Wall clock time and date at job start Wed Apr 1 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47271 * 2 1 4 4 C 1.52998 * 109.47280 * 240.00010 * 2 1 3 5 5 C 1.50702 * 109.47060 * 64.99770 * 4 2 1 6 6 H 1.07993 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99488 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00669 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99454 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47478 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47089 * 120.00649 * 9 7 5 12 12 H 1.48504 * 109.47358 * 240.00265 * 9 7 5 13 13 C 1.50704 * 109.46926 * 119.99943 * 2 1 3 14 14 N 1.30292 * 126.34700 * 59.95768 * 13 2 1 15 15 N 1.28528 * 110.05188 * 180.02562 * 14 13 2 16 16 C 1.31212 * 109.86189 * 0.02562 * 15 14 13 17 17 N 1.38577 * 126.47356 * 180.02562 * 16 15 14 18 18 C 1.47846 * 111.00047 * 18.65577 * 17 16 15 19 19 C 1.54906 * 104.79473 * 213.63322 * 18 17 16 20 20 C 1.55138 * 101.65556 * 37.06867 * 19 18 17 21 21 C 1.47438 * 111.00315 * 257.80713 * 17 16 15 22 22 H 1.08999 * 109.89329 * 242.66460 * 21 17 16 23 23 C 1.50700 * 109.88676 * 3.69292 * 21 17 16 24 24 N 1.30520 * 126.34928 * 56.41554 * 23 21 17 25 25 N 1.28599 * 109.67056 * 179.82505 * 24 23 21 26 26 C 1.30518 * 109.67416 * 0.44464 * 25 24 23 27 27 N 1.35490 * 107.30707 * 359.73031 * 26 25 24 28 28 C 1.46503 * 126.98056 * 179.97438 * 27 26 25 29 29 N 1.36451 * 107.05426 * 359.97438 * 16 15 14 30 30 C 1.46498 * 127.13768 * 179.74288 * 29 16 15 31 31 H 1.09003 * 109.47350 * 299.99861 * 1 2 3 32 32 H 1.09001 * 109.47127 * 60.00329 * 1 2 3 33 33 H 1.09002 * 109.47271 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47348 * 185.00341 * 4 2 1 35 35 H 1.09001 * 109.47004 * 305.00057 * 4 2 1 36 36 H 0.97004 * 120.00355 * 180.02562 * 8 7 5 37 37 H 1.09004 * 110.36951 * 332.45929 * 18 17 16 38 38 H 1.08993 * 110.37786 * 94.80562 * 18 17 16 39 39 H 1.08994 * 110.99096 * 278.97471 * 19 18 17 40 40 H 1.09004 * 111.02316 * 155.17147 * 19 18 17 41 41 H 1.08993 * 110.70937 * 205.96263 * 20 19 18 42 42 H 1.09004 * 110.85954 * 82.79729 * 20 19 18 43 43 H 1.08000 * 126.34406 * 179.72864 * 26 25 24 44 44 H 1.08995 * 109.47094 * 270.00360 * 28 27 26 45 45 H 1.09003 * 109.46911 * 30.00309 * 28 27 26 46 46 H 1.08997 * 109.47051 * 149.99958 * 28 27 26 47 47 H 1.08997 * 109.47657 * 90.02210 * 30 29 16 48 48 H 1.09003 * 109.47226 * 210.02206 * 30 29 16 49 49 H 1.09000 * 109.47140 * 330.01510 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5187 -3.8511 9 14 1.4997 0.5633 -5.2495 10 1 0.7431 1.7749 -4.8434 11 1 2.7181 0.9681 -5.9959 12 1 0.6459 -0.2855 -6.1189 13 6 2.0323 -0.7104 1.2305 14 7 1.7943 -1.9487 1.5585 15 7 2.3753 -2.2297 2.6700 16 6 3.0199 -1.1769 3.1147 17 7 3.7627 -1.0980 4.2818 18 6 4.1266 -2.4452 4.7704 19 6 4.1236 -2.3202 6.3144 20 6 2.9282 -1.3595 6.5487 21 6 3.0100 -0.4018 5.3413 22 1 3.5312 0.5118 5.6274 23 6 1.6242 -0.0693 4.8516 24 7 0.7444 -0.9141 4.3870 25 7 -0.3307 -0.2862 4.0649 26 6 -0.1822 0.9889 4.3006 27 7 1.0625 1.1630 4.8066 28 6 1.6767 2.4270 5.2205 29 7 2.8215 -0.1746 2.2102 30 6 3.3408 1.1935 2.2780 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1263 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 2.9244 -1.8413 -4.7317 37 1 3.3873 -3.1783 4.4475 38 1 5.1185 -2.7229 4.4141 39 1 5.0542 -1.8800 6.6723 40 1 3.9452 -3.2873 6.7846 41 1 3.0508 -0.8125 7.4835 42 1 1.9848 -1.9055 6.5442 43 1 -0.9157 1.7619 4.1249 44 1 2.1968 2.8729 4.3727 45 1 0.9026 3.1093 5.5716 46 1 2.3877 2.2392 6.0250 47 1 4.3113 1.2388 1.7839 48 1 2.6472 1.8706 1.7793 49 1 3.4502 1.4893 3.3214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647688381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:01 Heat of formation + Delta-G solvation = 184.017144 kcal Electronic energy + Delta-G solvation = -32631.416154 eV Core-core repulsion = 28632.445937 eV Total energy + Delta-G solvation = -3998.970217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.44980 -42.27117 -39.23678 -35.40121 -35.17007 -34.42389 -32.52052 -31.74985 -31.70512 -28.56563 -27.96846 -27.89786 -27.20241 -26.82456 -24.00858 -23.40491 -22.53846 -22.24375 -21.56298 -21.11931 -19.78027 -18.89130 -17.75209 -17.00195 -16.70899 -16.44016 -16.28566 -15.76617 -15.41922 -15.06094 -14.55670 -14.47859 -14.11365 -13.94615 -13.64231 -13.33989 -13.19719 -13.16618 -12.97412 -12.82286 -12.47417 -12.24714 -11.97387 -11.67550 -11.48912 -11.46583 -11.18530 -11.11205 -10.89841 -10.86638 -10.58338 -10.42393 -10.39386 -10.34430 -10.28780 -9.90809 -9.61480 -9.57019 -9.33047 -9.04766 -8.95167 -8.32639 -7.91214 -5.95803 -3.99264 1.56834 2.16591 2.29333 2.62176 2.90015 3.32735 3.40298 3.42882 3.53081 3.73674 3.89739 4.13164 4.29527 4.32621 4.45768 4.47327 4.54156 4.58042 4.74326 4.83934 4.89529 5.06653 5.10837 5.16556 5.30181 5.37976 5.39695 5.44084 5.50544 5.56630 5.60033 5.67793 5.76881 5.81760 6.00206 6.06696 6.15813 6.23295 6.28538 6.41330 6.56974 6.63372 6.78751 6.95001 7.02052 7.17099 7.55983 7.68760 7.86012 8.04840 8.40378 8.70235 9.06563 9.46371 9.63866 11.15321 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003446 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.772563 B = 8122.757547 C = 8885.085730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.001 3.999 3 H 0.064 0.936 4 C 0.039 3.961 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.216 3.784 14 N -0.273 5.273 15 N -0.283 5.283 16 C 0.321 3.679 17 N -0.436 5.436 18 C 0.050 3.950 19 C -0.124 4.124 20 C -0.128 4.128 21 C 0.165 3.835 22 H 0.102 0.898 23 C 0.143 3.857 24 N -0.248 5.248 25 N -0.281 5.281 26 C 0.146 3.854 27 N -0.474 5.474 28 C 0.069 3.931 29 N -0.481 5.481 30 C 0.086 3.914 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.032 0.968 36 H 0.260 0.740 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.216 0.784 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 10.651 25.678 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.020 4.020 3 H 0.083 0.917 4 C 0.001 3.999 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C -0.050 4.050 14 N -0.111 5.111 15 N -0.127 5.127 16 C -0.035 4.035 17 N -0.160 5.160 18 C -0.077 4.077 19 C -0.162 4.162 20 C -0.167 4.167 21 C 0.055 3.945 22 H 0.120 0.880 23 C -0.124 4.124 24 N -0.089 5.089 25 N -0.120 5.120 26 C -0.140 4.140 27 N -0.166 5.166 28 C -0.074 4.074 29 N -0.176 5.176 30 C -0.058 4.058 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.232 0.768 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.193 8.121 24.933 26.313 hybrid contribution 0.320 3.080 -0.328 3.114 sum 2.513 11.201 24.604 27.151 Atomic orbital electron populations 1.21612 0.93539 1.02575 1.00079 1.19917 0.96221 0.97105 0.88762 0.91736 1.19090 0.96034 0.96312 0.88426 1.21175 1.35346 1.08402 0.90779 0.92430 1.24999 0.95204 0.95023 0.99031 1.69994 1.38495 1.20975 1.23379 0.86568 0.78219 0.80058 0.83315 1.19767 1.21143 1.20945 1.25473 0.94383 0.92061 0.93119 1.74017 1.19117 1.10917 1.07097 1.74414 1.08964 1.22407 1.06892 1.21951 1.00897 0.87360 0.93307 1.60695 1.35339 1.20630 0.99368 1.23138 1.02889 0.87899 0.93746 1.22702 0.97969 1.00151 0.95412 1.22833 1.00727 0.97107 0.96064 1.20984 0.83379 0.98832 0.91339 0.88018 1.25086 0.99708 0.81907 1.05740 1.74523 0.96669 1.25232 1.12434 1.74408 1.17511 1.02216 1.17911 1.26483 0.87469 0.98452 1.01635 1.46172 1.13651 1.08644 1.48172 1.22144 1.00104 0.83271 1.01903 1.46023 1.41317 1.11548 1.18699 1.21848 1.00782 0.80509 1.02617 0.95251 0.91072 0.92013 0.96932 0.94937 0.93009 0.89322 0.89142 0.90301 0.89563 0.90078 0.89645 0.76802 0.89984 0.88713 0.89179 0.90152 0.89909 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.98 37.16 0.33 -2.14 16 2 C 0.00 0.02 2.70 -91.77 -0.25 -0.22 16 3 H 0.06 1.29 6.94 -51.93 -0.36 0.93 16 4 C 0.04 1.06 4.43 -27.88 -0.12 0.94 16 5 C -0.52 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.22 4.59 6.58 -154.02 -1.01 3.58 16 14 N -0.27 -6.48 12.18 32.99 0.40 -6.07 16 15 N -0.28 -6.05 9.79 30.31 0.30 -5.76 16 16 C 0.32 5.58 4.47 -318.89 -1.43 4.16 16 17 N -0.44 -5.70 5.20 -165.12 -0.86 -6.56 16 18 C 0.05 0.59 6.61 -2.30 -0.02 0.57 16 19 C -0.12 -0.96 7.08 -24.59 -0.17 -1.14 16 20 C -0.13 -1.08 6.46 -24.91 -0.16 -1.24 16 21 C 0.17 1.68 3.36 -67.88 -0.23 1.45 16 22 H 0.10 0.73 6.95 -51.93 -0.36 0.37 16 23 C 0.14 1.79 4.51 -154.98 -0.70 1.09 16 24 N -0.25 -4.21 9.88 32.80 0.32 -3.88 16 25 N -0.28 -4.69 12.21 29.69 0.36 -4.32 16 26 C 0.15 1.68 12.74 -89.95 -1.15 0.54 16 27 N -0.47 -4.48 3.15 -122.69 -0.39 -4.87 16 28 C 0.07 0.28 10.56 59.85 0.63 0.91 16 29 N -0.48 -8.33 2.79 -121.46 -0.34 -8.67 16 30 C 0.09 1.07 10.73 59.85 0.64 1.71 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 1.31 6.79 -51.93 -0.35 0.95 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.93 7.77 -51.93 -0.40 0.53 16 43 H 0.22 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.08 0.28 7.29 -51.93 -0.38 -0.10 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.22 7.23 -51.93 -0.38 -0.16 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 0.96 7.22 -51.93 -0.38 0.58 16 49 H 0.07 0.68 6.25 -51.93 -0.32 0.35 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -39.35 390.64 -10.06 -49.41 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.45 Total: -2.21 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -4.01 Total: -3.00 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: 0.54 Total: -66.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.35 -10.06 -49.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647688381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.423 kcal (2) G-P(sol) polarization free energy of solvation -39.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds