Wall clock time and date at job start Wed Apr 1 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48508 * 109.46865 * 271.85181 * 3 2 1 5 5 H 1.48502 * 109.47252 * 31.84630 * 3 2 1 6 6 H 1.48499 * 109.47521 * 151.85065 * 3 2 1 7 7 C 1.38947 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 25.94935 * 7 2 1 9 9 N 1.37100 * 120.00212 * 205.94285 * 7 2 1 10 10 C 1.34774 * 119.99902 * 52.22582 * 9 7 2 11 11 O 1.21291 * 119.99828 * 175.34025 * 10 9 7 12 12 C 1.50701 * 119.99915 * 355.34504 * 10 9 7 13 13 N 1.46901 * 109.47129 * 184.01410 * 12 10 9 14 14 C 1.46897 * 111.00326 * 199.48003 * 13 12 10 15 15 C 1.52998 * 109.46908 * 75.69086 * 14 13 12 16 16 N 1.46900 * 109.47267 * 184.25260 * 15 14 13 17 17 C 1.46902 * 110.99620 * 75.52639 * 13 12 10 18 18 C 1.50709 * 109.47006 * 196.31963 * 17 13 12 19 19 C 1.38233 * 119.99708 * 269.72914 * 18 17 13 20 20 C 1.38241 * 119.99736 * 179.76774 * 19 18 17 21 21 C 1.38236 * 119.99458 * 0.50383 * 20 19 18 22 22 C 1.38232 * 120.00416 * 359.75177 * 21 20 19 23 23 C 1.38233 * 119.99733 * 90.00513 * 18 17 13 24 24 C 1.46502 * 120.00105 * 232.23129 * 9 7 2 25 25 C 1.54271 * 110.03128 * 302.08882 * 24 9 7 26 26 C 1.54964 * 104.15863 * 95.75485 * 25 24 9 27 27 C 1.54888 * 102.77677 * 37.89236 * 26 25 24 28 28 C 1.53870 * 110.03511 * 59.30798 * 24 9 7 29 29 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46936 * 304.01776 * 12 10 9 31 31 H 1.09004 * 109.47291 * 64.01695 * 12 10 9 32 32 H 1.08997 * 109.47276 * 195.68774 * 14 13 12 33 33 H 1.08998 * 109.47292 * 315.69536 * 14 13 12 34 34 H 1.09002 * 109.47285 * 304.24745 * 15 14 13 35 35 H 1.08998 * 109.47484 * 64.24581 * 15 14 13 36 36 H 1.00897 * 111.00406 * 56.03984 * 16 15 14 37 37 H 1.00897 * 111.00188 * 180.02562 * 16 15 14 38 38 H 1.08995 * 109.47530 * 316.32292 * 17 13 12 39 39 H 1.08998 * 109.47105 * 76.32408 * 17 13 12 40 40 H 1.07995 * 120.00459 * 359.97438 * 19 18 17 41 41 H 1.07997 * 120.00201 * 180.23418 * 20 19 18 42 42 H 1.08002 * 119.99753 * 179.72522 * 21 20 19 43 43 H 1.08001 * 119.99920 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00265 * 359.97438 * 23 18 17 45 45 H 1.08998 * 110.01600 * 180.69919 * 24 9 7 46 46 H 1.08996 * 110.48746 * 214.40430 * 25 24 9 47 47 H 1.09001 * 110.48597 * 337.04830 * 25 24 9 48 48 H 1.09002 * 110.72155 * 279.57282 * 26 25 24 49 49 H 1.09007 * 110.91786 * 156.29533 * 26 25 24 50 50 H 1.09003 * 110.48232 * 203.40519 * 27 26 25 51 51 H 1.08991 * 110.60511 * 80.81399 * 27 26 25 52 52 H 1.09005 * 110.03271 * 359.94888 * 28 24 9 53 53 H 1.08999 * 110.03592 * 121.38627 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4564 2.0690 -1.3994 5 1 1.4657 2.6411 0.7387 6 1 3.5647 1.4292 0.6605 7 6 2.0088 -1.2033 0.0005 8 1 1.5505 -2.0917 -0.4083 9 7 3.2762 -1.2630 0.5200 10 6 3.5184 -0.7967 1.7611 11 8 4.6195 -0.9258 2.2532 12 6 2.4212 -0.1151 2.5374 13 7 2.9589 0.3830 3.8105 14 6 1.8804 0.6293 4.7771 15 6 1.3823 -0.7049 5.3362 16 7 0.2372 -0.4665 6.2249 17 6 3.7667 1.5924 3.6036 18 6 4.6152 1.8444 4.8233 19 6 4.1306 2.6304 5.8520 20 6 4.9071 2.8577 6.9729 21 6 6.1722 2.3074 7.0605 22 6 6.6588 1.5257 6.0294 23 6 5.8804 1.2942 4.9108 24 6 4.3672 -1.8334 -0.2741 25 6 4.0273 -3.2842 -0.6738 26 6 3.4248 -3.1543 -2.0957 27 6 4.2919 -2.0413 -2.7348 28 6 4.5351 -1.0433 -1.5837 29 1 -0.4850 0.8401 0.0004 30 1 2.0302 0.7202 1.9564 31 1 1.6198 -0.8269 2.7351 32 1 2.2572 1.2468 5.5923 33 1 1.0583 1.1448 4.2807 34 1 1.0756 -1.3516 4.5141 35 1 2.1837 -1.1858 5.8971 36 1 -0.4944 0.0363 5.7453 37 1 -0.1101 -1.3330 6.6077 38 1 4.4107 1.4550 2.7350 39 1 3.1084 2.4449 3.4366 40 1 3.1441 3.0642 5.7815 41 1 4.5270 3.4686 7.7783 42 1 6.7805 2.4886 7.9342 43 1 7.6474 1.0962 6.0977 44 1 6.2605 0.6835 4.1053 45 1 5.2954 -1.8112 0.2969 46 1 4.9297 -3.8951 -0.6964 47 1 3.2957 -3.7080 0.0141 48 1 2.3797 -2.8488 -2.0452 49 1 3.5265 -4.0884 -2.6482 50 1 3.7531 -1.5590 -3.5504 51 1 5.2374 -2.4492 -3.0920 52 1 3.8042 -0.2359 -1.6290 53 1 5.5447 -0.6377 -1.6484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052466.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:31 Heat of formation + Delta-G solvation = -6.300956 kcal Electronic energy + Delta-G solvation = -32365.663298 eV Core-core repulsion = 28429.687861 eV Total energy + Delta-G solvation = -3935.975437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.33408 -40.31884 -38.90977 -37.81497 -35.92873 -35.29899 -33.70844 -32.65233 -31.78706 -29.96496 -29.53771 -28.76408 -27.96258 -26.35348 -24.95663 -23.54219 -22.53719 -22.11701 -21.44862 -21.15942 -20.96226 -19.04950 -17.96206 -17.66432 -17.55393 -16.99094 -16.65491 -16.41637 -16.11494 -16.03376 -15.87921 -15.70342 -15.43710 -15.21166 -15.00179 -14.85541 -14.40634 -14.28109 -14.24498 -14.03979 -13.78304 -13.42885 -13.24602 -13.06451 -12.87095 -12.69020 -12.56774 -12.42859 -12.27636 -12.18753 -11.98376 -11.88009 -11.84898 -11.81131 -11.78240 -11.61131 -11.32421 -10.96883 -10.47740 -9.79359 -9.69759 -9.67054 -9.37442 -9.33220 -8.57103 -6.22474 0.42808 0.53446 1.05423 1.17357 1.25566 1.88696 2.06090 2.37687 2.80217 2.86037 3.16099 3.64104 3.79004 3.82493 3.86767 3.89729 3.99260 4.05977 4.15842 4.18153 4.21029 4.22279 4.27230 4.36146 4.47178 4.50013 4.58422 4.60768 4.69771 4.70965 4.74062 4.77154 4.81687 4.85848 4.90691 4.98976 5.00463 5.11140 5.12759 5.19063 5.21246 5.34898 5.44165 5.56551 5.62855 5.63495 5.66781 5.75757 5.82585 5.98304 6.01621 6.14397 6.15229 6.48554 6.54890 6.97172 7.42119 7.86958 8.55004 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004048 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.672155 B = 6915.199025 C = 7752.291126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.060 3.940 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.329 4.329 8 H 0.084 0.916 9 N -0.474 5.474 10 C 0.492 3.508 11 O -0.590 6.590 12 C 0.065 3.935 13 N -0.519 5.519 14 C 0.056 3.944 15 C 0.076 3.924 16 N -0.844 5.844 17 C 0.100 3.900 18 C -0.083 4.083 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.111 4.111 24 C 0.121 3.879 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.107 4.107 28 C -0.130 4.130 29 H 0.278 0.722 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.345 0.655 37 H 0.354 0.646 38 H 0.056 0.944 39 H 0.035 0.965 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.045 0.955 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 2.259 7.736 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.146 4.146 3 Si 0.710 3.290 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.102 0.898 9 N -0.197 5.197 10 C 0.282 3.718 11 O -0.474 6.474 12 C -0.066 4.066 13 N -0.243 5.243 14 C -0.072 4.072 15 C -0.055 4.055 16 N -0.375 5.375 17 C -0.028 4.028 18 C -0.083 4.083 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.130 4.130 24 C 0.017 3.983 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.169 4.169 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.156 0.844 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.064 0.936 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.005 2.323 8.580 11.318 hybrid contribution -1.212 0.935 -1.681 2.273 sum 5.793 3.257 6.899 9.580 Atomic orbital electron populations 1.69832 1.06847 1.28623 1.46000 1.25796 0.95070 0.99134 0.94596 0.86842 0.80680 0.83130 0.78333 1.20584 1.20716 1.19491 1.18639 0.88397 0.95787 1.42789 0.89834 1.43885 1.08412 1.56120 1.11261 1.20645 0.88852 0.80545 0.81807 1.90491 1.25851 1.61409 1.69617 1.21855 0.96021 0.98850 0.89828 1.61509 1.22702 1.30844 1.09263 1.22178 0.91802 0.98001 0.95201 1.21526 0.94111 0.95500 0.94385 1.58645 1.11521 1.27900 1.39477 1.20971 0.95088 0.90233 0.96475 1.19641 0.94800 0.98265 0.95631 1.21196 1.00225 0.98780 0.93887 1.21415 0.94546 1.00109 0.97730 1.21486 0.96250 0.97008 0.99058 1.21381 1.00395 0.99122 0.93504 1.21096 0.94383 0.98671 0.98852 1.21846 0.90346 0.94129 0.91939 1.22520 1.00573 0.94880 0.97440 1.22452 0.99190 0.98727 0.94774 1.22228 1.00260 0.95664 0.96344 1.22457 1.00501 0.98917 0.94976 0.91205 0.94345 0.88590 0.88573 0.95276 0.96679 0.91060 0.84299 0.83275 0.92504 0.94713 0.85593 0.83307 0.83129 0.84422 0.87983 0.91177 0.89776 0.93250 0.92861 0.89976 0.91821 0.89639 0.93595 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.05 13.96 21.66 0.30 -45.75 16 2 C 0.06 3.03 4.08 84.93 0.35 3.37 16 3 Si 0.88 41.71 23.06 68.60 1.58 43.29 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -13.21 5.40 99.48 0.54 -12.67 16 7 C -0.33 -16.37 7.28 84.04 0.61 -15.76 16 8 H 0.08 4.45 6.55 -2.91 -0.02 4.43 16 9 N -0.47 -22.30 1.80 -609.38 -1.10 -23.40 16 10 C 0.49 23.97 5.36 87.66 0.47 24.44 16 11 O -0.59 -30.34 14.86 -3.06 -0.05 -30.38 16 12 C 0.06 2.91 3.39 85.56 0.29 3.20 16 13 N -0.52 -20.67 3.92 -905.36 -3.55 -24.22 16 14 C 0.06 1.87 5.06 86.30 0.44 2.31 16 15 C 0.08 2.37 6.94 86.30 0.60 2.96 16 16 N -0.84 -20.76 9.62 -186.72 -1.80 -22.55 16 17 C 0.10 3.88 4.71 85.56 0.40 4.28 16 18 C -0.08 -2.78 5.10 -19.86 -0.10 -2.88 16 19 C -0.12 -3.36 8.14 22.27 0.18 -3.18 16 20 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 21 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 22 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 23 C -0.11 -3.70 9.70 22.27 0.22 -3.48 16 24 C 0.12 4.94 3.35 45.72 0.15 5.10 16 25 C -0.12 -4.05 6.00 31.70 0.19 -3.86 16 26 C -0.11 -3.62 6.53 31.91 0.21 -3.41 16 27 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 28 C -0.13 -4.83 6.28 31.32 0.20 -4.63 16 29 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.04 1.83 2.72 -2.39 -0.01 1.82 16 31 H 0.10 4.45 6.44 -2.38 -0.02 4.43 16 32 H 0.10 2.99 5.27 -2.39 -0.01 2.97 16 33 H 0.03 0.98 8.00 -2.39 -0.02 0.96 16 34 H 0.02 0.52 6.67 -2.39 -0.02 0.50 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.34 7.90 8.99 -89.70 -0.81 7.10 16 37 H 0.35 7.29 9.08 -89.70 -0.81 6.47 16 38 H 0.06 2.54 6.18 -2.39 -0.01 2.53 16 39 H 0.03 1.30 7.99 -2.39 -0.02 1.28 16 40 H 0.13 3.13 7.47 -2.91 -0.02 3.10 16 41 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 43 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.10 3.85 8.06 -2.91 -0.02 3.82 16 45 H 0.07 3.01 6.95 -2.39 -0.02 2.99 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.05 1.91 7.97 -2.39 -0.02 1.89 16 48 H 0.05 1.99 6.49 -2.39 -0.02 1.98 16 49 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 51 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.05 1.96 5.53 -2.38 -0.01 1.94 16 53 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -60.75 397.41 -0.37 -61.12 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.86 Total: 44.30 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.09 Total: -2.41 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -6.14 Total: -115.91 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.58 Total: 43.29 kcal Total: -60.75 -0.37 -61.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052466.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.823 kcal (2) G-P(sol) polarization free energy of solvation -60.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds