Wall clock time and date at job start Wed Apr 1 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00215 * 2 1 4 4 C 1.52998 * 109.47403 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.36738 * 127.13942 * 85.14280 * 5 4 3 7 7 C 1.50703 * 126.34314 * 0.02562 * 6 5 4 8 8 H 1.08997 * 115.55161 * 334.32044 * 7 6 5 9 9 C 1.53004 * 117.49637 * 188.61991 * 7 6 5 10 10 C 1.53000 * 117.49770 * 119.99909 * 7 6 5 11 11 H 1.08996 * 117.49900 * 214.97207 * 10 7 6 12 12 C 1.47198 * 117.50048 * 359.97438 * 10 7 6 13 13 N 7.55287 * 145.36818 * 35.98282 * 2 1 3 14 14 N 1.30292 * 107.30797 * 179.97438 * 6 5 4 15 15 N 1.28530 * 110.05237 * 359.97438 * 14 6 5 16 16 C 1.31207 * 109.85959 * 359.74805 * 15 14 6 17 17 N 1.38589 * 126.47416 * 180.25521 * 16 15 14 18 18 C 1.46846 * 110.99617 * 69.25993 * 17 16 15 19 19 C 1.53040 * 109.52183 * 174.16173 * 18 17 16 20 20 C 1.53124 * 109.27737 * 59.17939 * 19 18 17 21 21 C 1.53122 * 109.15813 * 302.34551 * 20 19 18 22 22 H 1.08995 * 109.50362 * 297.71013 * 21 20 19 23 23 C 1.50698 * 109.50330 * 177.59743 * 21 20 19 24 24 H 1.08006 * 120.00148 * 275.42539 * 23 21 20 25 25 C 1.37879 * 120.00251 * 95.42087 * 23 21 20 26 26 N 1.31512 * 120.00139 * 174.90910 * 25 23 21 27 27 Si 1.86801 * 119.99863 * 354.91456 * 25 23 21 28 28 H 1.48504 * 109.46784 * 94.79511 * 27 25 23 29 29 H 1.48494 * 109.46983 * 214.79405 * 27 25 23 30 30 H 1.48493 * 109.47018 * 334.79649 * 27 25 23 31 31 C 1.46842 * 110.99713 * 305.05103 * 17 16 15 32 32 H 1.09001 * 109.46798 * 300.00225 * 1 2 3 33 33 H 1.08999 * 109.47173 * 59.99617 * 1 2 3 34 34 H 1.08991 * 109.47354 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47284 * 59.99494 * 3 2 1 36 36 H 1.08999 * 109.47287 * 299.99975 * 3 2 1 37 37 H 1.08996 * 109.47005 * 60.00025 * 4 3 2 38 38 H 1.08999 * 109.47394 * 299.99988 * 4 3 2 39 39 H 1.09000 * 117.49895 * 359.97438 * 9 7 6 40 40 H 1.08992 * 117.50059 * 145.02187 * 9 7 6 41 41 H 1.08999 * 109.46283 * 294.17119 * 18 17 16 42 42 H 1.08997 * 109.46849 * 54.14938 * 18 17 16 43 43 H 1.09002 * 109.50469 * 299.24104 * 19 18 17 44 44 H 1.09000 * 109.53974 * 179.13548 * 19 18 17 45 45 H 1.08998 * 109.52495 * 182.44235 * 20 19 18 46 46 H 1.08991 * 109.52417 * 62.25117 * 20 19 18 47 47 H 0.97003 * 120.00506 * 179.97438 * 26 25 23 48 48 H 1.08997 * 109.46524 * 305.85077 * 31 17 16 49 49 H 1.08997 * 109.46637 * 65.83394 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 4.3824 3.3144 1.0877 7 6 4.0962 2.9721 2.5272 8 1 3.2932 2.2530 2.6888 9 6 4.2702 4.0825 3.5653 10 6 5.2815 2.9366 3.4940 11 1 5.2581 2.1944 4.2919 12 6 6.6142 3.2388 2.9468 13 7 7.6436 3.4733 2.5219 14 7 4.9158 4.4187 0.6478 15 7 5.0187 4.3789 -0.6327 16 6 4.5574 3.2356 -1.0816 17 7 4.5086 2.8298 -2.4059 18 6 5.8576 2.5804 -2.9298 19 6 5.7583 1.9971 -4.3412 20 6 5.0138 2.9840 -5.2448 21 6 3.6305 3.2639 -4.6510 22 1 3.0531 2.3399 -4.6221 23 6 2.9135 4.2796 -5.5026 24 1 3.0866 5.3341 -5.3464 25 6 2.0365 3.8627 -6.4815 26 7 1.3358 4.7473 -7.1568 27 14 1.8433 2.0412 -6.8482 28 1 0.6937 1.5007 -6.0792 29 1 1.6001 1.8519 -8.3009 30 1 3.0826 1.3233 -6.4561 31 6 3.7915 3.8104 -3.2306 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 1.6886 1.8464 0.8900 36 1 1.6887 1.8464 -0.8900 37 1 3.8574 0.6436 -0.8891 38 1 3.8568 0.6439 0.8908 39 1 4.5920 5.0604 3.2072 40 1 3.5816 4.0941 4.4101 41 1 6.4135 3.5174 -2.9625 42 1 6.3746 1.8739 -2.2805 43 1 5.2143 1.0531 -4.3074 44 1 6.7596 1.8262 -4.7363 45 1 4.9027 2.5539 -6.2402 46 1 5.5773 3.9146 -5.3100 47 1 0.7190 4.4541 -7.8457 48 1 2.8079 3.9974 -2.7998 49 1 4.3572 4.7416 -3.2620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646818333.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:40 Heat of formation + Delta-G solvation = 98.156779 kcal Electronic energy + Delta-G solvation = -31149.381079 eV Core-core repulsion = 27114.394926 eV Total energy + Delta-G solvation = -4034.986153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.04676 -38.87704 -38.30045 -38.27045 -35.74768 -35.26477 -33.83658 -32.23279 -30.43794 -30.09236 -29.21411 -26.62415 -25.16891 -25.11400 -24.22368 -24.15272 -23.45687 -21.62731 -20.74131 -20.61816 -18.80240 -18.28062 -17.32332 -17.05302 -16.54045 -16.41018 -16.21981 -15.82046 -15.56696 -14.99842 -14.66757 -14.27988 -14.21008 -13.93792 -13.68442 -13.63932 -13.24632 -13.02743 -12.84161 -12.73945 -12.60301 -12.58324 -12.30181 -12.28628 -11.86878 -11.69740 -11.47885 -11.30558 -11.21993 -11.08590 -10.96768 -10.82047 -10.52415 -10.25238 -10.21061 -10.01458 -9.93863 -9.70652 -9.52731 -9.13179 -8.83509 -8.56127 -8.40118 -6.12642 -4.12617 1.50909 2.02509 2.28201 2.57642 2.86301 3.24344 3.34415 3.36373 3.38002 3.51189 3.62756 3.88759 4.06795 4.17677 4.32074 4.37963 4.40871 4.58998 4.63133 4.89639 5.04970 5.07570 5.10827 5.14719 5.18010 5.24248 5.26030 5.35990 5.40943 5.44227 5.51024 5.57715 5.67213 5.74246 5.88562 5.99949 6.09248 6.17045 6.23885 6.40917 6.52828 6.55645 6.68897 6.74747 6.83143 7.08852 7.26669 7.40737 7.42139 7.52901 7.72998 8.46896 8.75436 8.93245 9.49949 11.00344 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.003581 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.495802 B = 7818.102371 C = 9146.774236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.049 3.951 4 C 0.115 3.885 5 N -0.461 5.461 6 C 0.183 3.817 7 C -0.052 4.052 8 H 0.142 0.858 9 C -0.117 4.117 10 C -0.055 4.055 11 H 0.157 0.843 12 C 0.226 3.774 13 N -0.413 5.413 14 N -0.273 5.273 15 N -0.306 5.306 16 C 0.374 3.626 17 N -0.473 5.473 18 C 0.074 3.926 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.025 3.975 22 H 0.040 0.960 23 C -0.513 4.513 24 H 0.074 0.926 25 C 0.074 3.926 26 N -0.898 5.898 27 Si 0.875 3.125 28 H -0.279 1.279 29 H -0.289 1.289 30 H -0.258 1.258 31 C 0.087 3.913 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.264 0.736 48 H 0.067 0.933 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -11.069 22.470 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.028 4.028 4 C -0.008 4.008 5 N -0.155 5.155 6 C -0.084 4.084 7 C -0.074 4.074 8 H 0.159 0.841 9 C -0.156 4.156 10 C -0.078 4.078 11 H 0.175 0.825 12 C -0.092 4.092 13 N -0.088 5.088 14 N -0.114 5.114 15 N -0.149 5.149 16 C 0.018 3.982 17 N -0.200 5.200 18 C -0.053 4.053 19 C -0.157 4.157 20 C -0.155 4.155 21 C 0.005 3.995 22 H 0.058 0.942 23 C -0.551 4.551 24 H 0.092 0.908 25 C -0.128 4.128 26 N -0.535 5.535 27 Si 0.702 3.298 28 H -0.205 1.205 29 H -0.215 1.215 30 H -0.182 1.182 31 C -0.039 4.039 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.306 -9.933 21.601 23.887 hybrid contribution -1.090 -1.472 -0.287 1.854 sum 1.216 -11.405 21.314 24.204 Atomic orbital electron populations 1.22793 0.79954 1.03076 1.00531 1.87778 1.20537 1.26590 1.95585 1.22727 0.92563 0.85695 1.01865 1.21532 0.92454 0.80483 1.06342 1.46092 1.46803 1.16086 1.06515 1.23433 1.04869 0.90207 0.89867 1.20245 0.99286 1.04664 0.83211 0.84063 1.23293 0.98466 0.94683 0.99198 1.19437 0.81403 1.05245 1.01676 0.82539 1.27751 0.93722 0.93863 0.93822 1.81342 1.12309 1.07702 1.07477 1.73967 1.15974 1.17633 1.03805 1.74755 1.20573 1.16795 1.02755 1.22708 0.98107 0.88238 0.89128 1.59043 1.19097 1.46890 0.94995 1.22073 0.86487 1.00133 0.96589 1.21712 1.00363 1.00037 0.93564 1.21958 0.97993 0.97362 0.98185 1.19168 0.93315 0.97119 0.89890 0.94222 1.20899 1.23865 0.93998 1.16385 0.90836 1.25029 0.94693 0.97379 0.95715 1.69914 1.25682 1.33899 1.24003 0.86889 0.79119 0.86344 0.77466 1.20528 1.21523 1.18239 1.22408 0.96247 0.91505 0.93730 0.93900 0.93406 0.89220 0.92742 0.91612 0.86807 0.88217 0.86219 0.85600 0.93298 0.92025 0.91765 0.92002 0.92408 0.92646 0.92616 0.91418 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.03 10.70 -35.23 -0.38 -4.41 16 3 C 0.05 0.50 6.26 37.16 0.23 0.74 16 4 C 0.12 1.19 6.35 -4.04 -0.03 1.17 16 5 N -0.46 -6.20 2.81 -114.09 -0.32 -6.52 16 6 C 0.18 2.32 6.71 -154.02 -1.03 1.29 16 7 C -0.05 -0.36 5.96 -91.77 -0.55 -0.90 16 8 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 9 C -0.12 -0.62 9.83 -26.73 -0.26 -0.88 16 10 C -0.06 -0.32 6.22 -93.41 -0.58 -0.90 16 11 H 0.16 0.26 8.14 -51.93 -0.42 -0.16 16 12 C 0.23 2.57 14.31 -20.69 -0.30 2.27 16 13 N -0.41 -6.24 18.55 42.24 0.78 -5.46 16 14 N -0.27 -4.57 11.46 32.99 0.38 -4.19 16 15 N -0.31 -5.86 12.11 30.31 0.37 -5.49 16 16 C 0.37 6.42 6.47 -318.87 -2.06 4.36 16 17 N -0.47 -8.42 4.64 -174.56 -0.81 -9.23 16 18 C 0.07 1.24 5.40 -3.83 -0.02 1.22 16 19 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 20 C -0.12 -2.37 5.07 -26.60 -0.13 -2.50 16 21 C 0.02 0.56 1.80 -91.69 -0.17 0.39 16 22 H 0.04 0.91 5.59 -51.93 -0.29 0.62 16 23 C -0.51 -13.95 8.86 -34.44 -0.31 -14.25 16 24 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 25 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 26 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 27 Si 0.87 20.84 26.61 -169.99 -4.52 16.31 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.26 -5.80 6.06 56.52 0.34 -5.46 16 31 C 0.09 1.80 4.57 -3.84 -0.02 1.78 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 38 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.12 0.94 7.92 -51.93 -0.41 0.52 16 40 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.21 7.12 -51.93 -0.37 0.84 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 49 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 406.70 15.07 6.13 6.13 Total: -1.00 -35.62 406.70 -9.83 -45.46 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.86 Total: -1.48 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.37 Total: -5.01 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 1.17 Total: -57.00 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.38 Total: -4.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.52 Total: 16.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.62 -9.83 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646818333.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.612 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds