Wall clock time and date at job start Wed Apr 1 2020 03:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47041 * 239.99758 * 3 2 1 5 5 H 1.48505 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46772 * 119.99852 * 3 2 1 7 7 C 1.38807 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00034 * 163.08398 * 7 2 1 9 9 N 1.36943 * 119.99931 * 343.08134 * 7 2 1 10 10 C 1.46925 * 120.62798 * 331.84572 * 9 7 2 11 11 C 1.53200 * 108.77553 * 233.58609 * 10 9 7 12 12 C 1.53033 * 109.31017 * 305.37034 * 11 10 9 13 13 C 1.53001 * 109.46234 * 181.38748 * 12 11 10 14 14 C 1.52994 * 109.47856 * 174.97125 * 13 12 11 15 15 N 1.46500 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99825 * 179.97438 * 15 14 13 17 17 O 1.21695 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.46675 * 119.99941 * 180.02562 * 16 15 14 19 19 C 1.38049 * 126.20395 * 180.02562 * 18 16 15 20 20 C 1.39257 * 106.97659 * 179.97438 * 19 18 16 21 21 C 1.35963 * 108.03627 * 0.04706 * 20 19 18 22 22 N 1.35115 * 108.76566 * 359.91669 * 21 20 19 23 23 H 0.97003 * 125.67863 * 180.02562 * 22 21 20 24 24 C 1.51021 * 123.85286 * 179.81814 * 21 20 19 25 25 C 1.53330 * 108.40591 * 343.35158 * 24 21 20 26 26 C 1.53108 * 109.52677 * 50.17429 * 25 24 21 27 27 C 1.50837 * 127.70477 * 180.31138 * 20 19 18 28 28 C 1.53040 * 109.53294 * 61.36721 * 12 11 10 29 29 C 1.46918 * 120.63087 * 151.82308 * 9 7 2 30 30 H 0.96998 * 119.99909 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.58835 * 113.80126 * 10 9 7 32 32 H 1.08996 * 109.70740 * 353.44096 * 10 9 7 33 33 H 1.08998 * 109.49651 * 185.41437 * 11 10 9 34 34 H 1.09005 * 109.52260 * 65.33370 * 11 10 9 35 35 H 1.09003 * 109.45790 * 301.35418 * 12 11 10 36 36 H 1.08998 * 109.47115 * 54.96036 * 13 12 11 37 37 H 1.09004 * 109.46854 * 294.97017 * 13 12 11 38 38 H 1.09001 * 109.47289 * 59.98879 * 14 13 12 39 39 H 1.09004 * 109.46800 * 299.99924 * 14 13 12 40 40 H 0.96994 * 120.00285 * 359.97438 * 15 14 13 41 41 H 1.08002 * 126.51294 * 359.97438 * 19 18 16 42 42 H 1.09000 * 109.67648 * 103.07411 * 24 21 20 43 43 H 1.08997 * 109.68080 * 223.61925 * 24 21 20 44 44 H 1.08998 * 109.45677 * 170.18998 * 25 24 21 45 45 H 1.09000 * 109.45812 * 290.15914 * 25 24 21 46 46 H 1.09003 * 109.47297 * 49.58400 * 26 25 24 47 47 H 1.08996 * 109.47362 * 169.58944 * 26 25 24 48 48 H 1.08991 * 109.68459 * 283.01108 * 27 20 19 49 49 H 1.09001 * 109.67874 * 43.56232 * 27 20 19 50 50 H 1.09001 * 109.49353 * 58.58047 * 28 12 11 51 51 H 1.09002 * 109.49823 * 178.67308 * 28 12 11 52 52 H 1.09001 * 109.59016 * 246.19984 * 29 9 7 53 53 H 1.09003 * 109.58669 * 6.48614 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2716 9 7 1.3700 -2.3622 0.3462 10 6 0.2260 -2.3398 1.2677 11 6 0.4972 -3.3190 2.4144 12 6 0.8118 -4.7006 1.8363 13 6 1.0493 -5.6894 2.9794 14 6 1.2398 -7.0952 2.4066 15 7 1.4678 -8.0419 3.5012 16 6 1.6621 -9.3483 3.2327 17 8 1.6477 -9.7416 2.0812 18 6 1.8898 -10.2962 4.3286 19 6 2.1025 -11.6542 4.2012 20 6 2.2718 -12.1617 5.4869 21 6 2.1617 -11.1294 6.3648 22 7 1.9310 -9.9925 5.6722 23 1 1.8130 -9.1098 6.0567 24 6 2.2830 -11.2821 7.8624 25 6 2.1224 -12.7662 8.2123 26 6 3.0524 -13.6036 7.3302 27 6 2.5382 -13.5916 5.8866 28 6 2.0674 -4.6170 0.9653 29 6 1.8138 -3.6528 -0.1978 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6771 -2.6404 0.7366 32 1 0.0965 -1.3346 1.6687 33 1 -0.3835 -3.3838 3.0534 34 1 1.3466 -2.9676 3.0002 35 1 -0.0283 -5.0407 1.2307 36 1 0.1896 -5.6834 3.6495 37 1 1.9426 -5.3982 3.5321 38 1 2.0995 -7.1011 1.7365 39 1 0.3465 -7.3865 1.8540 40 1 1.4790 -7.7285 4.4190 41 1 2.1320 -12.2163 3.2794 42 1 3.2623 -10.9320 8.1888 43 1 1.5025 -10.7022 8.3549 44 1 2.3783 -12.9219 9.2603 45 1 1.0895 -13.0697 8.0418 46 1 4.0573 -13.1823 7.3591 47 1 3.0775 -14.6289 7.6993 48 1 1.6151 -14.1678 5.8258 49 1 3.2864 -14.0249 5.2228 50 1 2.9021 -4.2530 1.5644 51 1 2.3045 -5.6059 0.5729 52 1 1.0403 -4.0605 -0.8486 53 1 2.7333 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568130475.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:55 Heat of formation + Delta-G solvation = -25.555451 kcal Electronic energy + Delta-G solvation = -29423.664776 eV Core-core repulsion = 25486.854401 eV Total energy + Delta-G solvation = -3936.810374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.60715 -40.47455 -39.48199 -37.16662 -36.77617 -35.13941 -33.19493 -33.03673 -31.65453 -30.70100 -29.94925 -29.34505 -26.99145 -25.29729 -24.33077 -23.64344 -23.15881 -22.24753 -22.21367 -21.11012 -20.61686 -19.45446 -19.31039 -18.70648 -17.06782 -16.84427 -16.80855 -16.70319 -15.97456 -15.73936 -15.40447 -15.30370 -15.09972 -14.93072 -14.76236 -14.67576 -14.45279 -14.36558 -14.02482 -13.92859 -13.86486 -13.49233 -13.25889 -13.05282 -12.94035 -12.85500 -12.65600 -12.54047 -12.32095 -12.17766 -11.95809 -11.82152 -11.65095 -11.58850 -11.54936 -11.34585 -11.32363 -11.01065 -10.99706 -10.53059 -10.25136 -9.79996 -8.91910 -8.67052 -7.87605 -5.33360 0.38897 1.45746 1.47593 1.54890 1.66083 1.96477 2.13459 2.31132 2.50733 3.26269 3.70554 3.74604 3.80265 3.84602 3.90826 3.98840 4.09260 4.10781 4.19259 4.27268 4.39513 4.40106 4.54264 4.57532 4.63008 4.69203 4.71350 4.73726 4.74666 4.75879 4.88062 4.98766 4.99551 5.02136 5.08693 5.10384 5.13612 5.22516 5.25255 5.29669 5.34317 5.36192 5.38533 5.38978 5.45124 5.54255 5.55421 5.66255 5.80182 5.83998 5.91915 6.39034 6.39161 6.56341 7.08176 7.15224 7.87202 8.38861 9.18236 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.001576 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.260367 B =17757.849396 C =18171.192028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.174 3.826 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.107 4.107 14 C 0.123 3.877 15 N -0.715 5.715 16 C 0.585 3.415 17 O -0.578 6.578 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.193 4.193 21 C 0.064 3.936 22 N -0.518 5.518 23 H 0.429 0.571 24 C -0.054 4.054 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.049 4.049 28 C -0.118 4.118 29 C 0.137 3.863 30 H 0.250 0.750 31 H -0.009 1.009 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.410 0.590 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.008 0.992 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -26.682 22.545 35.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.396 4.396 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.145 4.145 14 C 0.000 4.000 15 N -0.366 5.366 16 C 0.374 3.626 17 O -0.458 6.458 18 C -0.191 4.191 19 C -0.144 4.144 20 C -0.199 4.199 21 C -0.055 4.055 22 N -0.115 5.115 23 H 0.269 0.731 24 C -0.091 4.091 25 C -0.150 4.150 26 C -0.156 4.156 27 C -0.087 4.087 28 C -0.156 4.156 29 C 0.012 3.988 30 H 0.059 0.941 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.246 0.754 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.026 0.974 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.101 -26.598 21.710 34.578 hybrid contribution 0.005 1.851 -0.486 1.914 sum 4.105 -24.747 21.224 32.859 Atomic orbital electron populations 1.70189 1.06676 1.25892 1.55404 1.25811 0.96059 1.01514 1.01254 0.85338 0.77574 0.79173 0.78341 1.20249 1.21906 1.20290 1.19494 0.92784 0.86223 1.41091 0.91861 1.44325 1.36029 1.02205 1.50905 1.20616 0.87509 0.97794 0.89266 1.22012 1.00881 0.95162 0.97819 1.20881 0.97598 0.94368 0.96117 1.21699 1.03503 0.91360 0.97917 1.21402 1.01316 0.88086 0.89215 1.45754 1.72901 1.06703 1.11248 1.17317 0.76010 0.81944 0.87286 1.90826 1.53784 1.78947 1.22293 1.20100 1.20681 0.95162 0.83125 1.21170 1.02742 0.92022 0.98458 1.19592 1.11759 0.97019 0.91531 1.21034 1.03544 0.84976 0.95968 1.41644 1.54781 1.10379 1.04655 0.73122 1.20508 1.03998 0.99105 0.85514 1.21548 1.00337 0.92618 1.00518 1.21584 0.99229 1.01068 0.93674 1.20106 1.01097 0.90308 0.97174 1.21975 0.97708 0.98648 0.97318 1.21073 0.96856 0.86375 0.94505 0.94114 0.99062 0.93014 0.91089 0.92819 0.92252 0.89634 0.90240 0.91972 0.92311 0.75407 0.84777 0.88748 0.88797 0.89119 0.91740 0.91876 0.90188 0.91107 0.91278 0.92448 0.90833 0.97399 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 11.19 21.65 0.24 -55.96 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.27 -14.97 9.58 84.03 0.81 -14.17 16 8 H 0.06 3.49 7.88 -2.91 -0.02 3.46 16 9 N -0.61 -31.41 2.99 -699.11 -2.09 -33.50 16 10 C 0.17 8.43 5.30 86.37 0.46 8.89 16 11 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 12 C -0.07 -2.10 2.15 -10.77 -0.02 -2.13 16 13 C -0.11 -2.23 4.80 30.59 0.15 -2.08 16 14 C 0.12 2.79 5.43 86.38 0.47 3.26 16 15 N -0.71 -13.80 5.55 -467.08 -2.59 -16.39 16 16 C 0.59 14.96 7.79 86.45 0.67 15.64 16 17 O -0.58 -20.09 16.88 -4.33 -0.07 -20.16 16 18 C -0.08 -1.66 7.06 40.36 0.29 -1.37 16 19 C -0.12 -2.60 10.62 22.47 0.24 -2.36 16 20 C -0.19 -3.27 5.91 -20.10 -0.12 -3.39 16 21 C 0.06 0.84 7.02 41.63 0.29 1.13 16 22 N -0.52 -6.83 5.98 -171.31 -1.02 -7.85 16 23 H 0.43 2.77 8.19 -92.71 -0.76 2.01 16 24 C -0.05 -0.32 6.30 30.06 0.19 -0.13 16 25 C -0.11 -0.60 5.89 30.74 0.18 -0.42 16 26 C -0.12 -0.87 5.90 30.72 0.18 -0.69 16 27 C -0.05 -0.59 6.27 29.98 0.19 -0.41 16 28 C -0.12 -3.89 5.15 30.67 0.16 -3.73 16 29 C 0.14 5.89 6.52 86.36 0.56 6.46 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 32 H 0.05 2.84 6.07 -2.39 -0.01 2.83 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.59 6.53 -2.39 -0.02 1.58 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.41 4.87 7.60 -92.71 -0.70 4.16 16 41 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.06 0.42 8.11 -2.39 -0.02 0.40 16 46 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 47 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.07 2.13 6.50 -2.39 -0.02 2.11 16 52 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 53 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 Total: -1.00 -75.63 410.91 1.20 -74.43 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.56 Total: 14.12 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.27 Total: -2.06 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.47 Total: -113.71 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.07 Total: -20.16 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.63 1.20 -74.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568130475.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.874 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds