Wall clock time and date at job start Wed Apr 1 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36450 * 127.13491 * 2 1 4 4 N 1.38582 * 126.47391 * 0.03514 * 3 2 1 5 5 C 1.46846 * 111.00134 * 303.92803 * 4 3 2 6 6 C 1.53038 * 109.52296 * 174.15849 * 5 4 3 7 7 C 1.53123 * 109.27962 * 59.17628 * 6 5 4 8 8 C 1.53120 * 109.15950 * 302.34705 * 7 6 5 9 9 H 1.09010 * 109.50256 * 297.70858 * 8 7 6 10 10 N 1.46506 * 109.50329 * 177.59691 * 8 7 6 11 11 C 1.35315 * 125.86501 * 324.90678 * 10 8 7 12 12 C 1.35352 * 106.17210 * 179.90818 * 11 10 8 13 13 N 1.33769 * 106.49749 * 0.35103 * 12 11 10 14 14 N 1.28639 * 108.88492 * 359.77639 * 13 12 11 15 15 C 1.46848 * 111.00251 * 179.71048 * 4 3 2 16 16 N 1.31216 * 107.05459 * 179.77798 * 3 2 1 17 17 N 1.28524 * 109.85780 * 0.21983 * 16 3 2 18 18 C 1.30293 * 110.05731 * 0.02562 * 17 16 3 19 19 C 1.50697 * 126.35124 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47089 * 239.69812 * 19 18 17 21 21 C 1.53006 * 109.47148 * 359.69480 * 19 18 17 22 22 C 1.50694 * 109.47343 * 119.69247 * 19 18 17 23 23 H 1.08003 * 120.00300 * 0.02562 * 22 19 18 24 24 C 1.37886 * 120.00046 * 179.97438 * 22 19 18 25 25 N 1.31511 * 119.99864 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99851 * 180.02562 * 24 22 19 27 27 H 1.48505 * 109.47229 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47038 * 120.00694 * 26 24 22 29 29 H 1.48504 * 109.47011 * 240.00481 * 26 24 22 30 30 H 1.09002 * 109.47328 * 89.84019 * 1 2 3 31 31 H 1.09004 * 109.46921 * 209.84448 * 1 2 3 32 32 H 1.09005 * 109.47352 * 329.83868 * 1 2 3 33 33 H 1.08998 * 109.46069 * 294.17032 * 5 4 3 34 34 H 1.08989 * 109.46413 * 54.14470 * 5 4 3 35 35 H 1.08994 * 109.50496 * 179.11772 * 6 5 4 36 36 H 1.09003 * 109.50160 * 299.23743 * 6 5 4 37 37 H 1.08997 * 109.52191 * 182.44210 * 7 6 5 38 38 H 1.08999 * 109.52300 * 62.25122 * 7 6 5 39 39 H 1.08002 * 126.91232 * 0.02562 * 11 10 8 40 40 H 1.07993 * 126.74997 * 180.12950 * 12 11 10 41 41 H 1.08999 * 109.45835 * 65.82778 * 15 4 3 42 42 H 1.09000 * 109.45657 * 305.85465 * 15 4 3 43 43 H 1.08993 * 109.47210 * 53.99018 * 20 19 18 44 44 H 1.09002 * 109.46909 * 173.99327 * 20 19 18 45 45 H 1.09005 * 109.46964 * 293.98844 * 20 19 18 46 46 H 1.09003 * 109.46781 * 59.99790 * 21 19 18 47 47 H 1.08996 * 109.47151 * 179.97438 * 21 19 18 48 48 H 1.09001 * 109.46534 * 300.00171 * 21 19 18 49 49 H 0.96999 * 119.99764 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0007 5 6 1.0145 2.7067 -1.1363 6 6 0.4877 4.1390 -1.0230 7 6 1.6693 5.1128 -1.0097 8 6 2.5987 4.7594 0.1547 9 1 2.0623 4.8755 1.0966 10 7 3.7616 5.6504 0.1402 11 6 4.3732 6.1377 -0.9640 12 6 5.3908 6.9122 -0.5206 13 7 5.3572 6.8552 0.8155 14 7 4.3805 6.0995 1.1756 15 6 3.0643 3.3091 0.0074 16 7 3.5211 0.6373 0.0049 17 7 3.5162 -0.6479 0.0032 18 6 2.2905 -1.0900 -0.0033 19 6 1.8621 -2.5348 -0.0067 20 6 1.0256 -2.8158 -1.2565 21 6 3.1002 -3.4339 -0.0089 22 6 1.0384 -2.8174 1.2232 23 1 0.8441 -2.0295 1.9359 24 6 0.5319 -4.0817 1.4382 25 7 0.7680 -5.0411 0.5702 26 14 -0.4898 -4.4318 2.9623 27 1 -0.6092 -3.1936 3.7734 28 1 -1.8429 -4.8899 2.5568 29 1 0.1702 -5.4902 3.7682 30 1 -0.3634 0.0029 -1.0277 31 1 -0.3633 -0.8914 0.5114 32 1 -0.3634 0.8886 0.5164 33 1 1.5723 2.5974 -2.0664 34 1 0.1763 2.0101 -1.1316 35 1 -0.1553 4.3588 -1.8752 36 1 -0.0819 4.2453 -0.0997 37 1 1.3008 6.1310 -0.8856 38 1 2.2165 5.0344 -1.9492 39 1 4.1025 5.9485 -1.9923 40 1 6.0939 7.4644 -1.1263 41 1 3.6125 3.1969 -0.9281 42 1 3.7147 3.0498 0.8427 43 1 1.5825 -2.5111 -2.1425 44 1 0.8057 -3.8819 -1.3144 45 1 0.0926 -2.2547 -1.2030 46 1 3.6962 -3.2337 0.8815 47 1 2.7903 -4.4789 -0.0109 48 1 3.6960 -3.2294 -0.8985 49 1 0.4120 -5.9305 0.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647678633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:27 Heat of formation + Delta-G solvation = 192.869180 kcal Electronic energy + Delta-G solvation = -31324.896682 eV Core-core repulsion = 27326.310318 eV Total energy + Delta-G solvation = -3998.586364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.48118 -42.41323 -39.49592 -35.91275 -35.39101 -34.01974 -33.17298 -31.44294 -31.21995 -30.23611 -28.25374 -27.22218 -25.80682 -25.40108 -24.89398 -24.58307 -22.95940 -22.23901 -21.68813 -20.76851 -20.07597 -19.03914 -18.16798 -16.88782 -16.59673 -16.29788 -15.79811 -15.68058 -15.35035 -15.16628 -14.92401 -14.74418 -14.39712 -14.23867 -13.83596 -13.43780 -13.22732 -13.15582 -12.72598 -12.50608 -12.22176 -11.93790 -11.76357 -11.55377 -11.49713 -11.42132 -11.30850 -11.18841 -11.03432 -10.95463 -10.82159 -10.62168 -10.38928 -10.35612 -10.23449 -9.94143 -9.89699 -9.58427 -9.57456 -9.30928 -9.00700 -8.55949 -7.77094 -6.20649 -4.32775 1.38208 1.93601 2.37109 2.41771 2.76885 3.15302 3.25580 3.27997 3.53358 3.75518 3.85287 4.12157 4.23906 4.24805 4.30858 4.48676 4.65373 4.79035 4.86083 4.96021 5.01582 5.03808 5.05695 5.11053 5.19433 5.31227 5.40483 5.41885 5.47404 5.51680 5.54279 5.68411 5.75557 5.94560 5.95239 5.97076 6.32169 6.40013 6.53839 6.66417 6.71427 6.75062 6.96091 7.10073 7.23380 7.44672 7.48793 7.65842 7.82823 7.97055 8.14115 8.33697 8.64734 9.33455 9.47574 10.80775 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.002639 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.386441 B =10608.456889 C =10860.218452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.473 5.473 3 C 0.313 3.687 4 N -0.440 5.440 5 C 0.041 3.959 6 C -0.109 4.109 7 C -0.131 4.131 8 C 0.146 3.854 9 H 0.126 0.874 10 N -0.282 5.282 11 C -0.048 4.048 12 C -0.053 4.053 13 N -0.273 5.273 14 N -0.080 5.080 15 C 0.070 3.930 16 N -0.326 5.326 17 N -0.310 5.310 18 C 0.252 3.748 19 C 0.145 3.855 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.516 4.516 23 H 0.056 0.944 24 C 0.074 3.926 25 N -0.878 5.878 26 Si 0.895 3.105 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.011 0.989 44 H 0.094 0.906 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.089 0.911 48 H 0.018 0.982 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 18.504 -8.230 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.167 5.167 3 C -0.044 4.044 4 N -0.164 5.164 5 C -0.087 4.087 6 C -0.148 4.148 7 C -0.169 4.169 8 C 0.044 3.956 9 H 0.143 0.857 10 N -0.076 5.076 11 C -0.199 4.199 12 C -0.210 4.210 13 N -0.139 5.139 14 N -0.060 5.060 15 C -0.059 4.059 16 N -0.171 5.171 17 N -0.148 5.148 18 C -0.016 4.016 19 C 0.142 3.858 20 C -0.188 4.188 21 C -0.176 4.176 22 C -0.554 4.554 23 H 0.075 0.925 24 C -0.129 4.129 25 N -0.515 5.515 26 Si 0.722 3.278 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.205 0.795 40 H 0.206 0.794 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.031 0.969 44 H 0.112 0.888 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.107 0.893 48 H 0.037 0.963 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.684 18.432 -6.266 19.652 hybrid contribution -1.699 -0.325 -1.017 2.006 sum -4.382 18.108 -7.283 20.003 Atomic orbital electron populations 1.22227 0.76021 1.05909 1.02828 1.45930 1.08479 1.05414 1.56839 1.22132 0.87925 0.86205 1.08095 1.58359 1.17902 0.97970 1.42188 1.22499 0.96995 0.98124 0.91043 1.21551 0.96781 0.92234 1.04186 1.22035 0.96624 1.01080 0.97199 1.21715 0.82582 0.87895 1.03438 0.85658 1.47507 1.22819 1.32327 1.04912 1.23613 0.98437 1.02912 0.94951 1.23614 1.01081 1.04083 0.92243 1.75133 1.12557 1.13866 1.12345 1.78380 1.04318 1.10823 1.12438 1.22165 0.91013 0.88230 1.04522 1.74440 1.15318 1.04955 1.22348 1.73995 1.18238 1.01155 1.21370 1.26123 0.85094 0.92751 0.97638 1.16943 0.94364 0.78823 0.95696 1.21882 0.97437 1.04719 0.94721 1.21627 0.95281 1.02479 0.98202 1.20902 1.32541 0.96188 1.05796 0.92534 1.24845 0.95853 0.95801 0.96430 1.69818 1.44441 1.02284 1.34943 0.86484 0.79800 0.78584 0.82891 1.19796 1.20835 1.20685 0.91383 0.86560 0.90293 0.93219 0.89085 0.89363 0.89836 0.89873 0.90437 0.79548 0.79407 0.92177 0.87965 0.96945 0.88759 0.95070 0.94545 0.89267 0.96293 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 7.91 59.85 0.47 1.54 16 2 N -0.47 -8.81 3.21 -121.46 -0.39 -9.20 16 3 C 0.31 5.61 7.21 -318.88 -2.30 3.31 16 4 N -0.44 -5.74 4.70 -174.56 -0.82 -6.56 16 5 C 0.04 0.38 5.28 -3.83 -0.02 0.36 16 6 C -0.11 -0.64 6.09 -26.65 -0.16 -0.80 16 7 C -0.13 -0.76 4.98 -26.61 -0.13 -0.90 16 8 C 0.15 1.32 3.29 -67.85 -0.22 1.09 16 9 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 10 N -0.28 -3.00 3.26 -54.68 -0.18 -3.17 16 11 C -0.05 -0.41 10.68 -17.04 -0.18 -0.59 16 12 C -0.05 -0.52 12.05 -17.74 -0.21 -0.73 16 13 N -0.27 -3.74 12.41 30.23 0.38 -3.37 16 14 N -0.08 -1.11 13.17 60.35 0.79 -0.32 16 15 C 0.07 0.85 4.49 -3.84 -0.02 0.83 16 16 N -0.33 -6.98 11.24 30.31 0.34 -6.64 16 17 N -0.31 -7.34 11.50 32.99 0.38 -6.96 16 18 C 0.25 5.61 6.28 -154.02 -0.97 4.64 16 19 C 0.14 3.35 0.52 -156.81 -0.08 3.27 16 20 C -0.13 -2.78 7.98 37.16 0.30 -2.48 16 21 C -0.12 -2.82 7.75 37.16 0.29 -2.54 16 22 C -0.52 -12.65 6.45 -34.44 -0.22 -12.87 16 23 H 0.06 1.43 7.41 -52.48 -0.39 1.04 16 24 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 25 N -0.88 -22.00 9.42 55.43 0.52 -21.48 16 26 Si 0.89 19.47 29.54 -169.99 -5.02 14.44 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.07 0.83 7.65 -51.93 -0.40 0.43 16 31 H 0.12 1.93 5.89 -51.93 -0.31 1.63 16 32 H 0.08 0.94 7.67 -51.93 -0.40 0.54 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.85 5.23 -51.94 -0.27 0.58 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.39 7.06 -51.93 -0.37 0.02 16 39 H 0.19 0.90 7.25 -52.49 -0.38 0.52 16 40 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.54 7.92 -51.93 -0.41 1.13 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 2.20 6.25 -51.93 -0.32 1.87 16 45 H 0.03 0.61 6.48 -51.93 -0.34 0.27 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -31.56 380.40 -9.08 -40.64 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.26 Total: 1.02 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.56 Total: -4.14 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 1.02 Total: -57.69 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.56 -9.08 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647678633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.508 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds