Wall clock time and date at job start Wed Apr 1 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00358 * 2 1 4 4 C 1.52999 * 109.47830 * 270.00798 * 3 2 1 5 5 C 1.52998 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47008 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47381 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47052 * 179.97438 * 8 7 6 10 10 C 1.36932 * 120.00023 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00410 * 0.02562 * 10 9 8 12 12 C 1.38811 * 120.00197 * 179.97438 * 10 9 8 13 13 N 1.31618 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00151 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47443 * 120.00001 * 14 12 10 17 17 H 1.48501 * 109.46881 * 239.99954 * 14 12 10 18 18 C 1.34780 * 119.99407 * 180.02562 * 2 1 3 19 19 O 1.21691 * 119.99329 * 184.10025 * 18 2 1 20 20 C 1.46800 * 120.00510 * 4.09962 * 18 2 1 21 21 C 1.40416 * 126.53984 * 326.04235 * 20 18 2 22 22 N 1.30975 * 108.76423 * 179.81412 * 21 20 18 23 23 N 1.39714 * 109.49004 * 0.45058 * 22 21 20 24 24 C 1.36351 * 133.19131 * 179.71196 * 23 22 21 25 25 C 1.35293 * 119.80745 * 179.97438 * 24 23 22 26 26 N 1.33245 * 121.27039 * 0.02562 * 25 24 23 27 27 C 1.31410 * 121.08134 * 359.97438 * 26 25 24 28 28 C 1.36820 * 107.96749 * 359.71102 * 23 22 21 29 29 H 1.09005 * 109.47326 * 275.01642 * 1 2 3 30 30 H 1.09005 * 109.47266 * 35.01623 * 1 2 3 31 31 H 1.08996 * 109.47884 * 155.01558 * 1 2 3 32 32 H 1.09007 * 109.46984 * 30.00384 * 3 2 1 33 33 H 1.09003 * 109.47067 * 149.99930 * 3 2 1 34 34 H 1.09007 * 109.46499 * 299.99882 * 4 3 2 35 35 H 1.08998 * 109.47058 * 59.99514 * 4 3 2 36 36 H 1.09003 * 109.46539 * 299.99299 * 5 4 3 37 37 H 1.08998 * 109.47617 * 59.99624 * 5 4 3 38 38 H 1.09007 * 109.46685 * 299.99543 * 6 5 4 39 39 H 1.09003 * 109.47679 * 59.99282 * 6 5 4 40 40 H 1.09007 * 109.46855 * 299.99460 * 7 6 5 41 41 H 1.09003 * 109.47283 * 59.99060 * 7 6 5 42 42 H 1.09003 * 109.46904 * 299.99103 * 8 7 6 43 43 H 1.08995 * 109.47448 * 59.99886 * 8 7 6 44 44 H 0.96999 * 120.00239 * 359.97438 * 9 8 7 45 45 H 0.96992 * 120.00407 * 179.97438 * 13 12 10 46 46 H 1.08001 * 125.61766 * 359.97438 * 21 20 18 47 47 H 1.08004 * 120.09312 * 0.02613 * 24 23 22 48 48 H 1.08001 * 119.36375 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.17737 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2181 3.0352 -1.4423 6 6 3.4736 3.4767 -2.8847 7 6 4.2386 4.8016 -2.8847 8 6 4.4947 5.2428 -4.3272 9 7 5.2267 6.5118 -4.3270 10 6 5.5703 7.1041 -5.5129 11 1 5.3012 6.6360 -6.4483 12 6 6.2634 8.3068 -5.5128 13 7 6.5900 8.8781 -4.3730 14 14 6.7315 9.1152 -7.1305 15 1 6.2513 8.2783 -8.2592 16 1 6.1074 10.4603 -7.2106 17 1 8.2084 9.2494 -7.2077 18 6 2.1388 -1.1673 -0.0005 19 8 3.3534 -1.1687 0.0748 20 6 1.4076 -2.4369 -0.0920 21 6 0.1428 -2.7143 0.4512 22 7 -0.1795 -3.9497 0.1592 23 7 0.8531 -4.5399 -0.5739 24 6 1.0254 -5.7818 -1.1099 25 6 2.1609 -6.0706 -1.7864 26 7 3.1233 -5.1624 -1.9421 27 6 3.0017 -3.9527 -1.4432 28 6 1.8424 -3.6086 -0.7348 29 1 -0.3634 0.0899 1.0238 30 1 -0.3634 0.8417 -0.5897 31 1 -0.3635 -0.9314 -0.4340 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1382 0.5139 34 1 3.0415 0.9508 -1.9564 35 1 1.5001 1.8409 -1.9562 36 1 2.6294 3.7950 -0.9283 37 1 4.1706 2.9044 -0.9287 38 1 4.0625 2.7167 -3.3984 39 1 2.5213 3.6073 -3.3989 40 1 3.6494 5.5614 -2.3712 41 1 5.1909 4.6714 -2.3705 42 1 5.0842 4.4830 -4.8403 43 1 3.5427 5.3730 -4.8417 44 1 5.4681 6.9324 -3.4870 45 1 7.0747 9.7183 -4.3729 46 1 -0.4653 -2.0221 1.0147 47 1 0.2573 -6.5324 -0.9955 48 1 2.2898 -7.0564 -2.2084 49 1 3.7907 -3.2278 -1.5785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691454436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:03 Heat of formation + Delta-G solvation = 64.337795 kcal Electronic energy + Delta-G solvation = -28352.571882 eV Core-core repulsion = 24316.119228 eV Total energy + Delta-G solvation = -4036.452654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.66677 -40.80615 -39.34619 -37.87043 -36.93833 -35.76200 -34.82425 -33.69836 -32.52158 -31.90999 -30.46712 -28.64162 -27.57145 -26.13693 -25.90267 -24.88108 -23.82365 -23.14335 -22.09578 -21.88195 -20.59483 -19.33617 -19.11781 -18.61101 -17.85496 -17.38168 -17.13450 -16.74068 -16.67693 -16.38661 -16.22718 -15.96820 -15.45536 -15.38206 -15.22710 -14.88028 -14.68532 -14.16338 -14.05432 -14.02696 -13.80788 -13.72488 -13.47022 -13.06839 -12.95187 -12.85252 -12.51991 -12.45582 -12.40064 -12.12870 -11.99563 -11.98169 -11.80193 -11.66916 -11.48850 -11.32490 -11.13472 -11.00994 -10.96840 -10.95188 -9.66340 -9.02090 -9.01382 -7.96831 -5.26506 -0.75092 -0.33409 0.78599 0.95850 1.46387 1.48067 1.58385 1.84088 2.09464 2.36425 2.55217 2.89665 3.08094 3.19430 3.36451 3.61484 3.71245 3.76330 3.93391 4.02798 4.10111 4.14070 4.23026 4.26676 4.31804 4.37619 4.40498 4.43301 4.58811 4.68606 4.69837 4.77541 4.91519 4.92887 4.94489 4.97152 5.01600 5.03196 5.07280 5.18919 5.29408 5.32775 5.37259 5.47230 5.53597 5.54846 5.61671 6.08520 6.26022 6.37718 6.46578 7.15587 7.31381 8.07932 8.31713 9.27159 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.001452 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.321296 B =19284.895467 C =20230.518167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.606 5.606 3 C 0.116 3.884 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.114 4.114 8 C 0.148 3.852 9 N -0.750 5.750 10 C -0.251 4.251 11 H 0.075 0.925 12 C -0.077 4.077 13 N -0.970 5.970 14 Si 0.978 3.022 15 H -0.266 1.266 16 H -0.290 1.290 17 H -0.291 1.291 18 C 0.591 3.409 19 O -0.583 6.583 20 C -0.295 4.295 21 C 0.124 3.876 22 N -0.321 5.321 23 N -0.253 5.253 24 C 0.072 3.928 25 C 0.028 3.972 26 N -0.453 5.453 27 C 0.142 3.858 28 C 0.079 3.921 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.014 0.986 43 H 0.020 0.980 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.241 0.759 47 H 0.222 0.778 48 H 0.227 0.773 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.825 -33.645 12.858 41.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.337 5.337 3 C -0.006 4.006 4 C -0.161 4.161 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.152 4.152 8 C 0.021 3.979 9 N -0.393 5.393 10 C -0.383 4.383 11 H 0.093 0.907 12 C -0.270 4.270 13 N -0.621 5.621 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.217 1.217 17 H -0.218 1.218 18 C 0.380 3.620 19 O -0.464 6.464 20 C -0.313 4.313 21 C -0.054 4.054 22 N -0.144 5.144 23 N -0.020 5.020 24 C -0.057 4.057 25 C -0.115 4.115 26 N -0.164 5.164 27 C -0.036 4.036 28 C -0.044 4.044 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.257 0.743 47 H 0.239 0.761 48 H 0.244 0.756 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.563 -34.915 12.411 42.378 hybrid contribution 0.657 1.738 -0.175 1.866 sum -19.906 -33.177 12.236 40.579 Atomic orbital electron populations 1.22447 0.77313 1.04682 1.03927 1.47717 1.08461 1.05026 1.72506 1.21559 0.97736 0.84241 0.97034 1.21827 1.00734 0.96598 0.96990 1.21441 1.00463 0.96711 0.96120 1.21422 1.00050 0.95199 0.97633 1.21619 1.00261 0.97931 0.95395 1.20870 0.93848 0.86635 0.96506 1.42653 1.67599 1.23697 1.05319 1.19730 1.28593 1.02684 0.87291 0.90723 1.25641 1.01969 0.98884 1.00459 1.69829 1.46304 1.19853 1.26110 0.85009 0.77189 0.78020 0.79141 1.19061 1.21670 1.21850 1.17234 0.85968 0.83204 0.75578 1.90794 1.15289 1.87862 1.52433 1.19684 0.99841 0.94958 1.16853 1.24937 0.93012 0.92839 0.94610 1.77683 1.08283 1.10745 1.17677 1.46496 1.12557 1.09939 1.32978 1.23480 1.02178 0.84799 0.95256 1.23210 0.87817 1.01698 0.98744 1.68253 1.30243 1.01446 1.16490 1.23103 0.94333 0.94334 0.91853 1.20467 0.92452 0.91006 1.00520 0.89466 0.89444 0.89952 0.87547 0.91507 0.93797 0.90660 0.90476 0.92481 0.92609 0.91279 0.92051 0.92886 0.96777 0.96204 0.79486 0.93890 0.74331 0.76100 0.75627 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 9.09 127.77 1.16 1.52 16 2 N -0.61 -9.13 2.87 -851.35 -2.45 -11.58 16 3 C 0.12 1.86 5.46 86.38 0.47 2.33 16 4 C -0.12 -2.22 5.54 30.59 0.17 -2.05 16 5 C -0.11 -2.24 5.21 30.59 0.16 -2.08 16 6 C -0.10 -2.67 5.21 30.59 0.16 -2.51 16 7 C -0.11 -3.81 5.33 30.59 0.16 -3.65 16 8 C 0.15 6.30 6.26 86.38 0.54 6.84 16 9 N -0.75 -40.64 5.60 -343.46 -1.92 -42.57 16 10 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 11 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 12 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 13 N -0.97 -61.17 13.06 21.65 0.28 -60.88 16 14 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 18 C 0.59 12.52 7.58 86.48 0.66 13.18 16 19 O -0.58 -17.13 16.32 -4.32 -0.07 -17.20 16 20 C -0.30 -5.26 5.52 -19.95 -0.11 -5.37 16 21 C 0.12 1.49 9.51 85.35 0.81 2.31 16 22 N -0.32 -4.73 12.60 -56.59 -0.71 -5.44 16 23 N -0.25 -3.75 3.91 -187.15 -0.73 -4.48 16 24 C 0.07 0.54 11.24 83.31 0.94 1.48 16 25 C 0.03 0.22 11.07 83.80 0.93 1.14 16 26 N -0.45 -7.15 10.44 -195.86 -2.05 -9.20 16 27 C 0.14 2.62 11.20 85.22 0.95 3.58 16 28 C 0.08 1.46 6.77 39.39 0.27 1.72 16 29 H 0.09 0.12 7.84 -2.38 -0.02 0.11 16 30 H 0.09 0.38 8.11 -2.38 -0.02 0.37 16 31 H 0.08 0.48 4.87 -2.39 -0.01 0.46 16 32 H 0.11 1.12 8.07 -2.38 -0.02 1.10 16 33 H 0.07 1.38 7.37 -2.39 -0.02 1.36 16 34 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.37 21.29 7.67 -92.71 -0.71 20.58 16 45 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.24 0.86 6.22 -2.91 -0.02 0.84 16 47 H 0.22 -0.21 8.06 -2.91 -0.02 -0.24 16 48 H 0.23 -0.21 8.06 -2.91 -0.02 -0.23 16 49 H 0.18 3.53 7.88 -2.91 -0.02 3.51 16 Total: -1.00 -83.06 407.87 3.20 -79.86 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.25 Total: 21.75 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 8.58 Total: 0.37 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -7.58 Total: -134.14 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.07 Total: -17.20 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -83.06 3.20 -79.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691454436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.200 kcal (2) G-P(sol) polarization free energy of solvation -83.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds