Wall clock time and date at job start Wed Apr 1 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.46949 * 2 1 4 4 C 1.36736 * 127.13491 * 264.19527 * 3 2 1 5 5 C 1.50707 * 126.34780 * 359.96410 * 4 3 2 6 6 C 1.50700 * 109.46733 * 90.00422 * 5 4 3 7 7 N 1.30720 * 125.52265 * 269.69111 * 6 5 4 8 8 N 1.40446 * 106.79122 * 179.86309 * 7 6 5 9 9 H 0.97001 * 126.82434 * 180.15688 * 8 7 6 10 10 C 1.34430 * 106.34879 * 0.40103 * 8 7 6 11 11 C 1.50711 * 125.95754 * 179.73978 * 10 8 7 12 12 N 1.30824 * 108.08167 * 359.75735 * 10 8 7 13 13 N 1.30298 * 107.30470 * 179.83619 * 4 3 2 14 14 N 1.28526 * 110.05058 * 0.44352 * 13 4 3 15 15 C 1.31221 * 109.86395 * 359.71697 * 14 13 4 16 16 N 1.38582 * 126.47709 * 179.97438 * 15 14 13 17 17 C 1.46840 * 110.99737 * 271.12363 * 16 15 14 18 18 C 1.53039 * 109.52023 * 185.84184 * 17 16 15 19 19 C 1.53126 * 109.27620 * 300.81317 * 18 17 16 20 20 C 1.53121 * 109.15584 * 57.65683 * 19 18 17 21 21 H 1.08995 * 109.49964 * 62.29068 * 20 19 18 22 22 C 1.50704 * 109.49819 * 182.40595 * 20 19 18 23 23 H 1.07999 * 120.00170 * 119.80851 * 22 20 19 24 24 C 1.37875 * 119.99904 * 299.79960 * 22 20 19 25 25 N 1.31515 * 120.00325 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00075 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46802 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47334 * 120.00107 * 26 24 22 29 29 H 1.48508 * 109.46995 * 240.00562 * 26 24 22 30 30 C 1.46847 * 110.99788 * 35.32632 * 16 15 14 31 31 H 1.09002 * 109.47236 * 300.00492 * 1 2 3 32 32 H 1.08997 * 109.46972 * 60.00166 * 1 2 3 33 33 H 1.08996 * 109.47117 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46972 * 119.99834 * 2 1 3 35 35 H 1.08996 * 109.47341 * 240.00408 * 2 1 3 36 36 H 1.08995 * 109.46668 * 210.00066 * 5 4 3 37 37 H 1.08996 * 109.46921 * 330.00391 * 5 4 3 38 38 H 1.08998 * 109.46721 * 269.99993 * 11 10 8 39 39 H 1.08995 * 109.46705 * 29.99308 * 11 10 8 40 40 H 1.08999 * 109.47218 * 149.99595 * 11 10 8 41 41 H 1.09009 * 109.46296 * 305.84662 * 17 16 15 42 42 H 1.08993 * 109.47047 * 65.82289 * 17 16 15 43 43 H 1.09002 * 109.50504 * 180.87777 * 18 17 16 44 44 H 1.08993 * 109.54271 * 60.77948 * 18 17 16 45 45 H 1.08997 * 109.52366 * 297.75081 * 19 18 17 46 46 H 1.08994 * 109.57675 * 177.59493 * 19 18 17 47 47 H 0.97002 * 120.00538 * 179.97438 * 25 24 22 48 48 H 1.08993 * 109.46860 * 294.18338 * 30 16 15 49 49 H 1.09009 * 109.45966 * 54.15998 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3974 2.1228 -1.0845 5 6 2.3931 1.6699 -2.5219 6 6 1.0588 1.9895 -3.1452 7 7 0.0195 1.1968 -3.1633 8 7 -1.0037 1.8845 -3.8361 9 1 -1.9020 1.5634 -4.0118 10 6 -0.4890 3.0739 -4.1930 11 6 -1.2117 4.1607 -4.9467 12 7 0.7488 3.1235 -3.7722 13 7 2.7604 3.2945 -0.6451 14 7 2.6462 3.3402 0.6343 15 6 2.1948 2.1926 1.0828 16 7 1.9450 1.8662 2.4063 17 6 3.1444 1.3117 3.0468 18 6 2.7947 0.8295 4.4565 19 6 2.2546 2.0063 5.2739 20 6 1.0350 2.5960 4.5602 21 1 0.2485 1.8437 4.5019 22 6 0.5327 3.7918 5.3276 23 1 0.5019 4.7626 4.8552 24 6 0.1121 3.6465 6.6325 25 7 0.1498 2.4645 7.2079 26 14 -0.5112 5.1286 7.5835 27 1 -0.4536 6.3329 6.7166 28 1 -1.9146 4.8907 8.0068 29 1 0.3386 5.3403 8.7829 30 6 1.4358 3.0270 3.1476 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5137 -0.8900 36 1 3.1823 2.1866 -3.0679 37 1 2.5658 0.5946 -2.5645 38 1 -1.0670 4.0179 -6.0176 39 1 -2.2758 4.1175 -4.7149 40 1 -0.8148 5.1324 -4.6528 41 1 3.5159 0.4730 2.4579 42 1 3.9132 2.0820 3.1068 43 1 3.6886 0.4322 4.9375 44 1 2.0362 0.0490 4.3971 45 1 3.0267 2.7699 5.3671 46 1 1.9640 1.6594 6.2654 47 1 -0.1457 2.3623 8.1261 48 1 2.2125 3.7893 3.2070 49 1 0.5660 3.4342 2.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647704651.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:14 Heat of formation + Delta-G solvation = 143.722545 kcal Electronic energy + Delta-G solvation = -30960.741073 eV Core-core repulsion = 26960.023550 eV Total energy + Delta-G solvation = -4000.717522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.11151 -43.16278 -39.96188 -36.79874 -35.93578 -35.03759 -33.64792 -33.39595 -32.09463 -31.87501 -31.26498 -29.26106 -28.16033 -27.04014 -25.65626 -24.83365 -23.40047 -23.12578 -22.14351 -21.95986 -21.13776 -20.32918 -18.91917 -18.83938 -18.04590 -17.31734 -17.15928 -16.91235 -16.50218 -15.85902 -15.71006 -15.48126 -15.30206 -14.97463 -14.73699 -14.53709 -14.44650 -14.30342 -13.96733 -13.78408 -13.63889 -13.59084 -13.45334 -13.21394 -12.89362 -12.77260 -12.74008 -12.60347 -12.45707 -12.27108 -11.94253 -11.84498 -11.71885 -11.40850 -11.20885 -11.16674 -11.09860 -11.07940 -10.82768 -10.52996 -10.42962 -10.37177 -9.54159 -8.11955 -6.24961 0.41923 0.67014 1.19812 1.38670 1.40999 1.52630 1.59082 1.70998 1.85984 2.40823 2.73084 2.99116 3.15557 3.30659 3.48248 3.65345 3.81797 3.85530 4.00596 4.05146 4.09950 4.17846 4.30946 4.38189 4.46950 4.48047 4.53514 4.56316 4.65368 4.68529 4.76740 4.78216 4.81014 4.87547 4.97827 5.02265 5.06678 5.10282 5.17320 5.19442 5.27203 5.28761 5.42438 5.59886 5.63679 5.72792 5.97125 6.10405 6.16020 6.28220 6.36190 6.83433 7.03636 7.42440 7.66692 8.93164 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.002811 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.664957 B = 9957.780763 C =10852.662479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.457 5.457 4 C 0.186 3.814 5 C 0.070 3.930 6 C 0.220 3.780 7 N -0.318 5.318 8 N -0.473 5.473 9 H 0.456 0.544 10 C 0.285 3.715 11 C -0.076 4.076 12 N -0.566 5.566 13 N -0.310 5.310 14 N -0.358 5.358 15 C 0.357 3.643 16 N -0.458 5.458 17 C 0.074 3.926 18 C -0.103 4.103 19 C -0.107 4.107 20 C 0.060 3.940 21 H 0.007 0.993 22 C -0.539 4.539 23 H 0.043 0.957 24 C 0.022 3.978 25 N -0.909 5.909 26 Si 0.952 3.048 27 H -0.274 1.274 28 H -0.277 1.277 29 H -0.276 1.276 30 C 0.106 3.894 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.031 0.969 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.263 0.737 48 H 0.026 0.974 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -9.139 -25.097 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.150 5.150 4 C -0.084 4.084 5 C 0.028 3.972 6 C -0.064 4.064 7 N -0.148 5.148 8 N -0.194 5.194 9 H 0.304 0.696 10 C 0.007 3.993 11 C -0.135 4.135 12 N -0.296 5.296 13 N -0.150 5.150 14 N -0.203 5.203 15 C -0.001 4.001 16 N -0.184 5.184 17 C -0.052 4.052 18 C -0.141 4.141 19 C -0.145 4.145 20 C 0.041 3.959 21 H 0.025 0.975 22 C -0.578 4.578 23 H 0.062 0.938 24 C -0.178 4.178 25 N -0.548 5.548 26 Si 0.778 3.222 27 H -0.199 1.199 28 H -0.203 1.203 29 H -0.202 1.202 30 C -0.021 4.021 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.433 -8.642 -24.635 26.110 hybrid contribution -1.176 0.343 0.882 1.509 sum -1.608 -8.298 -23.753 25.212 Atomic orbital electron populations 1.22054 0.93927 1.04244 1.01574 1.22182 0.96085 0.76824 1.06432 1.46560 1.48496 1.15029 1.04957 1.24717 1.02616 0.89082 0.91958 1.18314 0.91083 1.04861 0.82896 1.23880 0.96317 0.88754 0.97453 1.77824 0.97238 1.20776 1.18938 1.47942 1.14717 1.12970 1.43730 0.69550 1.25184 0.89867 0.89273 0.94986 1.20633 0.99877 0.93042 0.99957 1.70376 1.14702 1.24815 1.19705 1.73934 1.20280 1.17749 1.02995 1.74621 1.20681 1.20664 1.04296 1.22661 0.99994 0.87982 0.89455 1.58896 1.31434 1.32650 0.95389 1.22194 0.88161 0.98656 0.96185 1.21589 1.01345 0.98298 0.92882 1.21508 0.96359 0.95818 1.00803 1.18582 0.93935 0.94926 0.88422 0.97478 1.21422 1.43220 0.94940 0.98204 0.93820 1.25602 0.95546 0.98398 0.98223 1.69993 1.47817 1.23431 1.13566 0.85603 0.78166 0.79910 0.78570 1.19879 1.20289 1.20165 1.21888 0.96817 0.88468 0.94914 0.94741 0.92198 0.87869 0.87770 0.85316 0.84477 0.84069 0.86601 0.87295 0.88914 0.88820 0.95028 0.89627 0.91574 0.95749 0.91248 0.92785 0.95603 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.11 2.16 6.79 86.38 0.59 2.74 16 3 N -0.46 -13.50 2.81 -514.83 -1.45 -14.95 16 4 C 0.19 5.55 7.30 137.64 1.01 6.55 16 5 C 0.07 1.43 6.20 29.10 0.18 1.61 16 6 C 0.22 5.17 7.38 138.63 1.02 6.19 16 7 N -0.32 -6.69 11.36 -51.33 -0.58 -7.27 16 8 N -0.47 -7.36 7.45 -50.70 -0.38 -7.73 16 9 H 0.46 3.54 8.96 -213.10 -1.91 1.63 16 10 C 0.28 4.93 8.24 138.23 1.14 6.07 16 11 C -0.08 -0.57 10.51 71.24 0.75 0.18 16 12 N -0.57 -14.12 11.19 -179.72 -2.01 -16.13 16 13 N -0.31 -12.07 12.18 -49.53 -0.60 -12.67 16 14 N -0.36 -15.53 11.68 -58.00 -0.68 -16.21 16 15 C 0.36 13.61 6.72 260.11 1.75 15.36 16 16 N -0.46 -18.04 4.67 -706.17 -3.30 -21.34 16 17 C 0.07 2.57 5.39 86.33 0.47 3.03 16 18 C -0.10 -3.73 6.09 30.65 0.19 -3.54 16 19 C -0.11 -5.04 5.03 30.68 0.15 -4.89 16 20 C 0.06 3.14 2.26 -11.49 -0.03 3.11 16 21 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 22 C -0.54 -30.98 8.56 25.60 0.22 -30.76 16 23 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 24 C 0.02 1.23 5.30 84.65 0.45 1.67 16 25 N -0.91 -52.08 11.36 21.45 0.24 -51.84 16 26 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 30 C 0.11 5.05 4.30 86.32 0.37 5.42 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.43 6.65 -2.39 -0.02 1.42 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.13 1.64 7.09 -2.39 -0.02 1.63 16 36 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.14 1.76 7.18 -2.39 -0.02 1.74 16 38 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 2.59 8.10 -2.38 -0.02 2.57 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 3.64 6.16 -2.39 -0.01 3.63 16 47 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 49 H 0.04 1.99 8.10 -2.38 -0.02 1.97 16 Total: -1.00 -80.68 397.93 1.32 -79.36 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.94 Total: 12.20 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 8.99 Total: 9.94 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -8.75 Total: -148.14 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -80.68 1.32 -79.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647704651.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.081 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds