Wall clock time and date at job start Wed Apr 1 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.46949 * 2 1 4 4 C 1.36736 * 127.13491 * 264.19527 * 3 2 1 5 5 C 1.50707 * 126.34780 * 359.96410 * 4 3 2 6 6 C 1.50700 * 109.46733 * 90.00422 * 5 4 3 7 7 N 1.30720 * 125.52265 * 269.69111 * 6 5 4 8 8 N 1.40446 * 106.79122 * 179.86309 * 7 6 5 9 9 H 0.97001 * 126.82434 * 180.15688 * 8 7 6 10 10 C 1.34430 * 106.34879 * 0.40103 * 8 7 6 11 11 C 1.50711 * 125.95754 * 179.73978 * 10 8 7 12 12 N 1.30824 * 108.08167 * 359.75735 * 10 8 7 13 13 N 1.30298 * 107.30470 * 179.83619 * 4 3 2 14 14 N 1.28526 * 110.05058 * 0.44352 * 13 4 3 15 15 C 1.31221 * 109.86395 * 359.71697 * 14 13 4 16 16 N 1.38582 * 126.47709 * 179.97438 * 15 14 13 17 17 C 1.46840 * 110.99737 * 271.12363 * 16 15 14 18 18 C 1.53039 * 109.52023 * 185.84184 * 17 16 15 19 19 C 1.53126 * 109.27620 * 300.81317 * 18 17 16 20 20 C 1.53121 * 109.15584 * 57.65683 * 19 18 17 21 21 H 1.08995 * 109.49964 * 62.29068 * 20 19 18 22 22 C 1.50704 * 109.49819 * 182.40595 * 20 19 18 23 23 H 1.07999 * 120.00170 * 119.80851 * 22 20 19 24 24 C 1.37875 * 119.99904 * 299.79960 * 22 20 19 25 25 N 1.31515 * 120.00325 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00075 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46802 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47334 * 120.00107 * 26 24 22 29 29 H 1.48508 * 109.46995 * 240.00562 * 26 24 22 30 30 C 1.46847 * 110.99788 * 35.32632 * 16 15 14 31 31 H 1.09002 * 109.47236 * 300.00492 * 1 2 3 32 32 H 1.08997 * 109.46972 * 60.00166 * 1 2 3 33 33 H 1.08996 * 109.47117 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46972 * 119.99834 * 2 1 3 35 35 H 1.08996 * 109.47341 * 240.00408 * 2 1 3 36 36 H 1.08995 * 109.46668 * 210.00066 * 5 4 3 37 37 H 1.08996 * 109.46921 * 330.00391 * 5 4 3 38 38 H 1.08998 * 109.46721 * 269.99993 * 11 10 8 39 39 H 1.08995 * 109.46705 * 29.99308 * 11 10 8 40 40 H 1.08999 * 109.47218 * 149.99595 * 11 10 8 41 41 H 1.09009 * 109.46296 * 305.84662 * 17 16 15 42 42 H 1.08993 * 109.47047 * 65.82289 * 17 16 15 43 43 H 1.09002 * 109.50504 * 180.87777 * 18 17 16 44 44 H 1.08993 * 109.54271 * 60.77948 * 18 17 16 45 45 H 1.08997 * 109.52366 * 297.75081 * 19 18 17 46 46 H 1.08994 * 109.57675 * 177.59493 * 19 18 17 47 47 H 0.97002 * 120.00538 * 179.97438 * 25 24 22 48 48 H 1.08993 * 109.46860 * 294.18338 * 30 16 15 49 49 H 1.09009 * 109.45966 * 54.15998 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3974 2.1228 -1.0845 5 6 2.3931 1.6699 -2.5219 6 6 1.0588 1.9895 -3.1452 7 7 0.0195 1.1968 -3.1633 8 7 -1.0037 1.8845 -3.8361 9 1 -1.9020 1.5634 -4.0118 10 6 -0.4890 3.0739 -4.1930 11 6 -1.2117 4.1607 -4.9467 12 7 0.7488 3.1235 -3.7722 13 7 2.7604 3.2945 -0.6451 14 7 2.6462 3.3402 0.6343 15 6 2.1948 2.1926 1.0828 16 7 1.9450 1.8662 2.4063 17 6 3.1444 1.3117 3.0468 18 6 2.7947 0.8295 4.4565 19 6 2.2546 2.0063 5.2739 20 6 1.0350 2.5960 4.5602 21 1 0.2485 1.8437 4.5019 22 6 0.5327 3.7918 5.3276 23 1 0.5019 4.7626 4.8552 24 6 0.1121 3.6465 6.6325 25 7 0.1498 2.4645 7.2079 26 14 -0.5112 5.1286 7.5835 27 1 -0.4536 6.3329 6.7166 28 1 -1.9146 4.8907 8.0068 29 1 0.3386 5.3403 8.7829 30 6 1.4358 3.0270 3.1476 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5137 -0.8900 36 1 3.1823 2.1866 -3.0679 37 1 2.5658 0.5946 -2.5645 38 1 -1.0670 4.0179 -6.0176 39 1 -2.2758 4.1175 -4.7149 40 1 -0.8148 5.1324 -4.6528 41 1 3.5159 0.4730 2.4579 42 1 3.9132 2.0820 3.1068 43 1 3.6886 0.4322 4.9375 44 1 2.0362 0.0490 4.3971 45 1 3.0267 2.7699 5.3671 46 1 1.9640 1.6594 6.2654 47 1 -0.1457 2.3623 8.1261 48 1 2.2125 3.7893 3.2070 49 1 0.5660 3.4342 2.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647704651.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:15 Heat of formation + Delta-G solvation = 164.171116 kcal Electronic energy + Delta-G solvation = -30959.854356 eV Core-core repulsion = 26960.023550 eV Total energy + Delta-G solvation = -3999.830805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.81452 -42.34659 -38.30031 -35.64019 -34.54791 -33.66020 -32.67387 -32.01359 -31.02500 -30.25389 -29.89480 -28.43483 -27.08807 -25.02148 -24.26083 -23.49267 -22.25837 -21.57979 -21.22610 -20.63367 -20.08249 -18.57598 -18.17935 -17.26390 -16.51335 -16.03275 -15.91634 -15.61700 -14.83081 -14.77034 -14.54214 -14.21594 -13.99712 -13.89049 -13.52414 -13.22269 -13.17859 -12.98124 -12.85770 -12.80103 -12.52916 -12.41804 -12.26033 -12.03407 -11.84973 -11.29555 -11.15924 -10.96079 -10.79540 -10.69204 -10.42755 -10.28851 -10.25624 -10.18815 -9.94360 -9.90903 -9.74967 -9.54951 -9.22193 -9.06065 -8.69778 -8.33849 -7.97742 -5.99573 -4.04941 1.24016 1.87005 2.32522 2.39786 2.64084 3.09657 3.31082 3.39163 3.44675 3.68498 4.13200 4.22704 4.36605 4.46050 4.47592 4.60075 4.76578 4.97930 4.99996 5.12646 5.21912 5.30058 5.30667 5.34655 5.39864 5.54966 5.62766 5.69451 5.74846 5.87348 5.90543 5.95663 6.06884 6.10913 6.19344 6.29094 6.40670 6.42927 6.56671 6.69510 6.72271 6.81420 6.91523 7.07802 7.31584 7.41527 7.73995 7.77368 7.80861 8.01291 8.11669 8.43728 8.98494 9.03784 9.59635 11.06811 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.002811 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.664957 B = 9957.780763 C =10852.662479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.465 5.465 4 C 0.160 3.840 5 C 0.070 3.930 6 C 0.236 3.764 7 N -0.307 5.307 8 N -0.483 5.483 9 H 0.440 0.560 10 C 0.284 3.716 11 C -0.078 4.078 12 N -0.522 5.522 13 N -0.267 5.267 14 N -0.317 5.317 15 C 0.373 3.627 16 N -0.464 5.464 17 C 0.072 3.928 18 C -0.115 4.115 19 C -0.113 4.113 20 C 0.056 3.944 21 H 0.034 0.966 22 C -0.512 4.512 23 H 0.057 0.943 24 C 0.064 3.936 25 N -0.889 5.889 26 Si 0.891 3.109 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.284 1.284 30 C 0.084 3.916 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.259 0.741 48 H 0.044 0.956 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -7.353 -23.261 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.160 5.160 4 C -0.108 4.108 5 C 0.028 3.972 6 C -0.047 4.047 7 N -0.137 5.137 8 N -0.201 5.201 9 H 0.285 0.715 10 C 0.005 3.995 11 C -0.137 4.137 12 N -0.251 5.251 13 N -0.108 5.108 14 N -0.162 5.162 15 C 0.017 3.983 16 N -0.190 5.190 17 C -0.055 4.055 18 C -0.153 4.153 19 C -0.152 4.152 20 C 0.038 3.962 21 H 0.053 0.947 22 C -0.551 4.551 23 H 0.075 0.925 24 C -0.138 4.138 25 N -0.528 5.528 26 Si 0.719 3.281 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.210 1.210 30 C -0.042 4.042 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.202 -6.826 -22.779 23.781 hybrid contribution -1.149 -0.190 0.433 1.243 sum -1.351 -7.017 -22.346 23.460 Atomic orbital electron populations 1.22124 0.93590 1.03058 1.03840 1.21770 0.96423 0.78699 1.04015 1.46375 1.49334 1.14013 1.06236 1.23970 1.05974 0.90379 0.90504 1.18021 0.90864 1.02524 0.85830 1.23761 0.95803 0.88449 0.96732 1.77934 0.96983 1.20206 1.18561 1.47976 1.14375 1.13230 1.44524 0.71458 1.24457 0.90492 0.88581 0.95928 1.20415 0.99011 0.95098 0.99225 1.70394 1.12670 1.23933 1.18138 1.74016 1.17770 1.15422 1.03615 1.74743 1.19322 1.19089 1.03014 1.22809 0.98871 0.87344 0.89287 1.58965 1.30451 1.34593 0.95002 1.22136 0.89168 0.97933 0.96270 1.21705 1.00215 1.00412 0.92989 1.21704 0.97510 0.94415 1.01523 1.18717 0.93940 0.96439 0.87154 0.94742 1.21139 1.42121 0.94538 0.97275 0.92510 1.24912 0.95526 0.95769 0.97553 1.69890 1.47706 1.22002 1.13235 0.86545 0.78420 0.83196 0.79924 1.19716 1.21090 1.21019 1.22383 0.98216 0.87732 0.95843 0.91169 0.91384 0.90794 0.88604 0.89336 0.85546 0.87759 0.88923 0.89847 0.88103 0.92477 0.93953 0.92655 0.91871 0.94580 0.88691 0.93089 0.93724 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.33 6.79 -4.04 -0.03 1.30 16 3 N -0.47 -7.18 2.81 -114.08 -0.32 -7.50 16 4 C 0.16 2.47 7.30 -154.01 -1.12 1.35 16 5 C 0.07 0.79 6.20 -29.03 -0.18 0.61 16 6 C 0.24 2.96 7.38 -156.85 -1.16 1.81 16 7 N -0.31 -3.55 11.36 32.42 0.37 -3.18 16 8 N -0.48 -4.22 7.45 32.62 0.24 -3.98 16 9 H 0.44 2.20 8.96 -182.33 -1.63 0.57 16 10 C 0.28 2.68 8.24 -155.69 -1.28 1.40 16 11 C -0.08 -0.38 10.51 36.01 0.38 0.00 16 12 N -0.52 -6.75 11.19 -8.16 -0.09 -6.84 16 13 N -0.27 -5.15 12.18 32.99 0.40 -4.74 16 14 N -0.32 -6.68 11.68 30.32 0.35 -6.33 16 15 C 0.37 7.07 6.72 -318.87 -2.14 4.93 16 16 N -0.46 -9.03 4.67 -174.55 -0.82 -9.84 16 17 C 0.07 1.28 5.39 -3.84 -0.02 1.25 16 18 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 19 C -0.11 -2.62 5.03 -26.60 -0.13 -2.75 16 20 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 21 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 25 N -0.89 -25.02 11.36 55.43 0.63 -24.39 16 26 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 C 0.08 1.90 4.30 -3.84 -0.02 1.88 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.87 6.65 -51.93 -0.35 0.53 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.77 7.09 -51.93 -0.37 0.41 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 0.86 7.18 -51.93 -0.37 0.48 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.88 8.10 -51.92 -0.42 0.45 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 47 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.04 1.06 8.06 -51.93 -0.42 0.64 16 49 H 0.06 1.45 8.10 -51.92 -0.42 1.03 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -35.04 397.93 -13.26 -48.29 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.92 Total: -0.14 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -6.09 Total: -3.72 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: 0.77 Total: -66.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.04 -13.26 -48.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647704651.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.462 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds