Wall clock time and date at job start Wed Apr 1 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47271 * 2 1 4 4 C 1.52998 * 109.47280 * 240.00010 * 2 1 3 5 5 C 1.50702 * 109.47060 * 64.99770 * 4 2 1 6 6 H 1.07993 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99488 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00669 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99454 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47478 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47089 * 120.00649 * 9 7 5 12 12 H 1.48504 * 109.47358 * 240.00265 * 9 7 5 13 13 C 1.50704 * 109.46926 * 119.99943 * 2 1 3 14 14 N 1.30292 * 126.34700 * 59.95768 * 13 2 1 15 15 N 1.28528 * 110.05188 * 180.02562 * 14 13 2 16 16 C 1.31212 * 109.86189 * 0.02562 * 15 14 13 17 17 N 1.38577 * 126.47356 * 180.02562 * 16 15 14 18 18 C 1.47846 * 111.00047 * 18.65577 * 17 16 15 19 19 C 1.54906 * 104.79473 * 213.63322 * 18 17 16 20 20 C 1.55138 * 101.65556 * 37.06867 * 19 18 17 21 21 C 1.47438 * 111.00315 * 257.80713 * 17 16 15 22 22 H 1.08999 * 109.89329 * 242.66460 * 21 17 16 23 23 C 1.50700 * 109.88676 * 3.69292 * 21 17 16 24 24 N 1.30520 * 126.34928 * 56.41554 * 23 21 17 25 25 N 1.28599 * 109.67056 * 179.82505 * 24 23 21 26 26 C 1.30518 * 109.67416 * 0.44464 * 25 24 23 27 27 N 1.35490 * 107.30707 * 359.73031 * 26 25 24 28 28 C 1.46503 * 126.98056 * 179.97438 * 27 26 25 29 29 N 1.36451 * 107.05426 * 359.97438 * 16 15 14 30 30 C 1.46498 * 127.13768 * 179.74288 * 29 16 15 31 31 H 1.09003 * 109.47350 * 299.99861 * 1 2 3 32 32 H 1.09001 * 109.47127 * 60.00329 * 1 2 3 33 33 H 1.09002 * 109.47271 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47348 * 185.00341 * 4 2 1 35 35 H 1.09001 * 109.47004 * 305.00057 * 4 2 1 36 36 H 0.97004 * 120.00355 * 180.02562 * 8 7 5 37 37 H 1.09004 * 110.36951 * 332.45929 * 18 17 16 38 38 H 1.08993 * 110.37786 * 94.80562 * 18 17 16 39 39 H 1.08994 * 110.99096 * 278.97471 * 19 18 17 40 40 H 1.09004 * 111.02316 * 155.17147 * 19 18 17 41 41 H 1.08993 * 110.70937 * 205.96263 * 20 19 18 42 42 H 1.09004 * 110.85954 * 82.79729 * 20 19 18 43 43 H 1.08000 * 126.34406 * 179.72864 * 26 25 24 44 44 H 1.08995 * 109.47094 * 270.00360 * 28 27 26 45 45 H 1.09003 * 109.46911 * 30.00309 * 28 27 26 46 46 H 1.08997 * 109.47051 * 149.99958 * 28 27 26 47 47 H 1.08997 * 109.47657 * 90.02210 * 30 29 16 48 48 H 1.09003 * 109.47226 * 210.02206 * 30 29 16 49 49 H 1.09000 * 109.47140 * 330.01510 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5187 -3.8511 9 14 1.4997 0.5633 -5.2495 10 1 0.7431 1.7749 -4.8434 11 1 2.7181 0.9681 -5.9959 12 1 0.6459 -0.2855 -6.1189 13 6 2.0323 -0.7104 1.2305 14 7 1.7943 -1.9487 1.5585 15 7 2.3753 -2.2297 2.6700 16 6 3.0199 -1.1769 3.1147 17 7 3.7627 -1.0980 4.2818 18 6 4.1266 -2.4452 4.7704 19 6 4.1236 -2.3202 6.3144 20 6 2.9282 -1.3595 6.5487 21 6 3.0100 -0.4018 5.3413 22 1 3.5312 0.5118 5.6274 23 6 1.6242 -0.0693 4.8516 24 7 0.7444 -0.9141 4.3870 25 7 -0.3307 -0.2862 4.0649 26 6 -0.1822 0.9889 4.3006 27 7 1.0625 1.1630 4.8066 28 6 1.6767 2.4270 5.2205 29 7 2.8215 -0.1746 2.2102 30 6 3.3408 1.1935 2.2780 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1263 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 2.9244 -1.8413 -4.7317 37 1 3.3873 -3.1783 4.4475 38 1 5.1185 -2.7229 4.4141 39 1 5.0542 -1.8800 6.6723 40 1 3.9452 -3.2873 6.7846 41 1 3.0508 -0.8125 7.4835 42 1 1.9848 -1.9055 6.5442 43 1 -0.9157 1.7619 4.1249 44 1 2.1968 2.8729 4.3727 45 1 0.9026 3.1093 5.5716 46 1 2.3877 2.2392 6.0250 47 1 4.3113 1.2388 1.7839 48 1 2.6472 1.8706 1.7793 49 1 3.4502 1.4893 3.3214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647688381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:00 Heat of formation + Delta-G solvation = 157.983060 kcal Electronic energy + Delta-G solvation = -32632.545077 eV Core-core repulsion = 28632.445937 eV Total energy + Delta-G solvation = -4000.099140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.43742 -43.58307 -40.18202 -37.09469 -36.09625 -35.73025 -34.37550 -33.02540 -32.58342 -29.68514 -29.31633 -28.72580 -28.53857 -28.20003 -25.91428 -24.38737 -23.84665 -23.23302 -22.81652 -22.11940 -20.88182 -20.39243 -18.71167 -18.58228 -17.92984 -17.62413 -17.20067 -16.94081 -16.66295 -16.39075 -15.83118 -15.75549 -15.25880 -15.06681 -14.64234 -14.61744 -14.40214 -14.04070 -13.96968 -13.87258 -13.69378 -13.50612 -13.26967 -12.97674 -12.81280 -12.69255 -12.65888 -12.41775 -12.36843 -12.24929 -12.16917 -12.02303 -11.70724 -11.50729 -11.48710 -11.21522 -11.18279 -11.06797 -10.93421 -10.57571 -10.56105 -10.10111 -9.35410 -8.17410 -6.30129 0.74168 0.90472 1.35629 1.41935 1.43662 1.56173 1.57107 1.94239 2.04748 2.42479 2.71759 3.03922 3.16210 3.51345 3.55134 3.59159 3.67228 3.76990 3.87028 3.93642 4.00052 4.15218 4.19162 4.32468 4.34785 4.40420 4.41930 4.47593 4.53640 4.55891 4.65760 4.68874 4.83284 4.86282 4.89516 5.00563 5.04185 5.05713 5.10798 5.15602 5.17480 5.30542 5.34170 5.42427 5.48093 5.60180 5.68376 5.81459 5.96764 6.17858 6.28314 6.85516 7.39215 7.80111 7.96549 8.95530 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003446 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.772563 B = 8122.757547 C = 8885.085730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.014 3.986 3 H 0.089 0.911 4 C 0.054 3.946 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.970 3.030 10 H -0.252 1.252 11 H -0.279 1.279 12 H -0.284 1.284 13 C 0.199 3.801 14 N -0.324 5.324 15 N -0.329 5.329 16 C 0.349 3.651 17 N -0.430 5.430 18 C 0.040 3.960 19 C -0.108 4.108 20 C -0.122 4.122 21 C 0.161 3.839 22 H 0.148 0.852 23 C 0.142 3.858 24 N -0.307 5.307 25 N -0.348 5.348 26 C 0.157 3.843 27 N -0.463 5.463 28 C 0.055 3.945 29 N -0.477 5.477 30 C 0.075 3.925 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.030 0.970 34 H -0.023 1.023 35 H -0.016 1.016 36 H 0.262 0.738 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.052 0.948 43 H 0.251 0.749 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 15.302 28.042 32.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 H 0.107 0.893 4 C 0.016 3.984 5 C -0.566 4.566 6 H 0.094 0.906 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.794 3.206 10 H -0.175 1.175 11 H -0.205 1.205 12 H -0.210 1.210 13 C -0.069 4.069 14 N -0.162 5.162 15 N -0.172 5.172 16 C -0.008 4.008 17 N -0.156 5.156 18 C -0.087 4.087 19 C -0.146 4.146 20 C -0.162 4.162 21 C 0.052 3.948 22 H 0.166 0.834 23 C -0.127 4.127 24 N -0.147 5.147 25 N -0.187 5.187 26 C -0.131 4.131 27 N -0.154 5.154 28 C -0.085 4.085 29 N -0.171 5.171 30 C -0.067 4.067 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.049 0.951 34 H -0.005 1.005 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.071 0.929 43 H 0.267 0.733 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.104 0.896 48 H 0.112 0.888 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.276 12.819 27.334 30.368 hybrid contribution 0.055 1.644 -0.911 1.881 sum 3.331 14.464 26.423 30.306 Atomic orbital electron populations 1.21445 0.92759 1.00918 1.01203 1.19626 0.96736 0.97429 0.86862 0.89282 1.18805 0.93420 0.94646 0.91557 1.21580 1.35035 1.08851 0.91140 0.90571 1.26058 0.94977 0.95986 1.03030 1.70173 1.40092 1.23183 1.24345 0.85333 0.78040 0.78907 0.78354 1.17495 1.20502 1.20991 1.25085 0.95990 0.91897 0.93950 1.73875 1.20867 1.12834 1.08638 1.74307 1.11106 1.24802 1.06973 1.22322 0.98387 0.86188 0.93860 1.60957 1.34574 1.21268 0.98790 1.23234 1.01715 0.86609 0.97093 1.22703 0.99184 1.00931 0.91733 1.22842 0.99338 0.96924 0.97059 1.21415 0.82427 1.00554 0.90448 0.83440 1.25357 0.99943 0.82666 1.04781 1.74398 0.97912 1.27679 1.14699 1.74268 1.18767 1.04879 1.20782 1.27102 0.88640 0.97715 0.99685 1.46386 1.12782 1.09380 1.46856 1.22661 1.01482 0.81185 1.03220 1.46116 1.40380 1.13170 1.17410 1.22269 1.01064 0.77982 1.05349 0.92888 0.90822 0.95103 1.00501 0.99775 0.92940 0.93269 0.88711 0.87069 0.88725 0.86016 0.92917 0.73297 0.88719 0.86141 0.86793 0.89614 0.88756 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.98 71.98 0.65 -3.79 16 2 C 0.01 0.64 2.70 -11.54 -0.03 0.61 16 3 H 0.09 3.48 6.94 -2.39 -0.02 3.47 16 4 C 0.05 3.06 4.43 29.85 0.13 3.19 16 5 C -0.53 -30.03 8.41 25.60 0.22 -29.81 16 6 H 0.08 3.97 7.06 -2.91 -0.02 3.95 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -59.77 13.29 21.45 0.28 -59.48 16 9 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 10 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.20 8.81 6.58 137.64 0.91 9.72 16 14 N -0.32 -16.52 12.18 -49.54 -0.60 -17.12 16 15 N -0.33 -15.02 9.79 -58.01 -0.57 -15.59 16 16 C 0.35 12.32 4.47 260.12 1.16 13.48 16 17 N -0.43 -10.60 5.20 -676.33 -3.52 -14.12 16 18 C 0.04 0.93 6.61 86.77 0.57 1.51 16 19 C -0.11 -1.38 7.08 31.98 0.23 -1.15 16 20 C -0.12 -1.71 6.46 31.78 0.21 -1.50 16 21 C 0.16 2.75 3.36 44.52 0.15 2.90 16 22 H 0.15 1.20 6.95 -2.39 -0.02 1.18 16 23 C 0.14 3.29 4.51 137.98 0.62 3.91 16 24 N -0.31 -10.65 9.88 -50.15 -0.50 -11.15 16 25 N -0.35 -11.82 12.21 -59.99 -0.73 -12.55 16 26 C 0.16 3.32 12.74 180.11 2.30 5.61 16 27 N -0.46 -7.23 3.15 -542.08 -1.71 -8.94 16 28 C 0.05 0.14 10.56 127.77 1.35 1.49 16 29 N -0.48 -16.35 2.79 -538.20 -1.50 -17.85 16 30 C 0.08 1.64 10.73 127.77 1.37 3.01 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 3.01 6.95 -2.39 -0.02 2.99 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 35 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.05 1.56 6.79 -2.38 -0.02 1.54 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.08 16 41 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 1.12 7.77 -2.38 -0.02 1.10 16 43 H 0.25 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.09 0.08 7.29 -2.39 -0.02 0.06 16 45 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.11 -0.20 7.23 -2.39 -0.02 -0.22 16 47 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.09 1.86 7.22 -2.39 -0.02 1.84 16 49 H 0.11 1.53 6.25 -2.39 -0.01 1.51 16 Total: -1.00 -97.03 390.64 4.43 -92.59 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.96 Total: 8.22 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 10.28 Total: 9.46 kcal Atomic # 7 Polarization: -147.97 SS G_CDS: -8.84 Total: -156.80 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -97.03 4.43 -92.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647688381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.576 kcal (2) G-P(sol) polarization free energy of solvation -97.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds