Wall clock time and date at job start Wed Apr 1 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46930 * 2 1 4 4 C 1.37681 * 127.18356 * 276.59551 * 3 2 1 5 5 C 1.47281 * 126.50000 * 359.97438 * 4 3 2 6 6 N 1.37817 * 126.78838 * 357.33304 * 5 4 3 7 7 H 0.96999 * 126.46912 * 0.03126 * 6 5 4 8 8 C 1.35113 * 107.06233 * 180.02562 * 6 5 4 9 9 N 1.30607 * 109.03941 * 359.97438 * 8 6 5 10 10 C 1.33725 * 109.60795 * 359.73482 * 9 8 6 11 11 C 1.50702 * 126.06575 * 180.31401 * 10 9 8 12 12 N 1.31456 * 107.00014 * 180.02562 * 4 3 2 13 13 N 1.28507 * 109.93097 * 359.72904 * 12 4 3 14 14 C 1.31299 * 110.14617 * 0.45076 * 13 12 4 15 15 N 1.38490 * 126.35915 * 179.81906 * 14 13 12 16 16 C 1.46955 * 110.99845 * 295.71762 * 15 14 13 17 17 C 1.53052 * 109.36188 * 183.18674 * 16 15 14 18 18 N 1.46956 * 109.36247 * 301.59318 * 17 16 15 19 19 C 1.46902 * 110.99732 * 183.18645 * 18 17 16 20 20 C 1.50698 * 109.46845 * 170.00121 * 19 18 17 21 21 H 1.08004 * 120.00217 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99754 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47211 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47231 * 119.99980 * 24 22 20 27 27 H 1.48504 * 109.47187 * 239.99759 * 24 22 20 28 28 C 1.46955 * 110.87821 * 59.32651 * 18 17 16 29 29 C 1.46956 * 110.99647 * 59.51069 * 15 14 13 30 30 H 1.09000 * 109.47325 * 305.13339 * 1 2 3 31 31 H 1.08995 * 109.47039 * 65.14329 * 1 2 3 32 32 H 1.09002 * 109.46842 * 185.14386 * 1 2 3 33 33 H 1.08996 * 109.47530 * 240.00205 * 2 1 3 34 34 H 1.09001 * 109.47506 * 119.99782 * 2 1 3 35 35 H 1.08003 * 125.48307 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46328 * 270.14441 * 11 10 9 37 37 H 1.08996 * 109.47446 * 30.13680 * 11 10 9 38 38 H 1.08999 * 109.46992 * 150.14694 * 11 10 9 39 39 H 1.08998 * 109.48842 * 63.21594 * 16 15 14 40 40 H 1.09006 * 109.48647 * 303.14929 * 16 15 14 41 41 H 1.09002 * 109.48480 * 181.63004 * 17 16 15 42 42 H 1.08995 * 109.48994 * 61.56521 * 17 16 15 43 43 H 1.08996 * 109.47417 * 290.00754 * 19 18 17 44 44 H 1.09003 * 109.46856 * 50.00613 * 19 18 17 45 45 H 0.96997 * 120.00025 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.49381 * 60.64120 * 28 18 17 47 47 H 1.09006 * 109.48647 * 180.71130 * 28 18 17 48 48 H 1.08995 * 109.49338 * 296.78169 * 29 15 14 49 49 H 1.09003 * 109.48944 * 56.82488 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1768 2.2077 -1.0896 5 6 1.8863 1.8716 -2.4938 6 7 1.4528 0.6566 -2.9789 7 1 1.2796 -0.1434 -2.4585 8 6 1.3144 0.7903 -4.3163 9 7 1.6376 2.0086 -4.6584 10 6 1.9873 2.7026 -3.5701 11 6 2.4195 4.1459 -3.5392 12 7 2.6377 3.3535 -0.6392 13 7 2.7699 3.3007 0.6380 14 6 2.4119 2.1178 1.0812 15 7 2.4251 1.6968 2.4005 16 6 3.7957 1.6658 2.9297 17 6 3.7753 1.1213 4.3599 18 7 2.9116 1.9704 5.1922 19 6 2.9256 1.5238 6.5917 20 6 2.2354 2.5497 7.4532 21 1 1.8268 3.4437 7.0058 22 6 2.1255 2.3468 8.8125 23 7 2.6235 1.2584 9.3574 24 14 1.2693 3.6181 9.8803 25 1 0.8002 4.7426 9.0314 26 1 0.1061 2.9921 10.5589 27 1 2.2204 4.1299 10.8996 28 6 1.5410 2.0013 4.6631 29 6 1.5614 2.5459 3.2329 30 1 -0.3634 0.5914 0.8404 31 1 -0.3633 0.4320 -0.9324 32 1 -0.3633 -1.0236 0.0921 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.9880 0.0148 -4.9934 36 1 3.5009 4.2040 -3.6635 37 1 1.9312 4.6889 -4.3483 38 1 2.1393 4.5887 -2.5834 39 1 4.2081 2.6748 2.9305 40 1 4.4126 1.0209 2.3038 41 1 4.7874 1.1246 4.7647 42 1 3.3883 0.1024 4.3556 43 1 2.4044 0.5701 6.6740 44 1 3.9566 1.4042 6.9246 45 1 2.5459 1.1155 10.3136 46 1 1.1285 0.9923 4.6622 47 1 0.9241 2.6462 5.2890 48 1 1.9484 3.5648 3.2372 49 1 0.5494 2.5430 2.8278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646714284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:48 Heat of formation + Delta-G solvation = 160.719840 kcal Electronic energy + Delta-G solvation = -30643.319274 eV Core-core repulsion = 26643.338810 eV Total energy + Delta-G solvation = -3999.980464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.22921 -42.26758 -38.91563 -36.21618 -35.31162 -33.50374 -32.70670 -32.15287 -31.03607 -30.68524 -29.57208 -27.82670 -26.87801 -25.24732 -24.53069 -23.28246 -22.99189 -22.44933 -21.71662 -20.99017 -20.07752 -19.20884 -18.46002 -17.45937 -16.66669 -16.40497 -16.22523 -15.63787 -15.50009 -14.89049 -14.80703 -14.56402 -14.39806 -14.33300 -14.10340 -13.64787 -13.55052 -13.22360 -13.13289 -12.95156 -12.84853 -12.33823 -12.22364 -12.00814 -11.93172 -11.59942 -11.37139 -11.07462 -10.91967 -10.87495 -10.78261 -10.58896 -10.56877 -10.51906 -10.46141 -10.40352 -9.86165 -9.77358 -9.24754 -8.81127 -8.48227 -8.24772 -7.35462 -6.07712 -4.09240 0.77217 1.83436 1.92611 2.36449 2.56862 2.91913 3.28369 3.36330 3.41160 3.58520 3.80638 3.99699 4.18873 4.33725 4.38161 4.48643 4.66898 4.76713 4.81666 4.88797 4.93819 5.05624 5.07349 5.27836 5.33077 5.35456 5.47160 5.51906 5.62363 5.66339 5.67421 5.69560 5.76831 5.78914 5.85985 5.92326 5.98577 6.19293 6.26204 6.39198 6.46461 6.52120 6.75197 6.76813 7.14392 7.21011 7.25727 7.55391 7.73670 7.99596 8.10162 8.46089 8.51072 8.98530 9.55536 11.03114 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.002208 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.653215 B =12676.893978 C =12988.351711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.470 5.470 4 C 0.245 3.755 5 C 0.034 3.966 6 N -0.571 5.571 7 H 0.418 0.582 8 C 0.211 3.789 9 N -0.489 5.489 10 C 0.076 3.924 11 C -0.075 4.075 12 N -0.257 5.257 13 N -0.299 5.299 14 C 0.368 3.632 15 N -0.469 5.469 16 C 0.072 3.928 17 C 0.059 3.941 18 N -0.537 5.537 19 C 0.194 3.806 20 C -0.508 4.508 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.070 3.930 29 C 0.070 3.930 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.216 0.784 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.032 0.968 43 H -0.008 1.008 44 H 0.032 0.968 45 H 0.261 0.739 46 H 0.030 0.970 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -6.515 -25.616 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.164 5.164 4 C -0.019 4.019 5 C -0.081 4.081 6 N -0.179 5.179 7 H 0.258 0.742 8 C -0.073 4.073 9 N -0.209 5.209 10 C -0.057 4.057 11 C -0.133 4.133 12 N -0.099 5.099 13 N -0.143 5.143 14 C 0.013 3.987 15 N -0.196 5.196 16 C -0.055 4.055 17 C -0.071 4.071 18 N -0.262 5.262 19 C 0.069 3.931 20 C -0.547 4.547 21 H 0.082 0.918 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.059 4.059 29 C -0.057 4.057 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.010 0.990 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.200 -4.868 -26.165 26.806 hybrid contribution -1.063 -1.975 1.775 2.861 sum -4.263 -6.843 -24.390 25.688 Atomic orbital electron populations 1.22211 0.93295 1.04016 1.03518 1.21908 0.96113 0.79060 1.04676 1.46567 1.49685 1.13530 1.06622 1.21282 1.05365 0.89242 0.86020 1.17561 1.13691 0.87685 0.89209 1.43516 1.52714 1.11905 1.09725 0.74194 1.25131 1.02952 0.97214 0.81984 1.70185 1.17913 1.03234 1.29529 1.20969 1.01184 0.97204 0.86356 1.20247 1.01469 0.87715 1.03857 1.74454 1.15899 1.16513 1.03051 1.74747 1.20335 1.16161 1.03061 1.22487 0.99907 0.87453 0.88862 1.59036 1.13308 1.52116 0.95151 1.22294 0.85498 1.01829 0.95909 1.22087 0.99123 0.94879 0.90962 1.62302 1.07941 1.51313 1.04650 1.19718 0.97524 0.94654 0.81168 1.21184 1.36159 1.05586 0.91728 0.91750 1.24990 0.95867 0.95679 0.98065 1.69963 1.45985 1.26140 1.11687 0.86448 0.79167 0.81491 0.80371 1.19597 1.21142 1.20979 1.22027 0.92234 0.99847 0.91816 1.22374 0.95040 0.95469 0.92769 0.90622 0.92354 0.89681 0.90514 0.86712 0.76737 0.90701 0.91063 0.89281 0.91893 0.91173 0.90120 0.95003 0.98981 0.95022 0.92949 0.95149 0.88667 0.91854 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.02 37.16 0.37 -0.70 16 2 C 0.11 0.77 6.22 -4.04 -0.03 0.74 16 3 N -0.47 -5.40 2.84 -114.76 -0.33 -5.73 16 4 C 0.25 3.11 7.87 -153.75 -1.21 1.90 16 5 C 0.03 0.36 7.04 -82.18 -0.58 -0.22 16 6 N -0.57 -3.88 5.92 -10.70 -0.06 -3.94 16 7 H 0.42 1.67 5.79 -40.82 -0.24 1.43 16 8 C 0.21 1.40 13.03 -90.22 -1.18 0.23 16 9 N -0.49 -5.10 11.21 -10.54 -0.12 -5.21 16 10 C 0.08 0.86 7.14 -82.45 -0.59 0.27 16 11 C -0.08 -0.78 9.98 36.01 0.36 -0.42 16 12 N -0.26 -3.92 10.42 32.51 0.34 -3.59 16 13 N -0.30 -4.92 12.15 30.34 0.37 -4.55 16 14 C 0.37 5.28 6.45 -318.67 -2.06 3.22 16 15 N -0.47 -6.78 4.67 -174.31 -0.81 -7.59 16 16 C 0.07 1.07 5.54 -3.77 -0.02 1.05 16 17 C 0.06 1.00 5.61 -3.77 -0.02 0.97 16 18 N -0.54 -11.04 4.70 -235.91 -1.11 -12.15 16 19 C 0.19 4.86 4.72 -4.98 -0.02 4.83 16 20 C -0.51 -13.82 8.47 -34.44 -0.29 -14.11 16 21 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 22 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 29 C 0.07 1.10 5.51 -3.77 -0.02 1.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.36 5.95 -51.93 -0.31 0.05 16 34 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.22 0.41 8.06 -52.48 -0.42 -0.01 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.02 6.69 -51.93 -0.35 0.67 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 41 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H -0.01 -0.20 8.12 -51.93 -0.42 -0.63 16 44 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.10 1.88 6.79 -51.93 -0.35 1.52 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -33.69 394.81 -12.94 -46.63 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.49 Total: -2.24 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -5.40 Total: 1.54 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.99 Total: -68.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.69 -12.94 -46.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646714284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.354 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds