Wall clock time and date at job start Wed Apr 1 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36450 * 127.13491 * 2 1 4 4 N 1.38582 * 126.47391 * 0.03514 * 3 2 1 5 5 C 1.46846 * 111.00134 * 303.92803 * 4 3 2 6 6 C 1.53038 * 109.52296 * 174.15849 * 5 4 3 7 7 C 1.53123 * 109.27962 * 59.17628 * 6 5 4 8 8 C 1.53120 * 109.15950 * 302.34705 * 7 6 5 9 9 H 1.09010 * 109.50256 * 297.70858 * 8 7 6 10 10 N 1.46506 * 109.50329 * 177.59691 * 8 7 6 11 11 C 1.35315 * 125.86501 * 324.90678 * 10 8 7 12 12 C 1.35352 * 106.17210 * 179.90818 * 11 10 8 13 13 N 1.33769 * 106.49749 * 0.35103 * 12 11 10 14 14 N 1.28639 * 108.88492 * 359.77639 * 13 12 11 15 15 C 1.46848 * 111.00251 * 179.71048 * 4 3 2 16 16 N 1.31216 * 107.05459 * 179.77798 * 3 2 1 17 17 N 1.28524 * 109.85780 * 0.21983 * 16 3 2 18 18 C 1.30293 * 110.05731 * 0.02562 * 17 16 3 19 19 C 1.50697 * 126.35124 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47089 * 239.69812 * 19 18 17 21 21 C 1.53006 * 109.47148 * 359.69480 * 19 18 17 22 22 C 1.50694 * 109.47343 * 119.69247 * 19 18 17 23 23 H 1.08003 * 120.00300 * 0.02562 * 22 19 18 24 24 C 1.37886 * 120.00046 * 179.97438 * 22 19 18 25 25 N 1.31511 * 119.99864 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99851 * 180.02562 * 24 22 19 27 27 H 1.48505 * 109.47229 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47038 * 120.00694 * 26 24 22 29 29 H 1.48504 * 109.47011 * 240.00481 * 26 24 22 30 30 H 1.09002 * 109.47328 * 89.84019 * 1 2 3 31 31 H 1.09004 * 109.46921 * 209.84448 * 1 2 3 32 32 H 1.09005 * 109.47352 * 329.83868 * 1 2 3 33 33 H 1.08998 * 109.46069 * 294.17032 * 5 4 3 34 34 H 1.08989 * 109.46413 * 54.14470 * 5 4 3 35 35 H 1.08994 * 109.50496 * 179.11772 * 6 5 4 36 36 H 1.09003 * 109.50160 * 299.23743 * 6 5 4 37 37 H 1.08997 * 109.52191 * 182.44210 * 7 6 5 38 38 H 1.08999 * 109.52300 * 62.25122 * 7 6 5 39 39 H 1.08002 * 126.91232 * 0.02562 * 11 10 8 40 40 H 1.07993 * 126.74997 * 180.12950 * 12 11 10 41 41 H 1.08999 * 109.45835 * 65.82778 * 15 4 3 42 42 H 1.09000 * 109.45657 * 305.85465 * 15 4 3 43 43 H 1.08993 * 109.47210 * 53.99018 * 20 19 18 44 44 H 1.09002 * 109.46909 * 173.99327 * 20 19 18 45 45 H 1.09005 * 109.46964 * 293.98844 * 20 19 18 46 46 H 1.09003 * 109.46781 * 59.99790 * 21 19 18 47 47 H 1.08996 * 109.47151 * 179.97438 * 21 19 18 48 48 H 1.09001 * 109.46534 * 300.00171 * 21 19 18 49 49 H 0.96999 * 119.99764 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0007 5 6 1.0145 2.7067 -1.1363 6 6 0.4877 4.1390 -1.0230 7 6 1.6693 5.1128 -1.0097 8 6 2.5987 4.7594 0.1547 9 1 2.0623 4.8755 1.0966 10 7 3.7616 5.6504 0.1402 11 6 4.3732 6.1377 -0.9640 12 6 5.3908 6.9122 -0.5206 13 7 5.3572 6.8552 0.8155 14 7 4.3805 6.0995 1.1756 15 6 3.0643 3.3091 0.0074 16 7 3.5211 0.6373 0.0049 17 7 3.5162 -0.6479 0.0032 18 6 2.2905 -1.0900 -0.0033 19 6 1.8621 -2.5348 -0.0067 20 6 1.0256 -2.8158 -1.2565 21 6 3.1002 -3.4339 -0.0089 22 6 1.0384 -2.8174 1.2232 23 1 0.8441 -2.0295 1.9359 24 6 0.5319 -4.0817 1.4382 25 7 0.7680 -5.0411 0.5702 26 14 -0.4898 -4.4318 2.9623 27 1 -0.6092 -3.1936 3.7734 28 1 -1.8429 -4.8899 2.5568 29 1 0.1702 -5.4902 3.7682 30 1 -0.3634 0.0029 -1.0277 31 1 -0.3633 -0.8914 0.5114 32 1 -0.3634 0.8886 0.5164 33 1 1.5723 2.5974 -2.0664 34 1 0.1763 2.0101 -1.1316 35 1 -0.1553 4.3588 -1.8752 36 1 -0.0819 4.2453 -0.0997 37 1 1.3008 6.1310 -0.8856 38 1 2.2165 5.0344 -1.9492 39 1 4.1025 5.9485 -1.9923 40 1 6.0939 7.4644 -1.1263 41 1 3.6125 3.1969 -0.9281 42 1 3.7147 3.0498 0.8427 43 1 1.5825 -2.5111 -2.1425 44 1 0.8057 -3.8819 -1.3144 45 1 0.0926 -2.2547 -1.2030 46 1 3.6962 -3.2337 0.8815 47 1 2.7903 -4.4789 -0.0109 48 1 3.6960 -3.2294 -0.8985 49 1 0.4120 -5.9305 0.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647678633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:26 Heat of formation + Delta-G solvation = 174.496411 kcal Electronic energy + Delta-G solvation = -31325.693385 eV Core-core repulsion = 27326.310318 eV Total energy + Delta-G solvation = -3999.383067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.28620 -43.91024 -40.39788 -37.62451 -36.44359 -35.38941 -33.99524 -33.19451 -31.99341 -31.06732 -29.72335 -28.51888 -27.60853 -27.29747 -25.80168 -25.46796 -23.76322 -23.65600 -22.67335 -21.93865 -20.98237 -20.59019 -19.06205 -18.44556 -17.69703 -17.32736 -17.16745 -16.97794 -16.75746 -16.13760 -15.92753 -15.69083 -15.34541 -15.09111 -14.96646 -14.77666 -14.54922 -14.11097 -14.00830 -13.73615 -13.41576 -13.30923 -12.99003 -12.91897 -12.74888 -12.69393 -12.60275 -12.37438 -12.30375 -12.25094 -12.06774 -11.99047 -11.86199 -11.74285 -11.67844 -11.44002 -11.17201 -11.04793 -10.92504 -10.60485 -10.44093 -10.34695 -9.22991 -8.08624 -6.25896 0.59635 0.93483 1.10761 1.41585 1.47831 1.54611 1.56275 1.63020 1.94660 2.42962 2.61808 3.15677 3.20437 3.34729 3.54101 3.68401 3.71501 3.88200 3.93716 3.96670 4.08937 4.19082 4.23931 4.29419 4.34784 4.36072 4.40676 4.51486 4.59650 4.69419 4.71556 4.76124 4.82201 4.89721 4.95005 4.95478 4.99149 5.11053 5.18973 5.22651 5.27945 5.34339 5.48204 5.51941 5.56792 5.64044 5.70114 5.96571 6.04764 6.24994 6.27657 6.73237 7.42019 7.51271 7.89988 8.91870 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.002639 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.386441 B =10608.456889 C =10860.218452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.472 5.472 3 C 0.337 3.663 4 N -0.436 5.436 5 C 0.035 3.965 6 C -0.098 4.098 7 C -0.123 4.123 8 C 0.153 3.847 9 H 0.121 0.879 10 N -0.282 5.282 11 C -0.033 4.033 12 C -0.063 4.063 13 N -0.312 5.312 14 N -0.129 5.129 15 C 0.076 3.924 16 N -0.367 5.367 17 N -0.346 5.346 18 C 0.231 3.769 19 C 0.143 3.857 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.522 4.522 23 H 0.044 0.956 24 C 0.039 3.961 25 N -0.895 5.895 26 Si 0.949 3.051 27 H -0.276 1.276 28 H -0.272 1.272 29 H -0.288 1.288 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.230 0.770 40 H 0.219 0.781 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.018 0.982 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.015 0.985 47 H 0.076 0.924 48 H 0.021 0.979 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 20.882 -10.152 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.166 5.166 3 C -0.021 4.021 4 N -0.161 5.161 5 C -0.091 4.091 6 C -0.137 4.137 7 C -0.161 4.161 8 C 0.051 3.949 9 H 0.139 0.861 10 N -0.076 5.076 11 C -0.184 4.184 12 C -0.220 4.220 13 N -0.177 5.177 14 N -0.108 5.108 15 C -0.053 4.053 16 N -0.212 5.212 17 N -0.184 5.184 18 C -0.039 4.039 19 C 0.140 3.860 20 C -0.174 4.174 21 C -0.166 4.166 22 C -0.560 4.560 23 H 0.062 0.938 24 C -0.162 4.162 25 N -0.532 5.532 26 Si 0.775 3.225 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.214 1.214 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.247 0.753 40 H 0.236 0.764 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.235 20.827 -8.180 22.980 hybrid contribution -0.884 -0.978 -0.452 1.394 sum -6.119 19.849 -8.633 22.494 Atomic orbital electron populations 1.22487 0.73621 1.06335 1.04902 1.46032 1.09768 1.04498 1.56271 1.22606 0.86965 0.87939 1.04578 1.58550 1.18172 0.95295 1.44040 1.22766 0.96121 1.00942 0.89293 1.21588 0.96863 0.89232 1.05982 1.22094 0.95832 1.02125 0.96068 1.21766 0.82468 0.85473 1.05214 0.86108 1.47666 1.22894 1.32007 1.05052 1.24318 0.97076 1.00953 0.96028 1.24272 1.02069 1.04490 0.91217 1.75068 1.13141 1.14755 1.14714 1.78338 1.05626 1.12700 1.14094 1.22046 0.90436 0.90122 1.02647 1.74337 1.17498 1.04172 1.25155 1.73873 1.19565 1.02555 1.22391 1.25788 0.85566 0.93181 0.99341 1.16841 0.93657 0.79506 0.96001 1.21704 0.97963 1.03643 0.94137 1.21494 0.95764 1.02033 0.97276 1.20951 1.32854 0.96077 1.06159 0.93752 1.25393 0.96704 0.95641 0.98471 1.69905 1.44917 1.02458 1.35937 0.85654 0.78914 0.77839 0.80075 1.20045 1.19717 1.21401 0.88457 0.88620 0.87346 0.93100 0.88532 0.85968 0.89373 0.87797 0.88703 0.75328 0.76397 0.92462 0.91956 0.96339 0.90611 0.93381 0.96557 0.90549 0.96032 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 7.91 127.77 1.01 2.83 16 2 N -0.47 -17.23 3.21 -538.17 -1.73 -18.96 16 3 C 0.34 11.92 7.21 260.11 1.88 13.79 16 4 N -0.44 -10.64 4.70 -706.18 -3.32 -13.95 16 5 C 0.03 0.52 5.28 86.33 0.46 0.98 16 6 C -0.10 -0.65 6.09 30.65 0.19 -0.46 16 7 C -0.12 -0.86 4.98 30.68 0.15 -0.71 16 8 C 0.15 2.44 3.29 45.04 0.15 2.59 16 9 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 10 N -0.28 -5.58 3.26 -326.90 -1.06 -6.65 16 11 C -0.03 -0.46 10.68 83.49 0.89 0.43 16 12 C -0.06 -1.12 12.05 83.73 1.01 -0.11 16 13 N -0.31 -8.53 12.41 -58.26 -0.72 -9.25 16 14 N -0.13 -3.61 13.17 37.02 0.49 -3.12 16 15 C 0.08 1.80 4.49 86.32 0.39 2.19 16 16 N -0.37 -16.12 11.24 -58.01 -0.65 -16.77 16 17 N -0.35 -16.93 11.50 -49.54 -0.57 -17.50 16 18 C 0.23 10.44 6.28 137.64 0.86 11.30 16 19 C 0.14 6.73 0.52 -53.67 -0.03 6.70 16 20 C -0.12 -4.96 7.98 71.98 0.57 -4.39 16 21 C -0.11 -5.34 7.75 71.98 0.56 -4.78 16 22 C -0.52 -25.90 6.45 25.60 0.17 -25.73 16 23 H 0.04 2.27 7.41 -2.91 -0.02 2.25 16 24 C 0.04 1.94 5.15 84.66 0.44 2.37 16 25 N -0.89 -45.16 9.42 21.45 0.20 -44.96 16 26 Si 0.95 39.91 29.54 68.60 2.03 41.94 16 27 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 29 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 30 H 0.10 2.04 7.65 -2.39 -0.02 2.02 16 31 H 0.10 3.05 5.89 -2.38 -0.01 3.04 16 32 H 0.11 2.23 7.67 -2.38 -0.02 2.21 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.38 5.23 -2.39 -0.01 1.37 16 35 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.40 7.06 -2.39 -0.02 0.38 16 39 H 0.23 1.04 7.25 -2.91 -0.02 1.02 16 40 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.97 7.92 -2.39 -0.02 1.95 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 3.53 6.25 -2.39 -0.01 3.52 16 45 H 0.05 1.83 6.48 -2.38 -0.02 1.82 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 3.95 6.07 -2.39 -0.01 3.94 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -73.86 380.40 4.32 -69.54 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.97 Total: 12.67 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 8.69 Total: 7.01 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -7.36 Total: -131.16 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -73.86 4.32 -69.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647678633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.037 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds