Wall clock time and date at job start Wed Apr 1 2020 03:37:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46500 * 109.46998 * 2 1
4 4 C 1.36738 * 127.13509 * 269.69133 * 3 2 1
5 5 C 1.50697 * 126.34975 * 359.95850 * 4 3 2
6 6 C 1.52996 * 109.47245 * 90.00285 * 5 4 3
7 7 C 1.50707 * 109.47244 * 179.97438 * 6 5 4
8 8 H 1.08001 * 119.99766 * 359.97438 * 7 6 5
9 9 C 1.37874 * 119.99860 * 179.97438 * 7 6 5
10 10 N 1.31517 * 120.00053 * 0.02562 * 9 7 6
11 11 Si 1.86804 * 119.99763 * 180.02562 * 9 7 6
12 12 H 1.48503 * 109.46629 * 90.00497 * 11 9 7
13 13 H 1.48500 * 109.47154 * 210.00197 * 11 9 7
14 14 H 1.48500 * 109.47205 * 330.00136 * 11 9 7
15 15 N 1.30300 * 107.30575 * 179.83229 * 4 3 2
16 16 N 1.28535 * 110.05108 * 0.44082 * 15 4 3
17 17 C 1.31218 * 109.85519 * 359.71448 * 16 15 4
18 18 N 1.38587 * 126.46745 * 179.97438 * 17 16 15
19 19 C 1.47445 * 111.00103 * 239.90014 * 18 17 16
20 20 C 1.54316 * 107.23401 * 123.25567 * 19 18 17
21 21 C 1.55150 * 103.01630 * 22.28922 * 20 19 18
22 22 C 1.47848 * 111.00128 * 0.74704 * 18 17 16
23 23 H 1.09003 * 110.37125 * 332.46376 * 22 18 17
24 24 C 1.50689 * 110.37461 * 94.80341 * 22 18 17
25 25 N 1.30528 * 126.34630 * 44.69392 * 24 22 18
26 26 N 1.28589 * 109.67142 * 179.82330 * 25 24 22
27 27 C 1.30524 * 109.67889 * 0.44494 * 26 25 24
28 28 N 1.35492 * 126.34822 * 224.99576 * 24 22 18
29 29 C 1.46499 * 126.98029 * 0.02562 * 28 24 22
30 30 H 1.09000 * 109.47050 * 299.99945 * 1 2 3
31 31 H 1.09001 * 109.46801 * 60.00058 * 1 2 3
32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
33 33 H 1.08993 * 109.46955 * 120.00226 * 2 1 3
34 34 H 1.09000 * 109.47050 * 240.00054 * 2 1 3
35 35 H 1.09001 * 109.47296 * 210.00668 * 5 4 3
36 36 H 1.09006 * 109.46962 * 330.00045 * 5 4 3
37 37 H 1.08996 * 109.47565 * 300.00028 * 6 5 4
38 38 H 1.09004 * 109.46851 * 60.00188 * 6 5 4
39 39 H 0.97005 * 119.99860 * 179.97438 * 10 9 7
40 40 H 1.08990 * 109.89083 * 242.66719 * 19 18 17
41 41 H 1.08999 * 109.88478 * 3.85675 * 19 18 17
42 42 H 1.08995 * 110.70649 * 140.66610 * 20 19 18
43 43 H 1.08999 * 110.70969 * 263.72962 * 20 19 18
44 44 H 1.08995 * 110.99113 * 82.43355 * 21 20 19
45 45 H 1.08998 * 110.98886 * 206.25483 * 21 20 19
46 46 H 1.08000 * 126.35077 * 179.73577 * 27 26 25
47 47 H 1.08998 * 109.47420 * 89.99371 * 29 28 24
48 48 H 1.09000 * 109.46947 * 209.99469 * 29 28 24
49 49 H 1.08997 * 109.46648 * 329.99128 * 29 28 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2990 2.1575 -1.0901
5 6 2.1644 1.7508 -2.5349
6 6 0.7587 2.0932 -3.0322
7 6 0.6242 1.6869 -4.4773
8 1 1.4583 1.2306 -4.9897
9 6 -0.5634 1.8979 -5.1450
10 7 -1.5788 2.4540 -4.5211
11 14 -0.7302 1.3937 -6.9360
12 1 -1.2230 -0.0051 -7.0125
13 1 -1.6937 2.2958 -7.6165
14 1 0.5933 1.4895 -7.6026
15 7 2.7019 3.3152 -0.6481
16 7 2.7037 3.3199 0.6372
17 6 2.2929 2.1579 1.0877
18 7 2.1631 1.7891 2.4173
19 6 3.0153 0.6269 2.7289
20 6 3.9432 1.0389 3.8911
21 6 3.1775 2.2173 4.5486
22 6 2.5382 2.9023 3.3150
23 1 3.2610 3.5562 2.8270
24 6 1.3151 3.6822 3.7231
25 7 0.1726 3.1830 4.1093
26 7 -0.6454 4.1362 4.3844
27 6 -0.0652 5.2869 4.1772
28 7 1.1957 5.0315 3.7517
29 6 2.2213 6.0148 3.3946
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 0.8899
34 1 1.8934 -0.5138 -0.8900
35 1 2.9019 2.2858 -3.1332
36 1 2.3312 0.6775 -2.6272
37 1 0.0212 1.5582 -2.4340
38 1 0.5920 3.1664 -2.9399
39 1 -2.4143 2.6028 -4.9910
40 1 2.3955 -0.2172 3.0306
41 1 3.6108 0.3593 1.8561
42 1 4.0653 0.2172 4.5966
43 1 4.9113 1.3678 3.5134
44 1 2.4118 1.8519 5.2329
45 1 3.8642 2.8931 5.0583
46 1 -0.5078 6.2618 4.3188
47 1 2.1452 6.2499 2.3330
48 1 2.0735 6.9226 3.9794
49 1 3.2083 5.6032 3.6057
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001520981177.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:37:00
Heat of formation + Delta-G solvation = 147.265091 kcal
Electronic energy + Delta-G solvation = -31450.738746 eV
Core-core repulsion = 27450.174840 eV
Total energy + Delta-G solvation = -4000.563906 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.197 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-44.20566 -43.95734 -40.24889 -36.92486 -36.02557 -35.90488 -34.13065 -32.85362
-32.63546 -31.47930 -29.79719 -29.36398 -28.41551 -27.16549 -25.27596 -24.30332
-23.82492 -23.36392 -22.65564 -22.37294 -21.20716 -20.73752 -18.74028 -18.31221
-18.25108 -17.65627 -17.23344 -17.12777 -16.62392 -16.37287 -15.96950 -15.71509
-15.24745 -15.01050 -14.79206 -14.76149 -14.38525 -14.26670 -14.17847 -13.98796
-13.64156 -13.51821 -13.30643 -13.13507 -12.88372 -12.82145 -12.67092 -12.55513
-12.47853 -12.41376 -12.27212 -11.88860 -11.85254 -11.76567 -11.51382 -11.35282
-11.30843 -11.15100 -11.10125 -10.69722 -10.57491 -10.25626 -9.28068 -8.21019
-6.33910 0.72998 0.76227 1.22952 1.41687 1.43496 1.54598 1.60661
1.77067 1.87386 2.40862 2.57417 3.09393 3.13179 3.37460 3.44033
3.61560 3.67133 3.73481 3.86155 3.90060 3.95896 3.98195 4.00587
4.19925 4.22140 4.31472 4.39134 4.45070 4.47335 4.57888 4.65100
4.66469 4.68199 4.74688 4.79747 4.85410 4.89877 4.97756 5.01573
5.06434 5.11969 5.14494 5.24133 5.43744 5.47496 5.53300 5.60712
5.78548 5.93465 6.12212 6.16768 6.82594 7.36388 7.71702 7.74810
8.90951
Molecular weight = 345.20amu
Principal moments of inertia in cm(-1)
A = 0.013665 B = 0.003042 C = 0.002806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.585588 B = 9202.857850 C = 9975.296057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.104 3.896
3 N -0.474 5.474
4 C 0.196 3.804
5 C -0.014 4.014
6 C 0.042 3.958
7 C -0.537 4.537
8 H 0.074 0.926
9 C 0.000 4.000
10 N -0.936 5.936
11 Si 0.968 3.032
12 H -0.269 1.269
13 H -0.288 1.288
14 H -0.258 1.258
15 N -0.328 5.328
16 N -0.355 5.355
17 C 0.350 3.650
18 N -0.438 5.438
19 C 0.036 3.964
20 C -0.123 4.123
21 C -0.108 4.108
22 C 0.170 3.830
23 H 0.099 0.901
24 C 0.184 3.816
25 N -0.313 5.313
26 N -0.352 5.352
27 C 0.156 3.844
28 N -0.471 5.471
29 C 0.068 3.932
30 H 0.045 0.955
31 H 0.034 0.966
32 H 0.107 0.893
33 H 0.124 0.876
34 H 0.113 0.887
35 H 0.089 0.911
36 H 0.096 0.904
37 H -0.003 1.003
38 H -0.024 1.024
39 H 0.262 0.738
40 H 0.110 0.890
41 H 0.065 0.935
42 H 0.116 0.884
43 H 0.085 0.915
44 H 0.082 0.918
45 H 0.112 0.888
46 H 0.258 0.742
47 H 0.072 0.928
48 H 0.129 0.871
49 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.620 -1.970 21.455 26.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.016 4.016
3 N -0.168 5.168
4 C -0.073 4.073
5 C -0.053 4.053
6 C 0.003 3.997
7 C -0.575 4.575
8 H 0.092 0.908
9 C -0.198 4.198
10 N -0.576 5.576
11 Si 0.793 3.207
12 H -0.194 1.194
13 H -0.214 1.214
14 H -0.182 1.182
15 N -0.166 5.166
16 N -0.200 5.200
17 C -0.008 4.008
18 N -0.162 5.162
19 C -0.089 4.089
20 C -0.162 4.162
21 C -0.147 4.147
22 C 0.060 3.940
23 H 0.117 0.883
24 C -0.085 4.085
25 N -0.153 5.153
26 N -0.191 5.191
27 C -0.132 4.132
28 N -0.161 5.161
29 C -0.074 4.074
30 H 0.064 0.936
31 H 0.054 0.946
32 H 0.125 0.875
33 H 0.142 0.858
34 H 0.131 0.869
35 H 0.107 0.893
36 H 0.115 0.885
37 H 0.015 0.985
38 H -0.006 1.006
39 H 0.071 0.929
40 H 0.128 0.872
41 H 0.084 0.916
42 H 0.135 0.865
43 H 0.104 0.896
44 H 0.100 0.900
45 H 0.130 0.870
46 H 0.274 0.726
47 H 0.091 0.909
48 H 0.147 0.853
49 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 13.390 -1.644 21.889 25.712
hybrid contribution -0.060 0.281 -1.687 1.711
sum 13.330 -1.363 20.202 24.242
Atomic orbital electron populations
1.22103 0.94610 1.04249 1.01180 1.22197 0.95476 0.77391 1.06583
1.46385 1.50551 1.15118 1.04777 1.25253 1.01025 0.88266 0.92767
1.20118 0.99884 1.02144 0.83194 1.18886 0.90808 0.94358 0.95620
1.21592 0.98809 1.40305 0.96789 0.90775 1.26015 0.95489 0.94933
1.03328 1.70147 1.03928 1.44583 1.38955 0.85396 0.78444 0.78162
0.78745 1.19435 1.21432 1.18188 1.73840 1.21249 1.18384 1.03114
1.74217 1.23749 1.18509 1.03488 1.22827 1.00186 0.89448 0.88295
1.59923 1.53119 1.08032 0.95137 1.23244 0.94363 0.91546 0.99745
1.22789 0.97765 0.99074 0.96531 1.22806 0.99771 0.97762 0.94353
1.20861 0.88726 0.90473 0.93902 0.88313 1.24590 0.98430 0.82071
1.03436 1.74116 0.99242 1.24565 1.17337 1.74160 1.26186 0.97173
1.21581 1.27185 0.82700 1.02432 1.00868 1.46381 1.13757 1.07432
1.48513 1.22431 0.90066 0.91883 1.02992 0.93600 0.94646 0.87472
0.85772 0.86916 0.89272 0.88533 0.98452 1.00558 0.92913 0.87169
0.91643 0.86544 0.89624 0.89976 0.86966 0.72592 0.90906 0.85252
0.87735
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.98 10.24 71.98 0.74 -4.25 16
2 C 0.10 2.70 6.53 86.38 0.56 3.26 16
3 N -0.47 -16.09 2.76 -514.85 -1.42 -17.51 16
4 C 0.20 7.96 7.32 137.64 1.01 8.96 16
5 C -0.01 -0.57 5.53 29.85 0.16 -0.40 16
6 C 0.04 2.22 4.95 29.85 0.15 2.37 16
7 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16
8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16
9 C 0.00 0.01 5.46 84.65 0.46 0.47 16
10 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16
11 Si 0.97 43.73 29.54 68.60 2.03 45.75 16
12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16
14 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16
15 N -0.33 -14.35 12.18 -49.54 -0.60 -14.95 16
16 N -0.35 -13.72 10.72 -58.00 -0.62 -14.34 16
17 C 0.35 11.75 6.86 260.11 1.78 13.53 16
18 N -0.44 -11.55 4.86 -676.42 -3.29 -14.83 16
19 C 0.04 0.61 5.22 86.65 0.45 1.07 16
20 C -0.12 -1.30 6.94 31.78 0.22 -1.08 16
21 C -0.11 -1.52 6.48 31.98 0.21 -1.31 16
22 C 0.17 3.91 2.51 44.64 0.11 4.03 16
23 H 0.10 2.32 6.00 -2.39 -0.01 2.31 16
24 C 0.18 5.16 6.93 137.97 0.96 6.12 16
25 N -0.31 -10.82 12.21 -50.16 -0.61 -11.43 16
26 N -0.35 -11.74 12.21 -59.98 -0.73 -12.47 16
27 C 0.16 3.73 12.74 180.11 2.30 6.02 16
28 N -0.47 -10.77 3.15 -542.08 -1.71 -12.48 16
29 C 0.07 0.93 10.86 127.77 1.39 2.32 16
30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
31 H 0.03 1.39 6.27 -2.39 -0.01 1.38 16
32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16
33 H 0.12 2.30 5.95 -2.39 -0.01 2.28 16
34 H 0.11 2.57 7.24 -2.39 -0.02 2.55 16
35 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16
36 H 0.10 3.40 7.26 -2.38 -0.02 3.38 16
37 H 0.00 -0.16 6.27 -2.39 -0.01 -0.17 16
38 H -0.02 -1.49 8.14 -2.38 -0.02 -1.51 16
39 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16
40 H 0.11 1.54 7.95 -2.39 -0.02 1.52 16
41 H 0.07 1.12 7.07 -2.39 -0.02 1.10 16
42 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16
43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
44 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16
45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.26 3.34 8.06 -2.91 -0.02 3.32 16
47 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
48 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16
49 H 0.10 1.11 7.43 -2.39 -0.02 1.09 16
Total: -1.00 -88.00 396.80 5.02 -82.97
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: 0.96 Total: 15.47 kcal
Atomic # 6 Polarization: 0.84 SS G_CDS: 10.73 Total: 11.57 kcal
Atomic # 7 Polarization: -147.07 SS G_CDS: -8.70 Total: -155.77 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal
Total: -88.00 5.02 -82.97 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001520981177.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 230.235 kcal
(2) G-P(sol) polarization free energy of solvation -87.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) 147.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds