Wall clock time and date at job start Wed Apr 1 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00358 * 2 1 4 4 C 1.52999 * 109.47830 * 270.00798 * 3 2 1 5 5 C 1.52998 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47008 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47381 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47052 * 179.97438 * 8 7 6 10 10 C 1.36932 * 120.00023 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00410 * 0.02562 * 10 9 8 12 12 C 1.38811 * 120.00197 * 179.97438 * 10 9 8 13 13 N 1.31618 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00151 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47443 * 120.00001 * 14 12 10 17 17 H 1.48501 * 109.46881 * 239.99954 * 14 12 10 18 18 C 1.34780 * 119.99407 * 180.02562 * 2 1 3 19 19 O 1.21691 * 119.99329 * 184.10025 * 18 2 1 20 20 C 1.46800 * 120.00510 * 4.09962 * 18 2 1 21 21 C 1.40416 * 126.53984 * 326.04235 * 20 18 2 22 22 N 1.30975 * 108.76423 * 179.81412 * 21 20 18 23 23 N 1.39714 * 109.49004 * 0.45058 * 22 21 20 24 24 C 1.36351 * 133.19131 * 179.71196 * 23 22 21 25 25 C 1.35293 * 119.80745 * 179.97438 * 24 23 22 26 26 N 1.33245 * 121.27039 * 0.02562 * 25 24 23 27 27 C 1.31410 * 121.08134 * 359.97438 * 26 25 24 28 28 C 1.36820 * 107.96749 * 359.71102 * 23 22 21 29 29 H 1.09005 * 109.47326 * 275.01642 * 1 2 3 30 30 H 1.09005 * 109.47266 * 35.01623 * 1 2 3 31 31 H 1.08996 * 109.47884 * 155.01558 * 1 2 3 32 32 H 1.09007 * 109.46984 * 30.00384 * 3 2 1 33 33 H 1.09003 * 109.47067 * 149.99930 * 3 2 1 34 34 H 1.09007 * 109.46499 * 299.99882 * 4 3 2 35 35 H 1.08998 * 109.47058 * 59.99514 * 4 3 2 36 36 H 1.09003 * 109.46539 * 299.99299 * 5 4 3 37 37 H 1.08998 * 109.47617 * 59.99624 * 5 4 3 38 38 H 1.09007 * 109.46685 * 299.99543 * 6 5 4 39 39 H 1.09003 * 109.47679 * 59.99282 * 6 5 4 40 40 H 1.09007 * 109.46855 * 299.99460 * 7 6 5 41 41 H 1.09003 * 109.47283 * 59.99060 * 7 6 5 42 42 H 1.09003 * 109.46904 * 299.99103 * 8 7 6 43 43 H 1.08995 * 109.47448 * 59.99886 * 8 7 6 44 44 H 0.96999 * 120.00239 * 359.97438 * 9 8 7 45 45 H 0.96992 * 120.00407 * 179.97438 * 13 12 10 46 46 H 1.08001 * 125.61766 * 359.97438 * 21 20 18 47 47 H 1.08004 * 120.09312 * 0.02613 * 24 23 22 48 48 H 1.08001 * 119.36375 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.17737 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2181 3.0352 -1.4423 6 6 3.4736 3.4767 -2.8847 7 6 4.2386 4.8016 -2.8847 8 6 4.4947 5.2428 -4.3272 9 7 5.2267 6.5118 -4.3270 10 6 5.5703 7.1041 -5.5129 11 1 5.3012 6.6360 -6.4483 12 6 6.2634 8.3068 -5.5128 13 7 6.5900 8.8781 -4.3730 14 14 6.7315 9.1152 -7.1305 15 1 6.2513 8.2783 -8.2592 16 1 6.1074 10.4603 -7.2106 17 1 8.2084 9.2494 -7.2077 18 6 2.1388 -1.1673 -0.0005 19 8 3.3534 -1.1687 0.0748 20 6 1.4076 -2.4369 -0.0920 21 6 0.1428 -2.7143 0.4512 22 7 -0.1795 -3.9497 0.1592 23 7 0.8531 -4.5399 -0.5739 24 6 1.0254 -5.7818 -1.1099 25 6 2.1609 -6.0706 -1.7864 26 7 3.1233 -5.1624 -1.9421 27 6 3.0017 -3.9527 -1.4432 28 6 1.8424 -3.6086 -0.7348 29 1 -0.3634 0.0899 1.0238 30 1 -0.3634 0.8417 -0.5897 31 1 -0.3635 -0.9314 -0.4340 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1382 0.5139 34 1 3.0415 0.9508 -1.9564 35 1 1.5001 1.8409 -1.9562 36 1 2.6294 3.7950 -0.9283 37 1 4.1706 2.9044 -0.9287 38 1 4.0625 2.7167 -3.3984 39 1 2.5213 3.6073 -3.3989 40 1 3.6494 5.5614 -2.3712 41 1 5.1909 4.6714 -2.3705 42 1 5.0842 4.4830 -4.8403 43 1 3.5427 5.3730 -4.8417 44 1 5.4681 6.9324 -3.4870 45 1 7.0747 9.7183 -4.3729 46 1 -0.4653 -2.0221 1.0147 47 1 0.2573 -6.5324 -0.9955 48 1 2.2898 -7.0564 -2.2084 49 1 3.7907 -3.2278 -1.5785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691454436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:04 Heat of formation + Delta-G solvation = 89.280068 kcal Electronic energy + Delta-G solvation = -28351.490304 eV Core-core repulsion = 24316.119228 eV Total energy + Delta-G solvation = -4035.371076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.13714 -40.14054 -38.80344 -36.76575 -35.78694 -34.49736 -34.06779 -32.15417 -31.98354 -30.53876 -29.60546 -27.71436 -26.73801 -25.39955 -24.88367 -23.74002 -22.92321 -22.14464 -20.92349 -20.65191 -19.96048 -18.77711 -18.11457 -17.28839 -16.95244 -16.78518 -16.50927 -15.84840 -15.79068 -15.59430 -15.43414 -14.64478 -14.51861 -14.21695 -14.03407 -13.63141 -13.56410 -13.45755 -13.33691 -13.31579 -12.81044 -12.71516 -12.53068 -12.22089 -11.85872 -11.52091 -11.40493 -11.35485 -11.11582 -10.83709 -10.65670 -10.62135 -10.60618 -10.47158 -10.39111 -10.20931 -10.18695 -9.91404 -9.61971 -9.00667 -8.81288 -8.50312 -6.84704 -5.70725 -2.98809 -0.22640 0.19170 1.26246 1.51831 2.46144 2.64354 2.95414 3.39792 3.47095 3.52337 3.54947 3.57159 3.61636 4.08805 4.27556 4.32778 4.53792 4.61253 4.64698 4.73626 4.76352 4.80235 4.87926 4.98587 5.11693 5.21426 5.22723 5.42702 5.46460 5.51560 5.54602 5.60734 5.69160 5.77214 5.79429 5.85068 6.02800 6.05288 6.20277 6.25758 6.42422 6.42773 6.47672 6.56023 6.60549 6.96370 6.97763 6.99895 7.01932 7.75956 7.84789 8.48782 9.59437 10.19533 10.54175 11.52550 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.001452 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.321296 B =19284.895467 C =20230.518167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.115 3.885 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.237 4.237 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.595 3.405 19 O -0.535 6.535 20 C -0.271 4.271 21 C 0.108 3.892 22 N -0.303 5.303 23 N -0.247 5.247 24 C 0.064 3.936 25 C 0.030 3.970 26 N -0.441 5.441 27 C 0.167 3.833 28 C 0.092 3.908 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.209 0.791 47 H 0.184 0.816 48 H 0.189 0.811 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 -32.219 13.051 39.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.342 5.342 3 C -0.007 4.007 4 C -0.172 4.172 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.738 3.262 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.383 3.617 19 O -0.412 6.412 20 C -0.290 4.290 21 C -0.070 4.070 22 N -0.126 5.126 23 N -0.015 5.015 24 C -0.065 4.065 25 C -0.112 4.112 26 N -0.151 5.151 27 C -0.012 4.012 28 C -0.031 4.031 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.225 0.775 47 H 0.201 0.799 48 H 0.205 0.795 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.979 -33.481 12.611 40.040 hybrid contribution -0.078 1.445 -0.206 1.462 sum -18.056 -32.036 12.404 38.810 Atomic orbital electron populations 1.22175 0.79793 1.03912 1.01926 1.47632 1.06930 1.05946 1.73712 1.21608 0.97866 0.83338 0.97849 1.21956 1.00825 0.98124 0.96263 1.21522 1.00294 0.95666 0.97902 1.21492 1.00328 0.97516 0.95768 1.21727 1.00026 0.96064 0.98561 1.20663 0.94613 0.88833 0.93481 1.42405 1.67035 1.22106 1.06372 1.19317 1.28929 1.02359 0.86258 0.91168 1.24748 1.01556 0.98095 0.96849 1.69672 1.45336 1.19502 1.23867 0.86107 0.77862 0.79186 0.83011 1.20586 1.21899 1.21885 1.16951 0.86403 0.82147 0.76153 1.90830 1.13252 1.87145 1.49981 1.19728 0.98736 0.95384 1.15109 1.24472 0.93854 0.92953 0.95709 1.77720 1.07895 1.10142 1.16857 1.46198 1.12929 1.09256 1.33098 1.22702 1.01450 0.85264 0.97096 1.22517 0.88580 1.00950 0.99111 1.68288 1.28835 1.01316 1.16708 1.23277 0.94017 0.93801 0.90115 1.20357 0.92087 0.90341 1.00297 0.92112 0.90616 0.90353 0.90279 0.89359 0.91565 0.91976 0.91919 0.91680 0.92153 0.92286 0.92168 0.92091 0.96558 0.96626 0.78346 0.93627 0.77517 0.79926 0.79452 0.78956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 9.09 59.85 0.54 0.83 16 2 N -0.61 -4.84 2.87 -183.08 -0.53 -5.36 16 3 C 0.12 0.96 5.46 -4.05 -0.02 0.94 16 4 C -0.13 -1.25 5.54 -26.73 -0.15 -1.40 16 5 C -0.12 -1.24 5.21 -26.73 -0.14 -1.38 16 6 C -0.11 -1.49 5.21 -26.73 -0.14 -1.63 16 7 C -0.13 -2.12 5.33 -26.73 -0.14 -2.26 16 8 C 0.15 3.23 6.26 -4.04 -0.03 3.21 16 9 N -0.74 -19.69 5.60 -59.91 -0.34 -20.03 16 10 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 11 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 12 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 13 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 14 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 C 0.60 6.08 7.58 -12.80 -0.10 5.99 16 19 O -0.53 -7.25 16.32 5.20 0.08 -7.17 16 20 C -0.27 -2.39 5.52 -104.75 -0.58 -2.97 16 21 C 0.11 0.73 9.51 -17.10 -0.16 0.57 16 22 N -0.30 -2.47 12.60 30.76 0.39 -2.08 16 23 N -0.25 -1.97 3.91 -10.50 -0.04 -2.01 16 24 C 0.06 0.31 11.24 -16.59 -0.19 0.12 16 25 C 0.03 0.15 11.07 -17.99 -0.20 -0.05 16 26 N -0.44 -3.46 10.44 -13.26 -0.14 -3.60 16 27 C 0.17 1.43 11.20 -17.01 -0.19 1.24 16 28 C 0.09 0.83 6.77 -84.06 -0.57 0.26 16 29 H 0.06 0.15 7.84 -51.93 -0.41 -0.26 16 30 H 0.08 0.29 8.11 -51.93 -0.42 -0.14 16 31 H 0.08 0.31 4.87 -51.93 -0.25 0.06 16 32 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.09 0.88 7.37 -51.93 -0.38 0.50 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.69 7.67 -40.82 -0.31 10.38 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.21 0.65 6.22 -52.49 -0.33 0.32 16 47 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 48 H 0.19 0.21 8.06 -52.49 -0.42 -0.21 16 49 H 0.19 1.56 7.88 -52.49 -0.41 1.15 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -37.37 407.87 -8.58 -45.94 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.55 Total: 2.82 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.30 Total: -4.24 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.07 Total: -61.47 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.37 -8.58 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691454436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.224 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds