Wall clock time and date at job start Wed Apr 1 2020 03:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47295 * 322.77591 * 3 2 1 5 5 C 1.34774 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99637 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.00099 * 180.02562 * 5 4 3 8 8 C 1.53115 * 109.51991 * 179.97438 * 7 5 4 9 9 C 1.53033 * 109.27627 * 182.43719 * 8 7 5 10 10 N 1.46848 * 109.52544 * 59.18314 * 9 8 7 11 11 C 1.38574 * 111.00505 * 174.16189 * 10 9 8 12 12 N 1.31222 * 126.47245 * 0.03611 * 11 10 9 13 13 N 1.28529 * 109.86099 * 179.69287 * 12 11 10 14 14 C 1.30295 * 110.05286 * 0.45709 * 13 12 11 15 15 C 1.50697 * 126.34855 * 179.81564 * 14 13 12 16 16 C 1.52997 * 109.47466 * 269.69037 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 N 1.36454 * 126.47391 * 179.97438 * 11 10 9 26 26 C 1.46498 * 127.13741 * 0.02562 * 25 11 10 27 27 C 1.46853 * 111.19290 * 298.25562 * 10 9 8 28 28 C 1.53038 * 109.52325 * 61.74229 * 27 10 9 29 29 H 4.40639 * 5.51425 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46835 * 202.77209 * 3 2 1 31 31 H 1.09003 * 109.46673 * 82.77669 * 3 2 1 32 32 H 0.97001 * 120.00407 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.57248 * 300.15203 * 7 5 4 34 34 H 1.09002 * 109.50691 * 62.49778 * 8 7 5 35 35 H 1.08997 * 109.50604 * 302.37778 * 8 7 5 36 36 H 1.09002 * 109.46374 * 299.16443 * 9 8 7 37 37 H 1.09003 * 109.46677 * 179.19778 * 9 8 7 38 38 H 1.09002 * 109.47120 * 149.68790 * 15 14 13 39 39 H 1.08998 * 109.46862 * 29.69592 * 15 14 13 40 40 H 1.09002 * 109.47153 * 59.99773 * 16 15 14 41 41 H 1.09001 * 109.46832 * 299.99964 * 16 15 14 42 42 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47099 * 270.00036 * 26 25 11 44 44 H 1.09000 * 109.46763 * 30.00206 * 26 25 11 45 45 H 1.09004 * 109.47054 * 149.99855 * 26 25 11 46 46 H 1.09003 * 109.45956 * 181.75217 * 27 10 9 47 47 H 1.08994 * 109.46409 * 301.72686 * 27 10 9 48 48 H 1.08996 * 109.50618 * 180.87815 * 28 27 10 49 49 H 1.09004 * 109.50614 * 60.75786 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0989 0.8355 5 6 4.4600 -1.2941 0.9849 6 8 5.2477 -0.5596 0.4272 7 6 4.9629 -2.4256 1.8439 8 6 6.4941 -2.4258 1.8448 9 6 6.9986 -3.6126 2.6687 10 7 6.4915 -4.8631 2.0895 11 6 7.0345 -5.9643 2.7322 12 7 7.8887 -5.9435 3.7280 13 7 8.1754 -7.1452 4.0826 14 6 7.5339 -7.9970 3.3339 15 6 7.6035 -9.4993 3.4292 16 6 8.7219 -10.0167 2.5225 17 6 8.7918 -11.5190 2.6183 18 1 8.1067 -12.0516 3.2612 19 6 9.7298 -12.2137 1.8843 20 7 10.5637 -11.5652 1.1010 21 14 9.8159 -14.0759 2.0025 22 1 8.9293 -14.6787 0.9750 23 1 11.2137 -14.5224 1.7736 24 1 9.3734 -14.5073 3.3527 25 7 6.7810 -7.2750 2.4497 26 6 5.8876 -7.7998 1.4141 27 6 5.0240 -4.9061 2.1212 28 6 4.4604 -3.7579 1.2810 29 1 -1.0498 -0.0004 0.0001 30 1 3.0089 0.9484 0.3978 31 1 3.0093 -0.1284 -1.0196 32 1 2.5049 -1.6865 1.2813 33 1 4.5978 -2.3003 2.8633 34 1 6.8580 -1.4970 2.2841 35 1 6.8586 -2.5122 0.8212 36 1 6.6452 -3.5184 3.6955 37 1 8.0886 -3.6240 2.6596 38 1 6.6522 -9.9278 3.1134 39 1 7.8080 -9.7889 4.4599 40 1 9.6731 -9.5882 2.8382 41 1 8.5173 -9.7271 1.4918 42 1 11.2238 -12.0539 0.5849 43 1 4.8862 -7.9233 1.8266 44 1 5.8523 -7.1023 0.5772 45 1 6.2595 -8.7641 1.0679 46 1 4.6796 -5.8569 1.7143 47 1 4.6798 -4.8058 3.1505 48 1 3.3713 -3.7807 1.3174 49 1 4.7929 -3.8652 0.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519964081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:47 Heat of formation + Delta-G solvation = 95.727294 kcal Electronic energy + Delta-G solvation = -29481.754999 eV Core-core repulsion = 25446.663496 eV Total energy + Delta-G solvation = -4035.091503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.63340 -40.66276 -38.74742 -36.00852 -34.91574 -34.49182 -33.59309 -32.97176 -31.58470 -31.22866 -28.83518 -27.83717 -27.33874 -25.44548 -25.03675 -23.56876 -21.83492 -21.65573 -20.84259 -20.18872 -19.78978 -19.15815 -17.56445 -17.19290 -16.57755 -16.48869 -16.20581 -15.90109 -15.79609 -15.12930 -14.88933 -14.64021 -14.50126 -14.23218 -13.90071 -13.77777 -13.45991 -13.43587 -13.16678 -13.04484 -12.79968 -12.42458 -12.29172 -11.91303 -11.58862 -11.40631 -11.38007 -11.19038 -11.08317 -11.06644 -10.99596 -10.91612 -10.70616 -10.33678 -10.13536 -10.04224 -9.88950 -9.73436 -9.61226 -9.38771 -9.22215 -8.41566 -7.91163 -6.05456 -4.09982 1.82334 2.11404 2.14062 2.22812 2.48168 2.98000 3.25565 3.28781 3.36100 3.39180 3.64227 3.67015 4.10247 4.21456 4.35361 4.40785 4.62188 4.76780 4.84852 4.91382 4.96672 5.02224 5.03495 5.05735 5.10510 5.15373 5.19655 5.26960 5.30391 5.33421 5.43464 5.53302 5.56912 5.59691 5.72190 5.78201 5.87665 6.05456 6.19524 6.32185 6.45348 6.63891 6.69616 6.89600 6.92350 6.94899 7.40318 7.55401 7.69294 7.72297 7.91874 8.29047 8.96261 9.20915 9.54686 11.05502 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.001804 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.189084 B =15518.692346 C =16026.966437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.212 4.212 3 C 0.230 3.770 4 N -0.732 5.732 5 C 0.523 3.477 6 O -0.531 6.531 7 C -0.109 4.109 8 C -0.097 4.097 9 C 0.074 3.926 10 N -0.447 5.447 11 C 0.335 3.665 12 N -0.323 5.323 13 N -0.294 5.294 14 C 0.212 3.788 15 C -0.030 4.030 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.895 3.105 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 N -0.483 5.483 26 C 0.074 3.926 27 C 0.051 3.949 28 C -0.105 4.105 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 21.401 -1.886 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.212 4.212 3 C 0.107 3.893 4 N -0.385 5.385 5 C 0.310 3.690 6 O -0.406 6.406 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.053 4.053 10 N -0.172 5.172 11 C -0.022 4.022 12 N -0.168 5.168 13 N -0.132 5.132 14 C -0.055 4.055 15 C -0.070 4.070 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.179 5.179 26 C -0.069 4.069 27 C -0.077 4.077 28 C -0.143 4.143 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.629 22.479 -1.849 30.567 hybrid contribution -1.570 -1.720 -0.298 2.348 sum -22.200 20.759 -2.147 30.469 Atomic orbital electron populations 1.25070 0.95996 0.98290 0.99270 1.22920 0.94270 1.02287 1.01762 1.18072 0.83107 0.91399 0.96690 1.46036 1.07516 1.33244 1.51683 1.20665 0.81481 0.85542 0.81305 1.90738 1.55125 1.47157 1.47577 1.21466 0.98629 0.93184 0.99790 1.21499 0.91741 0.97698 1.02611 1.22056 1.01937 0.85161 0.96178 1.58576 1.07134 0.99847 1.51599 1.22412 1.00852 0.83245 0.95644 1.74498 1.16241 1.15609 1.10434 1.73995 1.21441 0.94672 1.23131 1.25558 0.92501 0.98309 0.89174 1.20428 1.02171 0.80589 1.03829 1.19078 0.92421 0.95833 0.93386 1.21138 1.17479 0.91398 1.26336 0.92301 1.25017 0.95437 0.98597 0.95221 1.69974 1.19705 1.35651 1.27614 0.86553 0.77309 0.85446 0.78451 1.20700 1.21174 1.19740 1.46051 1.36930 1.05373 1.29522 1.22111 0.92754 1.02256 0.89776 1.22335 0.85411 1.00085 0.99825 1.21597 1.00063 0.91736 1.00941 0.76104 0.88998 0.88933 0.76158 0.88211 0.89780 0.89756 0.92886 0.88479 0.91289 0.89304 0.95573 0.96756 0.92848 0.90815 0.89273 0.88040 0.89584 0.93237 0.90403 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 19.25 29.55 0.57 -0.18 16 2 C -0.21 -1.20 13.46 -37.12 -0.50 -1.70 16 3 C 0.23 1.35 6.15 -6.83 -0.04 1.31 16 4 N -0.73 -4.17 5.44 -63.16 -0.34 -4.52 16 5 C 0.52 4.25 7.16 -10.98 -0.08 4.17 16 6 O -0.53 -6.36 15.98 5.56 0.09 -6.27 16 7 C -0.11 -0.75 2.59 -91.65 -0.24 -0.99 16 8 C -0.10 -0.88 4.68 -26.65 -0.12 -1.01 16 9 C 0.07 0.82 4.88 -3.84 -0.02 0.80 16 10 N -0.45 -5.51 4.70 -174.55 -0.82 -6.33 16 11 C 0.33 5.50 7.22 -318.88 -2.30 3.19 16 12 N -0.32 -6.38 11.24 30.31 0.34 -6.04 16 13 N -0.29 -6.38 12.18 32.99 0.40 -5.98 16 14 C 0.21 4.18 7.32 -154.01 -1.13 3.06 16 15 C -0.03 -0.61 5.36 -27.89 -0.15 -0.76 16 16 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 17 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 N -0.48 -7.90 3.21 -121.46 -0.39 -8.29 16 26 C 0.07 0.87 9.15 59.85 0.55 1.42 16 27 C 0.05 0.44 5.28 -3.83 -0.02 0.42 16 28 C -0.11 -0.65 5.26 -26.65 -0.14 -0.79 16 29 H 0.22 0.26 7.80 -54.10 -0.42 -0.16 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.40 1.45 7.94 -40.82 -0.32 1.13 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.26 7.92 -51.93 -0.41 0.85 16 38 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 39 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 44 H 0.09 0.90 7.64 -51.93 -0.40 0.50 16 45 H 0.10 1.30 7.88 -51.93 -0.41 0.89 16 46 H 0.09 0.69 5.20 -51.93 -0.27 0.42 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.28 7.66 -51.93 -0.40 -0.12 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -36.18 407.39 -10.67 -46.85 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.63 Total: -2.49 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.17 Total: -3.42 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.07 Total: -56.88 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.09 Total: -6.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.18 -10.67 -46.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519964081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.576 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds