Wall clock time and date at job start Wed Apr 1 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40451 * 126.82004 * 2 1 4 4 C 1.30711 * 106.78864 * 180.25111 * 3 2 1 5 5 C 1.50698 * 125.52312 * 179.78343 * 4 3 2 6 6 C 1.52997 * 117.50170 * 8.70694 * 5 4 3 7 7 C 1.53001 * 117.50014 * 300.04265 * 5 4 3 8 8 N 1.33239 * 108.94914 * 359.74696 * 4 3 2 9 9 C 1.30830 * 109.82759 * 0.02562 * 8 4 3 10 10 C 1.50700 * 125.95757 * 179.97438 * 9 8 4 11 11 C 1.50700 * 109.47086 * 90.02599 * 10 9 8 12 12 O 1.21289 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00324 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00102 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47021 * 179.97438 * 14 13 11 16 16 C 1.29454 * 117.69519 * 94.99989 * 15 14 13 17 17 C 1.50322 * 123.65500 * 180.86104 * 16 15 14 18 18 N 1.47012 * 109.16271 * 349.01804 * 17 16 15 19 19 C 1.36934 * 121.37462 * 222.96812 * 18 17 16 20 20 H 1.08005 * 120.00007 * 155.96961 * 19 18 17 21 21 C 1.38818 * 120.00320 * 335.97331 * 19 18 17 22 22 N 1.31616 * 119.99424 * 344.52132 * 21 19 18 23 23 Si 1.86793 * 120.00033 * 164.52092 * 21 19 18 24 24 H 1.48499 * 109.47295 * 59.99993 * 23 21 19 25 25 H 1.48498 * 109.47025 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47357 * 299.99725 * 23 21 19 27 27 C 1.47333 * 117.24883 * 42.94994 * 18 17 16 28 28 C 1.49972 * 117.69466 * 274.74033 * 15 14 13 29 29 H 1.08993 * 109.47656 * 270.17592 * 1 2 3 30 30 H 1.08998 * 109.47127 * 30.18342 * 1 2 3 31 31 H 1.09008 * 109.46620 * 150.17750 * 1 2 3 32 32 H 1.09001 * 115.55250 * 154.37952 * 5 4 3 33 33 H 1.09001 * 117.49988 * 359.97438 * 6 5 4 34 34 H 1.08995 * 117.50114 * 145.02185 * 6 5 4 35 35 H 1.08993 * 117.50300 * 214.97967 * 7 5 4 36 36 H 1.09005 * 117.49601 * 359.97438 * 7 5 4 37 37 H 1.08996 * 109.47746 * 330.02148 * 10 9 8 38 38 H 1.09001 * 109.46956 * 210.01873 * 10 9 8 39 39 H 0.96997 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.08996 * 109.47132 * 59.99990 * 14 13 11 41 41 H 1.09001 * 109.46799 * 299.99571 * 14 13 11 42 42 H 1.07997 * 118.17426 * 0.87895 * 16 15 14 43 43 H 1.08999 * 109.52720 * 108.92650 * 17 16 15 44 44 H 1.08998 * 109.52220 * 229.11921 * 17 16 15 45 45 H 0.97005 * 119.99607 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.77712 * 57.81016 * 27 18 17 47 47 H 1.08993 * 109.77988 * 178.61344 * 27 18 17 48 48 H 1.09000 * 109.31400 * 281.28746 * 28 15 14 49 49 H 1.08991 * 109.31850 * 40.71826 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0055 5 6 4.7775 1.5290 -0.0122 6 6 4.6023 3.0350 0.1926 7 6 4.9701 2.4878 -1.1889 8 7 3.5096 -0.6555 -0.0033 9 6 2.2707 -1.0760 0.0030 10 6 1.8248 -2.5155 0.0067 11 6 1.6823 -2.9936 1.4287 12 8 1.9199 -2.2397 2.3487 13 7 1.2907 -4.2588 1.6783 14 6 1.1527 -4.7237 3.0608 15 6 0.7055 -6.1628 3.0645 16 6 1.6178 -7.0761 3.1608 17 6 1.3242 -8.5504 3.1587 18 7 -0.1250 -8.7540 3.2984 19 6 -0.6329 -9.7166 4.1294 20 1 -1.6340 -9.6175 4.5223 21 6 0.1391 -10.8199 4.4669 22 7 1.2187 -11.1055 3.7705 23 14 -0.3546 -11.8991 5.9095 24 1 -1.7043 -12.4673 5.6635 25 1 0.6269 -13.0033 6.0602 26 1 -0.3790 -11.0850 7.1512 27 6 -1.0084 -7.8793 2.5077 28 6 -0.7657 -6.4357 2.9624 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5111 32 1 5.6688 1.0641 0.4091 33 1 3.5882 3.4095 0.3319 34 1 5.3785 3.5610 0.7485 35 1 5.9881 2.6541 -1.5412 36 1 4.1982 2.5018 -1.9583 37 1 2.5651 -3.1266 -0.5096 38 1 0.8649 -2.5998 -0.5028 39 1 1.1003 -4.8617 0.9427 40 1 0.4129 -4.1124 3.5775 41 1 2.1129 -4.6399 3.5698 42 1 2.6472 -6.7614 3.2478 43 1 1.6648 -8.9883 2.2205 44 1 1.8408 -9.0258 3.9925 45 1 1.7584 -11.8762 4.0066 46 1 -0.7749 -7.9804 1.4477 47 1 -2.0494 -8.1500 2.6840 48 1 -1.2301 -6.2776 3.9358 49 1 -1.2098 -5.7522 2.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508230517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:25 Heat of formation + Delta-G solvation = 119.532885 kcal Electronic energy + Delta-G solvation = -29109.190473 eV Core-core repulsion = 25075.131258 eV Total energy + Delta-G solvation = -4034.059216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41801 -39.79113 -37.85890 -37.48790 -35.05399 -34.16520 -33.16566 -32.69421 -30.98009 -29.85096 -29.26770 -27.67149 -26.67988 -24.22665 -23.99347 -22.82582 -22.70775 -21.63167 -21.08058 -20.43247 -20.01189 -17.89286 -17.51503 -17.32527 -16.34649 -16.05025 -15.78125 -15.63860 -15.49611 -15.05895 -14.94229 -14.14612 -14.08478 -13.96381 -13.77340 -13.61590 -13.54661 -13.38181 -13.15825 -12.58790 -12.41743 -12.27638 -12.07495 -11.97004 -11.79460 -11.63025 -11.42566 -11.19519 -10.95302 -10.83875 -10.77343 -10.48474 -10.38410 -10.22137 -10.15148 -9.88857 -9.85418 -9.66404 -9.40860 -9.11073 -8.73418 -8.13211 -6.80667 -5.84963 -3.24016 1.29811 2.00181 2.39930 2.43813 2.62785 3.34288 3.35885 3.41860 3.42977 3.55798 3.69644 4.06262 4.16589 4.45128 4.49354 4.54122 4.62586 4.66548 4.78051 4.84818 4.97439 5.06337 5.07768 5.26837 5.29549 5.30941 5.34149 5.48580 5.51758 5.73706 5.77208 5.82821 5.86564 5.99405 6.07565 6.08438 6.21558 6.24764 6.32385 6.44811 6.51282 6.65836 6.79497 7.09600 7.18696 7.24903 7.41400 7.66772 7.76284 7.91519 8.05763 8.32647 9.14044 9.76717 10.34285 11.25470 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.030071 B = 0.001702 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.902350 B =16449.631741 C =16882.386775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.373 5.373 3 N -0.316 5.316 4 C 0.256 3.744 5 C -0.070 4.070 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.526 5.526 9 C 0.304 3.696 10 C -0.068 4.068 11 C 0.515 3.485 12 O -0.533 6.533 13 N -0.716 5.716 14 C 0.159 3.841 15 C -0.169 4.169 16 C -0.121 4.121 17 C 0.193 3.807 18 N -0.595 5.595 19 C -0.249 4.249 20 H 0.068 0.932 21 C 0.000 4.000 22 N -0.909 5.909 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.144 3.856 28 C -0.089 4.089 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.404 0.596 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.255 0.745 46 H 0.024 0.976 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 23.019 -11.992 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 N -0.144 5.144 4 C -0.026 4.026 5 C -0.091 4.091 6 C -0.199 4.199 7 C -0.197 4.197 8 N -0.253 5.253 9 C 0.027 3.973 10 C -0.110 4.110 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.367 5.367 14 C 0.036 3.964 15 C -0.170 4.170 16 C -0.141 4.141 17 C 0.068 3.932 18 N -0.318 5.318 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.198 4.198 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.017 3.983 28 C -0.128 4.128 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.752 23.936 -11.267 26.513 hybrid contribution -0.510 -1.142 0.506 1.350 sum 1.241 22.794 -10.761 25.237 Atomic orbital electron populations 1.21976 0.73808 1.04715 1.04252 1.50060 1.07793 1.03745 1.54661 1.77915 1.01329 1.07426 1.27732 1.23027 0.92403 0.89181 0.97951 1.20056 0.93487 0.89904 1.05670 1.23042 1.03803 0.93711 0.99300 1.23035 1.03192 1.01832 0.91690 1.70217 1.19387 1.10879 1.24856 1.23257 0.86128 0.91363 0.96578 1.20202 1.05074 0.88439 0.97285 1.20074 0.77517 0.82440 0.90086 1.90774 1.49299 1.54788 1.46098 1.46125 1.68558 1.12089 1.09972 1.20478 1.00945 0.93361 0.81577 1.20478 0.96225 0.92306 1.08001 1.23319 0.97573 0.98767 0.94487 1.19779 0.85390 0.86749 1.01292 1.44110 1.00540 1.38139 1.49002 1.19136 1.00338 0.98092 1.20222 0.91399 1.24987 0.98553 0.96746 0.99522 1.69992 1.17908 1.28524 1.39021 0.86319 0.77643 0.79810 0.82709 1.20908 1.21597 1.21056 1.20988 0.94937 0.88710 0.93648 1.20784 0.92145 0.99168 1.00738 0.89920 0.88817 0.89033 0.85117 0.87896 0.87839 0.87745 0.88632 0.84869 0.86523 0.76172 0.91561 0.91524 0.88702 0.93980 0.88833 0.93495 0.95848 0.92471 0.91756 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.33 59.85 0.68 1.32 16 2 N -0.37 -4.30 4.04 -65.10 -0.26 -4.56 16 3 N -0.32 -4.21 12.24 32.42 0.40 -3.81 16 4 C 0.26 3.44 7.69 -156.86 -1.21 2.23 16 5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 6 C -0.16 -1.28 10.14 -26.69 -0.27 -1.55 16 7 C -0.16 -1.21 10.24 -26.69 -0.27 -1.48 16 8 N -0.53 -7.58 11.19 -8.16 -0.09 -7.67 16 9 C 0.30 3.70 6.48 -155.70 -1.01 2.70 16 10 C -0.07 -0.58 6.03 -29.03 -0.18 -0.75 16 11 C 0.52 6.20 7.82 -10.98 -0.09 6.11 16 12 O -0.53 -8.95 16.03 5.55 0.09 -8.86 16 13 N -0.72 -7.97 5.55 -61.47 -0.34 -8.31 16 14 C 0.16 2.19 5.66 -5.19 -0.03 2.17 16 15 C -0.17 -2.69 5.22 -100.99 -0.53 -3.21 16 16 C -0.12 -2.17 9.47 -35.78 -0.34 -2.50 16 17 C 0.19 4.36 5.23 -5.10 -0.03 4.34 16 18 N -0.59 -14.22 3.01 -173.56 -0.52 -14.75 16 19 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16 20 H 0.07 1.77 7.88 -52.48 -0.41 1.35 16 21 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16 22 N -0.91 -25.54 11.08 55.49 0.61 -24.93 16 23 Si 0.91 21.29 29.58 -169.99 -5.03 16.27 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.14 2.77 6.59 -3.44 -0.02 2.75 16 28 C -0.09 -1.43 5.95 -28.09 -0.17 -1.59 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.35 7.10 -51.92 -0.37 -0.02 16 32 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.12 0.53 7.12 -51.93 -0.37 0.16 16 39 H 0.40 3.59 8.46 -40.82 -0.35 3.24 16 40 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 41 H 0.07 1.00 7.78 -51.93 -0.40 0.59 16 42 H 0.09 1.54 7.73 -52.49 -0.41 1.14 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -35.42 407.21 -10.94 -46.37 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.67 Total: 1.74 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -4.27 Total: 2.38 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.21 Total: -64.02 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.42 -10.94 -46.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508230517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.901 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds