Wall clock time and date at job start Wed Apr 1 2020 03:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46500 * 109.46998 * 2 1
4 4 C 1.36738 * 127.13509 * 269.69133 * 3 2 1
5 5 C 1.50697 * 126.34975 * 359.95850 * 4 3 2
6 6 C 1.52996 * 109.47245 * 90.00285 * 5 4 3
7 7 C 1.50707 * 109.47244 * 179.97438 * 6 5 4
8 8 H 1.08001 * 119.99766 * 359.97438 * 7 6 5
9 9 C 1.37874 * 119.99860 * 179.97438 * 7 6 5
10 10 N 1.31517 * 120.00053 * 0.02562 * 9 7 6
11 11 Si 1.86804 * 119.99763 * 180.02562 * 9 7 6
12 12 H 1.48503 * 109.46629 * 90.00497 * 11 9 7
13 13 H 1.48500 * 109.47154 * 210.00197 * 11 9 7
14 14 H 1.48500 * 109.47205 * 330.00136 * 11 9 7
15 15 N 1.30300 * 107.30575 * 179.83229 * 4 3 2
16 16 N 1.28535 * 110.05108 * 0.44082 * 15 4 3
17 17 C 1.31218 * 109.85519 * 359.71448 * 16 15 4
18 18 N 1.38587 * 126.46745 * 179.97438 * 17 16 15
19 19 C 1.47445 * 111.00103 * 239.90014 * 18 17 16
20 20 C 1.54316 * 107.23401 * 123.25567 * 19 18 17
21 21 C 1.55150 * 103.01630 * 22.28922 * 20 19 18
22 22 C 1.47848 * 111.00128 * 0.74704 * 18 17 16
23 23 H 1.09003 * 110.37125 * 332.46376 * 22 18 17
24 24 C 1.50689 * 110.37461 * 94.80341 * 22 18 17
25 25 N 1.30528 * 126.34630 * 44.69392 * 24 22 18
26 26 N 1.28589 * 109.67142 * 179.82330 * 25 24 22
27 27 C 1.30524 * 109.67889 * 0.44494 * 26 25 24
28 28 N 1.35492 * 126.34822 * 224.99576 * 24 22 18
29 29 C 1.46499 * 126.98029 * 0.02562 * 28 24 22
30 30 H 1.09000 * 109.47050 * 299.99945 * 1 2 3
31 31 H 1.09001 * 109.46801 * 60.00058 * 1 2 3
32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
33 33 H 1.08993 * 109.46955 * 120.00226 * 2 1 3
34 34 H 1.09000 * 109.47050 * 240.00054 * 2 1 3
35 35 H 1.09001 * 109.47296 * 210.00668 * 5 4 3
36 36 H 1.09006 * 109.46962 * 330.00045 * 5 4 3
37 37 H 1.08996 * 109.47565 * 300.00028 * 6 5 4
38 38 H 1.09004 * 109.46851 * 60.00188 * 6 5 4
39 39 H 0.97005 * 119.99860 * 179.97438 * 10 9 7
40 40 H 1.08990 * 109.89083 * 242.66719 * 19 18 17
41 41 H 1.08999 * 109.88478 * 3.85675 * 19 18 17
42 42 H 1.08995 * 110.70649 * 140.66610 * 20 19 18
43 43 H 1.08999 * 110.70969 * 263.72962 * 20 19 18
44 44 H 1.08995 * 110.99113 * 82.43355 * 21 20 19
45 45 H 1.08998 * 110.98886 * 206.25483 * 21 20 19
46 46 H 1.08000 * 126.35077 * 179.73577 * 27 26 25
47 47 H 1.08998 * 109.47420 * 89.99371 * 29 28 24
48 48 H 1.09000 * 109.46947 * 209.99469 * 29 28 24
49 49 H 1.08997 * 109.46648 * 329.99128 * 29 28 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2990 2.1575 -1.0901
5 6 2.1644 1.7508 -2.5349
6 6 0.7587 2.0932 -3.0322
7 6 0.6242 1.6869 -4.4773
8 1 1.4583 1.2306 -4.9897
9 6 -0.5634 1.8979 -5.1450
10 7 -1.5788 2.4540 -4.5211
11 14 -0.7302 1.3937 -6.9360
12 1 -1.2230 -0.0051 -7.0125
13 1 -1.6937 2.2958 -7.6165
14 1 0.5933 1.4895 -7.6026
15 7 2.7019 3.3152 -0.6481
16 7 2.7037 3.3199 0.6372
17 6 2.2929 2.1579 1.0877
18 7 2.1631 1.7891 2.4173
19 6 3.0153 0.6269 2.7289
20 6 3.9432 1.0389 3.8911
21 6 3.1775 2.2173 4.5486
22 6 2.5382 2.9023 3.3150
23 1 3.2610 3.5562 2.8270
24 6 1.3151 3.6822 3.7231
25 7 0.1726 3.1830 4.1093
26 7 -0.6454 4.1362 4.3844
27 6 -0.0652 5.2869 4.1772
28 7 1.1957 5.0315 3.7517
29 6 2.2213 6.0148 3.3946
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 0.8899
34 1 1.8934 -0.5138 -0.8900
35 1 2.9019 2.2858 -3.1332
36 1 2.3312 0.6775 -2.6272
37 1 0.0212 1.5582 -2.4340
38 1 0.5920 3.1664 -2.9399
39 1 -2.4143 2.6028 -4.9910
40 1 2.3955 -0.2172 3.0306
41 1 3.6108 0.3593 1.8561
42 1 4.0653 0.2172 4.5966
43 1 4.9113 1.3678 3.5134
44 1 2.4118 1.8519 5.2329
45 1 3.8642 2.8931 5.0583
46 1 -0.5078 6.2618 4.3188
47 1 2.1452 6.2499 2.3330
48 1 2.0735 6.9226 3.9794
49 1 3.2083 5.6032 3.6057
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001520981177.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:37:01
Heat of formation + Delta-G solvation = 168.620356 kcal
Electronic energy + Delta-G solvation = -31449.812712 eV
Core-core repulsion = 27450.174840 eV
Total energy + Delta-G solvation = -3999.637872 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.197 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-43.13674 -42.65115 -39.32144 -35.57145 -35.06655 -34.12856 -32.65168 -31.71777
-31.34980 -30.14091 -28.63505 -28.10357 -27.64169 -25.32619 -24.05845 -23.29193
-22.37126 -22.12431 -21.64690 -21.25790 -19.95682 -19.51147 -17.40570 -17.36140
-16.67436 -16.34292 -16.21185 -15.97358 -15.38088 -15.05807 -14.54857 -14.44678
-14.17625 -13.93757 -13.74021 -13.48646 -13.16141 -13.10724 -13.05007 -12.76840
-12.64258 -12.26295 -12.10148 -11.99421 -11.72968 -11.45283 -11.30074 -11.26322
-11.16096 -10.97796 -10.95289 -10.70808 -10.42436 -10.28881 -10.18561 -9.99784
-9.87797 -9.75541 -9.37758 -9.21129 -9.19977 -8.40399 -7.95883 -6.04853
-4.09357 1.70678 2.11495 2.31028 2.56672 2.93612 3.22703 3.29104
3.36175 3.39037 3.62646 3.95741 4.18587 4.35943 4.41168 4.45177
4.55951 4.56724 4.71103 4.79540 4.90833 4.96417 5.03533 5.14372
5.17514 5.25401 5.27510 5.28991 5.30882 5.34771 5.43055 5.45183
5.56835 5.65093 5.75204 5.82204 5.88052 5.99176 6.10008 6.19166
6.35689 6.42412 6.46701 6.51867 6.66801 6.79146 6.89861 7.40172
7.59307 7.69289 7.92452 8.29417 8.79081 8.96691 9.15817 9.55191
11.06036
Molecular weight = 345.20amu
Principal moments of inertia in cm(-1)
A = 0.013665 B = 0.003042 C = 0.002806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.585588 B = 9202.857850 C = 9975.296057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.109 3.891
3 N -0.474 5.474
4 C 0.214 3.786
5 C -0.030 4.030
6 C 0.031 3.969
7 C -0.525 4.525
8 H 0.058 0.942
9 C 0.060 3.940
10 N -0.891 5.891
11 Si 0.894 3.106
12 H -0.280 1.280
13 H -0.286 1.286
14 H -0.273 1.273
15 N -0.296 5.296
16 N -0.333 5.333
17 C 0.334 3.666
18 N -0.425 5.425
19 C 0.044 3.956
20 C -0.136 4.136
21 C -0.118 4.118
22 C 0.175 3.825
23 H 0.102 0.898
24 C 0.192 3.808
25 N -0.269 5.269
26 N -0.301 5.301
27 C 0.146 3.854
28 N -0.469 5.469
29 C 0.072 3.928
30 H 0.064 0.936
31 H 0.079 0.921
32 H 0.074 0.926
33 H 0.087 0.913
34 H 0.096 0.904
35 H 0.087 0.913
36 H 0.069 0.931
37 H 0.018 0.982
38 H 0.023 0.977
39 H 0.262 0.738
40 H 0.095 0.905
41 H 0.064 0.936
42 H 0.088 0.912
43 H 0.075 0.925
44 H 0.091 0.909
45 H 0.085 0.915
46 H 0.217 0.783
47 H 0.090 0.910
48 H 0.091 0.909
49 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.383 -0.576 20.634 24.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.013 4.013
3 N -0.168 5.168
4 C -0.053 4.053
5 C -0.070 4.070
6 C -0.007 4.007
7 C -0.563 4.563
8 H 0.077 0.923
9 C -0.142 4.142
10 N -0.529 5.529
11 Si 0.721 3.279
12 H -0.206 1.206
13 H -0.212 1.212
14 H -0.198 1.198
15 N -0.134 5.134
16 N -0.178 5.178
17 C -0.023 4.023
18 N -0.149 5.149
19 C -0.082 4.082
20 C -0.175 4.175
21 C -0.157 4.157
22 C 0.065 3.935
23 H 0.119 0.881
24 C -0.076 4.076
25 N -0.109 5.109
26 N -0.141 5.141
27 C -0.141 4.141
28 N -0.160 5.160
29 C -0.071 4.071
30 H 0.083 0.917
31 H 0.098 0.902
32 H 0.093 0.907
33 H 0.106 0.894
34 H 0.114 0.886
35 H 0.106 0.894
36 H 0.087 0.913
37 H 0.037 0.963
38 H 0.042 0.958
39 H 0.071 0.929
40 H 0.114 0.886
41 H 0.083 0.917
42 H 0.107 0.893
43 H 0.094 0.906
44 H 0.110 0.890
45 H 0.104 0.896
46 H 0.233 0.767
47 H 0.109 0.891
48 H 0.109 0.891
49 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 11.121 -0.230 21.051 23.809
hybrid contribution 0.687 -0.212 -1.563 1.721
sum 11.808 -0.442 19.487 22.790
Atomic orbital electron populations
1.22204 0.93177 1.03197 1.04506 1.21874 0.96839 0.78685 1.03951
1.46256 1.50928 1.14148 1.05514 1.25531 0.99588 0.87781 0.92419
1.20434 1.03491 1.00502 0.82597 1.19118 0.87905 0.97810 0.95889
1.21125 0.98350 1.40834 0.95976 0.92348 1.25007 0.95875 0.95058
0.98256 1.69978 1.03224 1.42932 1.36785 0.86572 0.78026 0.78356
0.84925 1.20648 1.21185 1.19753 1.73945 1.20295 1.17423 1.01721
1.74301 1.21900 1.17138 1.04423 1.22414 1.02588 0.90255 0.87048
1.59770 1.51919 1.06305 0.96878 1.23018 0.93972 0.92749 0.98507
1.22781 0.98435 0.98869 0.97379 1.22790 0.99729 0.97095 0.96054
1.20613 0.89520 0.90707 0.92678 0.88056 1.24182 0.98492 0.80888
1.04083 1.74246 0.97976 1.23255 1.15445 1.74283 1.24814 0.95775
1.19193 1.26395 0.82778 1.01866 1.03076 1.46105 1.13165 1.07478
1.49243 1.22140 0.90318 0.91173 1.03426 0.91679 0.90193 0.90702
0.89428 0.88564 0.89412 0.91292 0.96340 0.95822 0.92852 0.88633
0.91709 0.89326 0.90618 0.89022 0.89634 0.76677 0.89126 0.89078
0.89269
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16
2 C 0.11 1.48 6.53 -4.04 -0.03 1.45 16
3 N -0.47 -8.06 2.76 -114.08 -0.31 -8.37 16
4 C 0.21 4.26 7.32 -154.01 -1.13 3.13 16
5 C -0.03 -0.62 5.53 -27.89 -0.15 -0.77 16
6 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16
7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16
8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16
9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
10 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16
11 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16
12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
14 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16
15 N -0.30 -6.27 12.18 32.99 0.40 -5.87 16
16 N -0.33 -6.31 10.72 30.31 0.32 -5.99 16
17 C 0.33 5.62 6.86 -318.87 -2.19 3.43 16
18 N -0.43 -5.80 4.86 -165.15 -0.80 -6.60 16
19 C 0.04 0.43 5.22 -2.84 -0.01 0.42 16
20 C -0.14 -0.96 6.94 -24.90 -0.17 -1.13 16
21 C -0.12 -0.97 6.48 -24.59 -0.16 -1.13 16
22 C 0.18 2.10 2.51 -67.34 -0.17 1.93 16
23 H 0.10 1.24 6.00 -51.93 -0.31 0.93 16
24 C 0.19 2.69 6.93 -154.99 -1.07 1.62 16
25 N -0.27 -4.54 12.21 32.79 0.40 -4.14 16
26 N -0.30 -4.90 12.21 29.69 0.36 -4.54 16
27 C 0.15 1.78 12.74 -89.94 -1.15 0.63 16
28 N -0.47 -5.51 3.15 -122.69 -0.39 -5.90 16
29 C 0.07 0.55 10.86 59.85 0.65 1.20 16
30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
31 H 0.08 1.50 6.27 -51.93 -0.33 1.18 16
32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
33 H 0.09 0.93 5.95 -51.93 -0.31 0.62 16
34 H 0.10 1.20 7.24 -51.93 -0.38 0.82 16
35 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16
36 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16
37 H 0.02 0.49 6.27 -51.93 -0.33 0.17 16
38 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16
39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16
40 H 0.10 0.82 7.95 -51.93 -0.41 0.40 16
41 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16
42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
44 H 0.09 0.84 8.05 -51.93 -0.42 0.43 16
45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
46 H 0.22 1.60 8.06 -52.49 -0.42 1.17 16
47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
48 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
49 H 0.09 0.55 7.43 -51.93 -0.39 0.16 16
LS Contribution 396.80 15.07 5.98 5.98
Total: -1.00 -37.52 396.80 -11.45 -48.96
By element:
Atomic # 1 Polarization: 7.42 SS G_CDS: -7.38 Total: 0.05 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -5.75 Total: -3.88 kcal
Atomic # 7 Polarization: -68.07 SS G_CDS: 0.72 Total: -67.35 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -37.52 -11.45 -48.96 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001520981177.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 217.581 kcal
(2) G-P(sol) polarization free energy of solvation -37.515 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) 168.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds