Wall clock time and date at job start Wed Apr 1 2020 03:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47295 * 322.77591 * 3 2 1 5 5 C 1.34774 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99637 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.00099 * 180.02562 * 5 4 3 8 8 C 1.53115 * 109.51991 * 179.97438 * 7 5 4 9 9 C 1.53033 * 109.27627 * 182.43719 * 8 7 5 10 10 N 1.46848 * 109.52544 * 59.18314 * 9 8 7 11 11 C 1.38574 * 111.00505 * 174.16189 * 10 9 8 12 12 N 1.31222 * 126.47245 * 0.03611 * 11 10 9 13 13 N 1.28529 * 109.86099 * 179.69287 * 12 11 10 14 14 C 1.30295 * 110.05286 * 0.45709 * 13 12 11 15 15 C 1.50697 * 126.34855 * 179.81564 * 14 13 12 16 16 C 1.52997 * 109.47466 * 269.69037 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 N 1.36454 * 126.47391 * 179.97438 * 11 10 9 26 26 C 1.46498 * 127.13741 * 0.02562 * 25 11 10 27 27 C 1.46853 * 111.19290 * 298.25562 * 10 9 8 28 28 C 1.53038 * 109.52325 * 61.74229 * 27 10 9 29 29 H 4.40639 * 5.51425 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46835 * 202.77209 * 3 2 1 31 31 H 1.09003 * 109.46673 * 82.77669 * 3 2 1 32 32 H 0.97001 * 120.00407 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.57248 * 300.15203 * 7 5 4 34 34 H 1.09002 * 109.50691 * 62.49778 * 8 7 5 35 35 H 1.08997 * 109.50604 * 302.37778 * 8 7 5 36 36 H 1.09002 * 109.46374 * 299.16443 * 9 8 7 37 37 H 1.09003 * 109.46677 * 179.19778 * 9 8 7 38 38 H 1.09002 * 109.47120 * 149.68790 * 15 14 13 39 39 H 1.08998 * 109.46862 * 29.69592 * 15 14 13 40 40 H 1.09002 * 109.47153 * 59.99773 * 16 15 14 41 41 H 1.09001 * 109.46832 * 299.99964 * 16 15 14 42 42 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47099 * 270.00036 * 26 25 11 44 44 H 1.09000 * 109.46763 * 30.00206 * 26 25 11 45 45 H 1.09004 * 109.47054 * 149.99855 * 26 25 11 46 46 H 1.09003 * 109.45956 * 181.75217 * 27 10 9 47 47 H 1.08994 * 109.46409 * 301.72686 * 27 10 9 48 48 H 1.08996 * 109.50618 * 180.87815 * 28 27 10 49 49 H 1.09004 * 109.50614 * 60.75786 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0989 0.8355 5 6 4.4600 -1.2941 0.9849 6 8 5.2477 -0.5596 0.4272 7 6 4.9629 -2.4256 1.8439 8 6 6.4941 -2.4258 1.8448 9 6 6.9986 -3.6126 2.6687 10 7 6.4915 -4.8631 2.0895 11 6 7.0345 -5.9643 2.7322 12 7 7.8887 -5.9435 3.7280 13 7 8.1754 -7.1452 4.0826 14 6 7.5339 -7.9970 3.3339 15 6 7.6035 -9.4993 3.4292 16 6 8.7219 -10.0167 2.5225 17 6 8.7918 -11.5190 2.6183 18 1 8.1067 -12.0516 3.2612 19 6 9.7298 -12.2137 1.8843 20 7 10.5637 -11.5652 1.1010 21 14 9.8159 -14.0759 2.0025 22 1 8.9293 -14.6787 0.9750 23 1 11.2137 -14.5224 1.7736 24 1 9.3734 -14.5073 3.3527 25 7 6.7810 -7.2750 2.4497 26 6 5.8876 -7.7998 1.4141 27 6 5.0240 -4.9061 2.1212 28 6 4.4604 -3.7579 1.2810 29 1 -1.0498 -0.0004 0.0001 30 1 3.0089 0.9484 0.3978 31 1 3.0093 -0.1284 -1.0196 32 1 2.5049 -1.6865 1.2813 33 1 4.5978 -2.3003 2.8633 34 1 6.8580 -1.4970 2.2841 35 1 6.8586 -2.5122 0.8212 36 1 6.6452 -3.5184 3.6955 37 1 8.0886 -3.6240 2.6596 38 1 6.6522 -9.9278 3.1134 39 1 7.8080 -9.7889 4.4599 40 1 9.6731 -9.5882 2.8382 41 1 8.5173 -9.7271 1.4918 42 1 11.2238 -12.0539 0.5849 43 1 4.8862 -7.9233 1.8266 44 1 5.8523 -7.1023 0.5772 45 1 6.2595 -8.7641 1.0679 46 1 4.6796 -5.8569 1.7143 47 1 4.6798 -4.8058 3.1505 48 1 3.3713 -3.7807 1.3174 49 1 4.7929 -3.8652 0.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519964081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:46 Heat of formation + Delta-G solvation = 73.102297 kcal Electronic energy + Delta-G solvation = -29482.736093 eV Core-core repulsion = 25446.663496 eV Total energy + Delta-G solvation = -4036.072597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.99298 -41.35348 -39.59664 -36.55175 -36.39449 -35.80502 -34.90017 -33.60813 -33.20783 -31.99619 -30.21182 -28.81246 -28.21277 -27.13554 -25.96087 -24.47789 -23.51820 -22.66300 -21.74119 -21.38117 -20.78028 -19.59218 -18.67130 -18.35069 -17.86079 -17.43868 -17.28953 -16.94070 -16.54250 -16.44970 -16.08606 -15.62417 -15.25790 -15.16473 -14.90963 -14.76494 -14.53522 -14.35064 -14.24623 -14.12039 -14.02572 -13.77972 -13.28140 -13.15994 -12.84532 -12.74847 -12.63153 -12.45560 -12.28245 -12.08317 -11.89063 -11.81701 -11.77715 -11.64722 -11.46537 -11.38630 -11.26376 -11.10478 -10.79854 -10.68392 -10.56053 -10.14445 -9.22187 -8.19065 -6.31758 0.80367 1.26806 1.42058 1.43951 1.46081 1.55680 1.57046 1.82522 1.83734 2.43009 2.49086 2.59761 3.15203 3.35705 3.47389 3.48244 3.60539 3.74027 3.79399 3.93036 4.07574 4.14582 4.21264 4.30131 4.31853 4.42508 4.46880 4.50148 4.55528 4.56642 4.65964 4.68484 4.72107 4.79444 4.82798 4.90117 4.97112 5.01255 5.09793 5.13676 5.23933 5.32919 5.45903 5.52942 5.60608 5.72322 5.79849 6.15655 6.20684 6.46177 6.57977 6.84772 7.16526 7.38518 7.78407 8.92884 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.001804 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.189084 B =15518.692346 C =16026.966437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.246 4.246 3 C 0.230 3.770 4 N -0.716 5.716 5 C 0.526 3.474 6 O -0.576 6.576 7 C -0.103 4.103 8 C -0.088 4.088 9 C 0.078 3.922 10 N -0.449 5.449 11 C 0.353 3.647 12 N -0.363 5.363 13 N -0.333 5.333 14 C 0.195 3.805 15 C -0.013 4.013 16 C 0.041 3.959 17 C -0.538 4.538 18 H 0.074 0.926 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.260 1.260 25 N -0.480 5.480 26 C 0.065 3.935 27 C 0.047 3.953 28 C -0.096 4.096 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.087 0.913 40 H -0.020 1.020 41 H -0.006 1.006 42 H 0.263 0.737 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.116 0.884 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.478 20.887 -1.982 33.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.247 4.247 3 C 0.108 3.892 4 N -0.369 5.369 5 C 0.314 3.686 6 O -0.455 6.455 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.049 4.049 10 N -0.174 5.174 11 C -0.004 4.004 12 N -0.208 5.208 13 N -0.171 5.171 14 C -0.075 4.075 15 C -0.052 4.052 16 C 0.003 3.997 17 C -0.576 4.576 18 H 0.092 0.908 19 C -0.199 4.199 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.184 1.184 25 N -0.175 5.175 26 C -0.076 4.076 27 C -0.079 4.079 28 C -0.134 4.134 29 H 0.267 0.733 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.106 0.894 40 H -0.002 1.002 41 H 0.013 0.987 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.076 0.924 48 H 0.134 0.866 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.756 21.961 -1.941 33.150 hybrid contribution -0.386 -1.415 -0.344 1.507 sum -25.143 20.546 -2.285 32.550 Atomic orbital electron populations 1.25840 0.96738 0.96586 0.97567 1.22985 0.94483 1.03870 1.03335 1.17981 0.83760 0.91170 0.96310 1.45905 1.06947 1.33082 1.50953 1.20790 0.81823 0.85236 0.80789 1.90730 1.56378 1.48853 1.49504 1.21425 0.96667 0.93324 1.00978 1.21366 0.93776 0.96534 1.00989 1.22009 1.00556 0.85486 0.96867 1.58765 1.09649 0.98721 1.50262 1.22824 0.99121 0.84321 0.94132 1.74390 1.18538 1.15036 1.12807 1.73873 1.22562 0.95776 1.24870 1.25291 0.93735 0.97983 0.90448 1.20110 1.01441 0.81255 1.02421 1.18851 0.92248 0.95358 0.93249 1.21608 1.17559 0.92360 1.26107 0.90765 1.26019 0.94996 1.04077 0.94763 1.70134 1.20678 1.37852 1.28851 0.85380 0.77183 0.78859 0.79210 1.19372 1.21494 1.18362 1.46194 1.36831 1.04974 1.29547 1.22483 0.93570 1.01965 0.89533 1.22556 0.82397 1.01890 1.01038 1.21603 1.02139 0.89873 0.99749 0.73284 0.89528 0.89570 0.74586 0.85813 0.89677 0.91497 0.92472 0.91163 0.88239 0.89446 1.00183 0.98737 0.92871 0.86893 0.87400 0.89248 0.88293 0.92374 0.86563 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 19.25 74.32 1.43 0.52 16 2 C -0.25 -2.32 13.46 31.13 0.42 -1.91 16 3 C 0.23 2.48 6.15 84.58 0.52 3.00 16 4 N -0.72 -6.65 5.44 -472.13 -2.57 -9.22 16 5 C 0.53 7.73 7.16 87.66 0.63 8.36 16 6 O -0.58 -13.72 15.98 -3.03 -0.05 -13.77 16 7 C -0.10 -1.17 2.59 -11.46 -0.03 -1.20 16 8 C -0.09 -1.56 4.68 30.64 0.14 -1.42 16 9 C 0.08 1.73 4.88 86.32 0.42 2.15 16 10 N -0.45 -10.56 4.70 -706.14 -3.32 -13.88 16 11 C 0.35 11.50 7.22 260.11 1.88 13.37 16 12 N -0.36 -14.74 11.24 -58.01 -0.65 -15.39 16 13 N -0.33 -14.94 12.18 -49.54 -0.60 -15.54 16 14 C 0.19 7.79 7.32 137.64 1.01 8.80 16 15 C -0.01 -0.51 5.36 29.85 0.16 -0.35 16 16 C 0.04 2.16 4.95 29.85 0.15 2.31 16 17 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 18 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 19 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 20 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 21 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 N -0.48 -15.33 3.21 -538.18 -1.73 -17.06 16 26 C 0.07 1.38 9.15 127.77 1.17 2.55 16 27 C 0.05 0.66 5.28 86.33 0.46 1.12 16 28 C -0.10 -0.84 5.26 30.65 0.16 -0.68 16 29 H 0.25 -0.34 7.80 -4.43 -0.03 -0.38 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.42 1.60 7.94 -92.71 -0.74 0.87 16 33 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.94 7.92 -2.39 -0.02 1.92 16 38 H 0.10 3.36 7.92 -2.39 -0.02 3.34 16 39 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 40 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.11 1.52 7.75 -2.39 -0.02 1.51 16 44 H 0.11 1.87 7.64 -2.39 -0.02 1.85 16 45 H 0.09 2.16 7.88 -2.38 -0.02 2.14 16 46 H 0.10 1.17 5.20 -2.39 -0.01 1.15 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.12 0.22 7.66 -2.39 -0.02 0.20 16 49 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -83.25 407.39 2.82 -80.43 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.22 Total: 8.10 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 9.21 Total: 7.88 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -8.59 Total: -127.80 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.05 Total: -13.77 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -83.25 2.82 -80.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519964081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.535 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds