Wall clock time and date at job start Wed Apr 1 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40451 * 126.82004 * 2 1 4 4 C 1.30711 * 106.78864 * 180.25111 * 3 2 1 5 5 C 1.50698 * 125.52312 * 179.78343 * 4 3 2 6 6 C 1.52997 * 117.50170 * 8.70694 * 5 4 3 7 7 C 1.53001 * 117.50014 * 300.04265 * 5 4 3 8 8 N 1.33239 * 108.94914 * 359.74696 * 4 3 2 9 9 C 1.30830 * 109.82759 * 0.02562 * 8 4 3 10 10 C 1.50700 * 125.95757 * 179.97438 * 9 8 4 11 11 C 1.50700 * 109.47086 * 90.02599 * 10 9 8 12 12 O 1.21289 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00324 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00102 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47021 * 179.97438 * 14 13 11 16 16 C 1.29454 * 117.69519 * 94.99989 * 15 14 13 17 17 C 1.50322 * 123.65500 * 180.86104 * 16 15 14 18 18 N 1.47012 * 109.16271 * 349.01804 * 17 16 15 19 19 C 1.36934 * 121.37462 * 222.96812 * 18 17 16 20 20 H 1.08005 * 120.00007 * 155.96961 * 19 18 17 21 21 C 1.38818 * 120.00320 * 335.97331 * 19 18 17 22 22 N 1.31616 * 119.99424 * 344.52132 * 21 19 18 23 23 Si 1.86793 * 120.00033 * 164.52092 * 21 19 18 24 24 H 1.48499 * 109.47295 * 59.99993 * 23 21 19 25 25 H 1.48498 * 109.47025 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47357 * 299.99725 * 23 21 19 27 27 C 1.47333 * 117.24883 * 42.94994 * 18 17 16 28 28 C 1.49972 * 117.69466 * 274.74033 * 15 14 13 29 29 H 1.08993 * 109.47656 * 270.17592 * 1 2 3 30 30 H 1.08998 * 109.47127 * 30.18342 * 1 2 3 31 31 H 1.09008 * 109.46620 * 150.17750 * 1 2 3 32 32 H 1.09001 * 115.55250 * 154.37952 * 5 4 3 33 33 H 1.09001 * 117.49988 * 359.97438 * 6 5 4 34 34 H 1.08995 * 117.50114 * 145.02185 * 6 5 4 35 35 H 1.08993 * 117.50300 * 214.97967 * 7 5 4 36 36 H 1.09005 * 117.49601 * 359.97438 * 7 5 4 37 37 H 1.08996 * 109.47746 * 330.02148 * 10 9 8 38 38 H 1.09001 * 109.46956 * 210.01873 * 10 9 8 39 39 H 0.96997 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.08996 * 109.47132 * 59.99990 * 14 13 11 41 41 H 1.09001 * 109.46799 * 299.99571 * 14 13 11 42 42 H 1.07997 * 118.17426 * 0.87895 * 16 15 14 43 43 H 1.08999 * 109.52720 * 108.92650 * 17 16 15 44 44 H 1.08998 * 109.52220 * 229.11921 * 17 16 15 45 45 H 0.97005 * 119.99607 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.77712 * 57.81016 * 27 18 17 47 47 H 1.08993 * 109.77988 * 178.61344 * 27 18 17 48 48 H 1.09000 * 109.31400 * 281.28746 * 28 15 14 49 49 H 1.08991 * 109.31850 * 40.71826 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0055 5 6 4.7775 1.5290 -0.0122 6 6 4.6023 3.0350 0.1926 7 6 4.9701 2.4878 -1.1889 8 7 3.5096 -0.6555 -0.0033 9 6 2.2707 -1.0760 0.0030 10 6 1.8248 -2.5155 0.0067 11 6 1.6823 -2.9936 1.4287 12 8 1.9199 -2.2397 2.3487 13 7 1.2907 -4.2588 1.6783 14 6 1.1527 -4.7237 3.0608 15 6 0.7055 -6.1628 3.0645 16 6 1.6178 -7.0761 3.1608 17 6 1.3242 -8.5504 3.1587 18 7 -0.1250 -8.7540 3.2984 19 6 -0.6329 -9.7166 4.1294 20 1 -1.6340 -9.6175 4.5223 21 6 0.1391 -10.8199 4.4669 22 7 1.2187 -11.1055 3.7705 23 14 -0.3546 -11.8991 5.9095 24 1 -1.7043 -12.4673 5.6635 25 1 0.6269 -13.0033 6.0602 26 1 -0.3790 -11.0850 7.1512 27 6 -1.0084 -7.8793 2.5077 28 6 -0.7657 -6.4357 2.9624 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5111 32 1 5.6688 1.0641 0.4091 33 1 3.5882 3.4095 0.3319 34 1 5.3785 3.5610 0.7485 35 1 5.9881 2.6541 -1.5412 36 1 4.1982 2.5018 -1.9583 37 1 2.5651 -3.1266 -0.5096 38 1 0.8649 -2.5998 -0.5028 39 1 1.1003 -4.8617 0.9427 40 1 0.4129 -4.1124 3.5775 41 1 2.1129 -4.6399 3.5698 42 1 2.6472 -6.7614 3.2478 43 1 1.6648 -8.9883 2.2205 44 1 1.8408 -9.0258 3.9925 45 1 1.7584 -11.8762 4.0066 46 1 -0.7749 -7.9804 1.4477 47 1 -2.0494 -8.1500 2.6840 48 1 -1.2301 -6.2776 3.9358 49 1 -1.2098 -5.7522 2.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508230517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:24 Heat of formation + Delta-G solvation = 96.620050 kcal Electronic energy + Delta-G solvation = -29110.184048 eV Core-core repulsion = 25075.131258 eV Total energy + Delta-G solvation = -4035.052791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.26057 -40.82319 -39.32275 -38.17664 -36.43337 -34.91526 -34.57589 -33.71082 -32.57669 -31.41319 -30.23203 -28.55889 -27.97872 -25.80225 -24.75312 -24.36275 -23.32013 -22.96153 -22.30117 -21.29503 -20.83946 -19.48953 -18.64046 -18.07560 -17.47220 -17.21555 -16.94493 -16.77420 -16.51536 -16.33252 -15.74664 -15.63292 -15.39854 -15.18289 -14.90086 -14.64806 -14.57918 -14.28709 -14.17605 -13.92773 -13.68280 -13.25732 -13.16281 -13.10822 -12.88922 -12.76528 -12.67902 -12.57492 -12.40788 -12.25026 -12.09821 -11.88829 -11.68982 -11.48392 -11.31469 -11.18632 -11.06001 -10.75903 -10.66667 -10.19810 -10.14400 -9.63544 -8.73118 -7.87565 -5.28225 0.44370 1.16631 1.33385 1.47533 1.50133 1.53062 1.56212 1.66465 2.40081 2.51988 2.80972 2.98272 3.29759 3.35615 3.48016 3.64591 3.80971 3.87769 3.91919 3.98319 4.01778 4.06315 4.22807 4.28563 4.43078 4.45525 4.56895 4.58457 4.62164 4.67118 4.73578 4.77011 4.86913 4.89343 4.94984 5.10321 5.13204 5.22086 5.24442 5.27998 5.33841 5.35987 5.43060 5.51064 5.62595 5.77852 5.79677 6.18298 6.35165 6.50738 7.04309 7.14906 7.16865 7.85746 8.38589 9.20639 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.030071 B = 0.001702 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.902350 B =16449.631741 C =16882.386775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.375 5.375 3 N -0.340 5.340 4 C 0.240 3.760 5 C -0.098 4.098 6 C -0.152 4.152 7 C -0.141 4.141 8 N -0.564 5.564 9 C 0.294 3.706 10 C -0.059 4.059 11 C 0.520 3.480 12 O -0.584 6.584 13 N -0.703 5.703 14 C 0.169 3.831 15 C -0.137 4.137 16 C -0.142 4.142 17 C 0.204 3.796 18 N -0.615 5.615 19 C -0.257 4.257 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.965 3.035 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.282 1.282 27 C 0.138 3.862 28 C -0.083 4.083 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.419 0.581 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.016 0.984 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 24.566 -13.173 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.165 5.165 3 N -0.169 5.169 4 C -0.041 4.041 5 C -0.119 4.119 6 C -0.190 4.190 7 C -0.180 4.180 8 N -0.292 5.292 9 C 0.017 3.983 10 C -0.101 4.101 11 C 0.306 3.694 12 O -0.464 6.464 13 N -0.355 5.355 14 C 0.046 3.954 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.079 3.921 18 N -0.339 5.339 19 C -0.387 4.387 20 H 0.088 0.912 21 C -0.248 4.248 22 N -0.585 5.585 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.208 1.208 27 C 0.012 3.988 28 C -0.122 4.122 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.361 25.493 -12.487 28.389 hybrid contribution -0.195 -1.564 0.841 1.787 sum 0.166 23.929 -11.646 26.613 Atomic orbital electron populations 1.22375 0.71400 1.07184 1.04737 1.50355 1.09144 1.03144 1.53834 1.77823 1.01691 1.08850 1.28584 1.23588 0.93350 0.89436 0.97762 1.20251 0.92738 0.90691 1.08176 1.23088 1.03798 0.92210 0.99924 1.23096 1.04245 0.99652 0.90966 1.70191 1.21141 1.11599 1.26304 1.23839 0.85884 0.92783 0.95834 1.20370 1.08208 0.86368 0.95114 1.20561 0.76041 0.81812 0.90998 1.90769 1.51495 1.56130 1.48009 1.45882 1.68138 1.12238 1.09243 1.20195 1.00431 0.91611 0.83182 1.20594 0.95885 0.92996 1.04338 1.22947 0.99067 0.96182 0.98053 1.19403 0.84678 0.89523 0.98510 1.44396 1.01560 1.38393 1.49596 1.19479 1.00389 0.98494 1.20372 0.91211 1.25707 0.98930 0.98339 1.01862 1.70151 1.18998 1.28917 1.40456 0.85364 0.77344 0.78013 0.79881 1.20018 1.22168 1.20816 1.21207 0.94200 0.89747 0.93599 1.20731 0.92167 0.97601 1.01668 0.90305 0.87717 0.85362 0.84979 0.89196 0.85718 0.85344 0.89381 0.82848 0.81663 0.74377 0.91176 0.92642 0.87235 0.96618 0.92778 0.94168 0.94958 0.92343 0.92087 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 11.33 127.77 1.45 2.37 16 2 N -0.37 -8.11 4.04 -359.88 -1.45 -9.56 16 3 N -0.34 -9.02 12.24 -51.34 -0.63 -9.65 16 4 C 0.24 6.49 7.69 138.63 1.07 7.55 16 5 C -0.10 -1.98 6.33 -11.54 -0.07 -2.05 16 6 C -0.15 -2.33 10.14 30.62 0.31 -2.02 16 7 C -0.14 -2.00 10.24 30.62 0.31 -1.68 16 8 N -0.56 -16.07 11.19 -179.74 -2.01 -18.08 16 9 C 0.29 6.67 6.48 138.23 0.90 7.57 16 10 C -0.06 -0.80 6.03 29.10 0.18 -0.62 16 11 C 0.52 11.06 7.82 87.66 0.69 11.75 16 12 O -0.58 -18.83 16.03 -3.06 -0.05 -18.88 16 13 N -0.70 -13.19 5.55 -466.78 -2.59 -15.78 16 14 C 0.17 4.22 5.66 85.63 0.48 4.71 16 15 C -0.14 -4.03 5.22 -15.14 -0.08 -4.11 16 16 C -0.14 -5.01 9.47 27.11 0.26 -4.75 16 17 C 0.20 9.48 5.23 85.42 0.45 9.93 16 18 N -0.62 -29.53 3.01 -703.02 -2.11 -31.64 16 19 C -0.26 -13.79 9.71 84.04 0.82 -12.97 16 20 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 21 C -0.05 -2.94 5.01 84.86 0.43 -2.51 16 22 N -0.94 -54.46 11.08 21.65 0.24 -54.22 16 23 Si 0.97 44.39 29.58 68.60 2.03 46.42 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 C 0.14 5.07 6.59 86.32 0.57 5.64 16 28 C -0.08 -2.39 5.95 29.72 0.18 -2.21 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.13 0.41 7.10 -2.38 -0.02 0.39 16 32 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 1.61 7.88 -2.39 -0.02 1.59 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.17 0.57 7.12 -2.39 -0.02 0.55 16 39 H 0.42 5.59 8.46 -92.71 -0.78 4.80 16 40 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 41 H 0.06 1.56 7.78 -2.39 -0.02 1.54 16 42 H 0.11 3.51 7.73 -2.91 -0.02 3.49 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 2.90 6.41 -2.39 -0.02 2.89 16 45 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 46 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -81.39 407.21 1.52 -79.87 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.18 Total: 14.95 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 7.92 Total: 16.57 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -8.55 Total: -138.93 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -81.39 1.52 -79.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508230517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.490 kcal (2) G-P(sol) polarization free energy of solvation -81.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds