Wall clock time and date at job start Wed Apr 1 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46930 * 2 1 4 4 C 1.37681 * 127.18356 * 276.59551 * 3 2 1 5 5 C 1.47281 * 126.50000 * 359.97438 * 4 3 2 6 6 N 1.37817 * 126.78838 * 357.33304 * 5 4 3 7 7 H 0.96999 * 126.46912 * 0.03126 * 6 5 4 8 8 C 1.35113 * 107.06233 * 180.02562 * 6 5 4 9 9 N 1.30607 * 109.03941 * 359.97438 * 8 6 5 10 10 C 1.33725 * 109.60795 * 359.73482 * 9 8 6 11 11 C 1.50702 * 126.06575 * 180.31401 * 10 9 8 12 12 N 1.31456 * 107.00014 * 180.02562 * 4 3 2 13 13 N 1.28507 * 109.93097 * 359.72904 * 12 4 3 14 14 C 1.31299 * 110.14617 * 0.45076 * 13 12 4 15 15 N 1.38490 * 126.35915 * 179.81906 * 14 13 12 16 16 C 1.46955 * 110.99845 * 295.71762 * 15 14 13 17 17 C 1.53052 * 109.36188 * 183.18674 * 16 15 14 18 18 N 1.46956 * 109.36247 * 301.59318 * 17 16 15 19 19 C 1.46902 * 110.99732 * 183.18645 * 18 17 16 20 20 C 1.50698 * 109.46845 * 170.00121 * 19 18 17 21 21 H 1.08004 * 120.00217 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99754 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47211 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47231 * 119.99980 * 24 22 20 27 27 H 1.48504 * 109.47187 * 239.99759 * 24 22 20 28 28 C 1.46955 * 110.87821 * 59.32651 * 18 17 16 29 29 C 1.46956 * 110.99647 * 59.51069 * 15 14 13 30 30 H 1.09000 * 109.47325 * 305.13339 * 1 2 3 31 31 H 1.08995 * 109.47039 * 65.14329 * 1 2 3 32 32 H 1.09002 * 109.46842 * 185.14386 * 1 2 3 33 33 H 1.08996 * 109.47530 * 240.00205 * 2 1 3 34 34 H 1.09001 * 109.47506 * 119.99782 * 2 1 3 35 35 H 1.08003 * 125.48307 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46328 * 270.14441 * 11 10 9 37 37 H 1.08996 * 109.47446 * 30.13680 * 11 10 9 38 38 H 1.08999 * 109.46992 * 150.14694 * 11 10 9 39 39 H 1.08998 * 109.48842 * 63.21594 * 16 15 14 40 40 H 1.09006 * 109.48647 * 303.14929 * 16 15 14 41 41 H 1.09002 * 109.48480 * 181.63004 * 17 16 15 42 42 H 1.08995 * 109.48994 * 61.56521 * 17 16 15 43 43 H 1.08996 * 109.47417 * 290.00754 * 19 18 17 44 44 H 1.09003 * 109.46856 * 50.00613 * 19 18 17 45 45 H 0.96997 * 120.00025 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.49381 * 60.64120 * 28 18 17 47 47 H 1.09006 * 109.48647 * 180.71130 * 28 18 17 48 48 H 1.08995 * 109.49338 * 296.78169 * 29 15 14 49 49 H 1.09003 * 109.48944 * 56.82488 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1768 2.2077 -1.0896 5 6 1.8863 1.8716 -2.4938 6 7 1.4528 0.6566 -2.9789 7 1 1.2796 -0.1434 -2.4585 8 6 1.3144 0.7903 -4.3163 9 7 1.6376 2.0086 -4.6584 10 6 1.9873 2.7026 -3.5701 11 6 2.4195 4.1459 -3.5392 12 7 2.6377 3.3535 -0.6392 13 7 2.7699 3.3007 0.6380 14 6 2.4119 2.1178 1.0812 15 7 2.4251 1.6968 2.4005 16 6 3.7957 1.6658 2.9297 17 6 3.7753 1.1213 4.3599 18 7 2.9116 1.9704 5.1922 19 6 2.9256 1.5238 6.5917 20 6 2.2354 2.5497 7.4532 21 1 1.8268 3.4437 7.0058 22 6 2.1255 2.3468 8.8125 23 7 2.6235 1.2584 9.3574 24 14 1.2693 3.6181 9.8803 25 1 0.8002 4.7426 9.0314 26 1 0.1061 2.9921 10.5589 27 1 2.2204 4.1299 10.8996 28 6 1.5410 2.0013 4.6631 29 6 1.5614 2.5459 3.2329 30 1 -0.3634 0.5914 0.8404 31 1 -0.3633 0.4320 -0.9324 32 1 -0.3633 -1.0236 0.0921 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.9880 0.0148 -4.9934 36 1 3.5009 4.2040 -3.6635 37 1 1.9312 4.6889 -4.3483 38 1 2.1393 4.5887 -2.5834 39 1 4.2081 2.6748 2.9305 40 1 4.4126 1.0209 2.3038 41 1 4.7874 1.1246 4.7647 42 1 3.3883 0.1024 4.3556 43 1 2.4044 0.5701 6.6740 44 1 3.9566 1.4042 6.9246 45 1 2.5459 1.1155 10.3136 46 1 1.1285 0.9923 4.6622 47 1 0.9241 2.6462 5.2890 48 1 1.9484 3.5648 3.2372 49 1 0.5494 2.5430 2.8278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646714284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:47 Heat of formation + Delta-G solvation = 140.171984 kcal Electronic energy + Delta-G solvation = -30644.210296 eV Core-core repulsion = 26643.338810 eV Total energy + Delta-G solvation = -4000.871486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.19096 -42.98186 -40.29505 -37.06771 -36.79245 -34.61741 -34.18946 -33.11811 -32.07838 -31.77507 -30.75242 -29.32615 -27.80584 -26.83109 -25.29207 -24.68607 -23.93573 -23.60273 -22.99213 -22.02063 -21.03868 -20.38980 -19.19084 -18.52381 -18.37664 -17.67568 -17.27893 -16.65601 -16.37629 -16.29877 -15.94639 -15.69892 -15.61002 -15.39891 -15.34571 -15.02974 -14.71625 -14.24872 -14.02008 -13.87250 -13.72108 -13.56856 -13.45477 -13.17351 -13.08598 -12.80701 -12.64690 -12.56013 -12.52172 -12.36048 -12.27951 -12.17101 -11.79642 -11.68295 -11.45255 -11.24552 -11.23483 -11.16703 -10.66935 -10.61882 -10.03777 -9.10697 -9.06027 -8.20655 -6.29884 -0.06955 0.91666 1.01961 1.40837 1.42607 1.55374 1.73811 1.77012 2.07408 2.40312 2.50335 3.10228 3.11530 3.20220 3.37713 3.62135 3.66322 3.76915 3.81283 4.01074 4.07095 4.13753 4.15760 4.20867 4.26373 4.31860 4.36152 4.41673 4.51647 4.61663 4.67035 4.80706 4.86673 4.89246 4.91788 4.95443 4.97518 5.00634 5.04301 5.12718 5.19315 5.23948 5.32471 5.50365 5.58644 5.65015 6.02592 6.05385 6.28618 6.29285 6.58369 6.85807 6.89878 7.39796 7.47401 8.90414 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.002208 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.653215 B =12676.893978 C =12988.351711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.461 5.461 4 C 0.260 3.740 5 C 0.012 3.988 6 N -0.557 5.557 7 H 0.432 0.568 8 C 0.241 3.759 9 N -0.526 5.526 10 C 0.065 3.935 11 C -0.073 4.073 12 N -0.291 5.291 13 N -0.334 5.334 14 C 0.357 3.643 15 N -0.457 5.457 16 C 0.083 3.917 17 C 0.061 3.939 18 N -0.549 5.549 19 C 0.211 3.789 20 C -0.522 4.522 21 H 0.062 0.938 22 C 0.004 3.996 23 N -0.932 5.932 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.280 1.280 28 C 0.076 3.924 29 C 0.085 3.915 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.267 0.733 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.038 0.962 43 H -0.031 1.031 44 H 0.007 0.993 45 H 0.264 0.736 46 H 0.032 0.968 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -8.158 -27.866 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.154 5.154 4 C -0.005 4.005 5 C -0.104 4.104 6 N -0.165 5.165 7 H 0.276 0.724 8 C -0.043 4.043 9 N -0.246 5.246 10 C -0.069 4.069 11 C -0.131 4.131 12 N -0.133 5.133 13 N -0.178 5.178 14 C 0.000 4.000 15 N -0.183 5.183 16 C -0.045 4.045 17 C -0.067 4.067 18 N -0.274 5.274 19 C 0.085 3.915 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.195 4.195 23 N -0.573 5.573 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.206 1.206 28 C -0.053 4.053 29 C -0.043 4.043 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.282 0.718 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.056 0.944 43 H -0.014 1.014 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.472 -6.542 -28.427 29.511 hybrid contribution -0.686 -1.555 2.284 2.847 sum -5.158 -8.098 -26.142 27.850 Atomic orbital electron populations 1.22186 0.92210 1.05402 1.02553 1.22316 0.96966 0.76927 1.06315 1.46716 1.48823 1.14643 1.05252 1.21565 1.03363 0.88582 0.87003 1.17371 1.15720 0.89358 0.87979 1.43439 1.51913 1.11230 1.09934 0.72405 1.26153 0.99202 0.96855 0.82137 1.70203 1.19846 1.04982 1.29566 1.21124 1.01157 0.97506 0.87143 1.20187 1.01525 0.88137 1.03254 1.74384 1.17981 1.18295 1.02671 1.74641 1.21478 1.17681 1.03965 1.22308 1.00995 0.87721 0.88932 1.59001 1.12675 1.51342 0.95310 1.22160 0.86212 1.01216 0.94874 1.22114 0.98389 0.94659 0.91554 1.62186 1.09770 1.52243 1.03208 1.19340 0.95278 0.93162 0.83737 1.21475 1.36230 1.05847 0.92448 0.92026 1.25853 0.96504 0.97641 0.99460 1.70075 1.47152 1.27909 1.12167 0.85384 0.78125 0.79001 0.78412 1.18923 1.20337 1.20596 1.21930 0.90698 0.99619 0.93005 1.22136 0.96263 0.94400 0.91463 0.93078 0.92102 0.86752 0.87355 0.86651 0.71792 0.90724 0.90290 0.90811 0.93611 0.88684 0.90026 0.94422 1.01377 0.97473 0.92694 0.94982 0.90443 0.93664 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.02 71.98 0.72 -0.85 16 2 C 0.10 1.12 6.22 86.38 0.54 1.66 16 3 N -0.46 -9.92 2.84 -516.98 -1.47 -11.38 16 4 C 0.26 6.36 7.87 135.95 1.07 7.43 16 5 C 0.01 0.23 7.04 40.14 0.28 0.51 16 6 N -0.56 -5.50 5.92 -187.75 -1.11 -6.62 16 7 H 0.43 1.49 5.79 -92.71 -0.54 0.95 16 8 C 0.24 2.19 13.03 180.21 2.35 4.54 16 9 N -0.53 -9.67 11.21 -187.26 -2.10 -11.77 16 10 C 0.06 1.38 7.14 41.83 0.30 1.68 16 11 C -0.07 -1.54 9.98 71.24 0.71 -0.83 16 12 N -0.29 -9.04 10.42 -51.06 -0.53 -9.57 16 13 N -0.33 -11.16 12.15 -57.91 -0.70 -11.87 16 14 C 0.36 10.07 6.45 260.04 1.68 11.74 16 15 N -0.46 -12.96 4.67 -705.40 -3.30 -16.25 16 16 C 0.08 2.43 5.54 86.31 0.48 2.91 16 17 C 0.06 2.10 5.61 86.31 0.48 2.58 16 18 N -0.55 -23.17 4.70 -900.27 -4.23 -27.40 16 19 C 0.21 10.93 4.72 85.56 0.40 11.34 16 20 C -0.52 -29.05 8.47 25.60 0.22 -28.83 16 21 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 22 C 0.00 0.20 5.46 84.66 0.46 0.66 16 23 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 24 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 C 0.08 2.84 5.43 86.31 0.47 3.31 16 29 C 0.08 2.67 5.51 86.31 0.48 3.14 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 32 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.57 5.95 -2.39 -0.01 0.56 16 34 H 0.12 1.42 8.08 -2.39 -0.02 1.40 16 35 H 0.27 -0.59 8.06 -2.91 -0.02 -0.62 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.77 6.69 -2.39 -0.02 1.75 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 2.36 8.13 -2.38 -0.02 2.34 16 41 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H -0.03 -1.75 8.12 -2.39 -0.02 -1.77 16 44 H 0.01 0.40 8.03 -2.39 -0.02 0.38 16 45 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.08 3.14 6.79 -2.38 -0.02 3.13 16 48 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.09 2.48 8.13 -2.39 -0.02 2.46 16 Total: -1.00 -76.33 394.81 -0.06 -76.39 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.43 Total: 6.39 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 10.63 Total: 20.98 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -13.16 Total: -149.73 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -76.33 -0.06 -76.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646714284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.566 kcal (2) G-P(sol) polarization free energy of solvation -76.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds