23 -10.80 -0.02 -2.72 16 12 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.10 -3.58 5.08 30.59 0.16 -3.42 16 14 C -0.12 -3.53 5.49 30.59 0.17 -3.36 16 15 C 0.15 3.87 2.45 45.00 0.11 3.98 16 16 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 17 N -0.71 -15.45 5.07 -445.92 -2.26 -17.71 16 18 C 0.58 17.01 7.77 86.62 0.67 17.69 16 19 O -0.60 -23.85 16.63 -4.11 -0.07 -23.92 16 20 C -0.27 -6.31 6.29 -19.02 -0.12 -6.43 16 21 C -0.18 -4.33 10.88 23.54 0.26 -4.07 16 22 C 0.02 0.30 6.53 40.91 0.27 0.57 16 23 N -0.44 -5.39 3.11 -507.86 -1.58 -6.97 16 24 C 0.07 1.02 10.90 83.93 0.91 1.93 16 25 C 0.09 0.34 6.89 86.33 0.59 0.94 16 26 C -0.13 -0.33 5.91 30.69 0.18 -0.15 16 27 C -0.12 -0.55 5.96 30.77 0.18 -0.36 16 28 C -0.06 -0.55 6.26 30.11 0.19 -0.36 16 29 C -0.11 -2.07 5.39 30.60 0.16 -1.91 16 30 C -0.10 -2.43 5.20 30.60 0.16 -2.28 16 31 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.37 21.14 6.85 -92.72 -0.64 20.51 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.04 1.72 7.18 -2.39 -0.02 1.71 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.41 5.53 7.54 -92.71 -0.70 4.83 16 40 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.21 1.14 7.45 -2.91 -0.02 1.12 16 42 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.07 0.31 8.11 -2.39 -0.02 0.29 16 45 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.07 0.33 8.12 -2.39 -0.02 0.32 16 47 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -83.57 415.74 1.80 -81.76 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.44 Total: 30.58 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.67 Total: -10.75 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.39 Total: -127.45 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -83.57 1.80 -81.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501722763.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.332 kcal (2) G-P(sol) polarization free energy of solvation -83.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds