Wall clock time and date at job start Wed Apr 1 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99802 * 2 1 4 4 C 1.52998 * 109.47440 * 269.99996 * 3 2 1 5 5 C 1.52999 * 109.47192 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47192 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47192 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47238 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47181 * 180.02562 * 8 7 6 10 10 C 1.36931 * 120.00000 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00344 * 359.97438 * 10 9 8 12 12 C 1.38815 * 120.00236 * 179.97438 * 10 9 8 13 13 N 1.31626 * 119.99750 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00393 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46770 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47005 * 119.99939 * 14 12 10 17 17 H 1.48499 * 109.47224 * 240.00193 * 14 12 10 18 18 C 1.34779 * 119.99898 * 180.02562 * 2 1 3 19 19 O 1.21752 * 119.99515 * 180.31905 * 18 2 1 20 20 C 1.46190 * 120.00018 * 0.30970 * 18 2 1 21 21 C 1.38722 * 126.76505 * 348.08722 * 20 18 2 22 22 N 1.32277 * 108.17807 * 180.02562 * 21 20 18 23 23 C 1.33139 * 109.71554 * 359.94588 * 22 21 20 24 24 C 1.40624 * 132.29053 * 180.02562 * 23 22 21 25 25 C 1.36305 * 119.22295 * 179.97438 * 24 23 22 26 26 C 1.39870 * 120.12401 * 359.97438 * 25 24 23 27 27 N 1.30809 * 120.77556 * 0.02562 * 26 25 24 28 28 N 1.36653 * 108.62564 * 0.02562 * 23 22 21 29 29 H 1.08991 * 109.47310 * 263.37917 * 1 2 3 30 30 H 1.08996 * 109.47421 * 23.38536 * 1 2 3 31 31 H 1.09001 * 109.47297 * 143.38197 * 1 2 3 32 32 H 1.09000 * 109.47176 * 30.00731 * 3 2 1 33 33 H 1.09006 * 109.46866 * 149.99991 * 3 2 1 34 34 H 1.08998 * 109.47036 * 300.00429 * 4 3 2 35 35 H 1.09006 * 109.47095 * 60.00136 * 4 3 2 36 36 H 1.08998 * 109.47407 * 300.00111 * 5 4 3 37 37 H 1.09001 * 109.47287 * 60.00451 * 5 4 3 38 38 H 1.09000 * 109.47537 * 300.00424 * 6 5 4 39 39 H 1.09006 * 109.47095 * 60.00045 * 6 5 4 40 40 H 1.09007 * 109.47327 * 299.99930 * 7 6 5 41 41 H 1.08994 * 109.47501 * 60.00093 * 7 6 5 42 42 H 1.09007 * 109.46544 * 299.99968 * 8 7 6 43 43 H 1.08994 * 109.47158 * 59.99442 * 8 7 6 44 44 H 0.97005 * 119.99864 * 359.97438 * 9 8 7 45 45 H 0.97003 * 119.99797 * 179.97438 * 13 12 10 46 46 H 1.08005 * 125.90893 * 359.93003 * 21 20 18 47 47 H 1.08004 * 120.38750 * 0.24220 * 24 23 22 48 48 H 1.08004 * 119.93550 * 180.02562 * 25 24 23 49 49 H 1.08001 * 119.61331 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2180 3.0352 -1.4424 6 6 3.4725 3.4773 -2.8848 7 6 4.2385 4.8017 -2.8848 8 6 4.4924 5.2441 -4.3273 9 7 5.2265 6.5119 -4.3272 10 6 5.5686 7.1049 -5.5130 11 1 5.2978 6.6379 -6.4484 12 6 6.2637 8.3065 -5.5130 13 7 6.5944 8.8755 -4.3731 14 14 6.7312 9.1153 -7.1307 15 1 6.2472 8.2804 -8.2594 16 1 6.1091 10.4614 -7.2090 17 1 8.2082 9.2472 -7.2096 18 6 2.1389 -1.1672 -0.0005 19 8 3.3564 -1.1672 0.0053 20 6 1.4079 -2.4333 -0.0079 21 6 0.0500 -2.6093 0.2146 22 7 -0.2191 -3.9012 0.1227 23 6 0.8969 -4.5742 -0.1497 24 6 1.1527 -5.9432 -0.3442 25 6 2.4247 -6.3505 -0.6162 26 6 3.4592 -5.4128 -0.7002 27 7 3.2239 -4.1387 -0.5196 28 7 1.9317 -3.6860 -0.2380 29 1 -0.3633 -0.1185 1.0207 30 1 -0.3634 0.9432 -0.4079 31 1 -0.3634 -0.8248 -0.6130 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5139 34 1 3.0415 0.9509 -1.9563 35 1 1.5000 1.8408 -1.9563 36 1 2.6293 3.7950 -0.9284 37 1 4.1705 2.9044 -0.9287 38 1 4.0609 2.7176 -3.3993 39 1 2.5198 3.6082 -3.3982 40 1 3.6504 5.5616 -2.3702 41 1 5.1911 4.6704 -2.3716 42 1 5.0804 4.4842 -4.8421 43 1 3.5397 5.3754 -4.8401 44 1 5.4701 6.9312 -3.4871 45 1 7.0804 9.7150 -4.3730 46 1 -0.6636 -1.8271 0.4276 47 1 0.3498 -6.6631 -0.2831 48 1 2.6341 -7.3991 -0.7681 49 1 4.4639 -5.7445 -0.9165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692161281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:50 Heat of formation + Delta-G solvation = 103.391739 kcal Electronic energy + Delta-G solvation = -28328.230960 eV Core-core repulsion = 24293.471812 eV Total energy + Delta-G solvation = -4034.759148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.15531 -40.09368 -38.52532 -36.78948 -35.85482 -34.33941 -34.18862 -32.34254 -31.75978 -30.70103 -29.62548 -27.85555 -26.89172 -25.47582 -24.48437 -23.65041 -22.66446 -22.25924 -20.93063 -20.74604 -20.28132 -18.34668 -18.08476 -17.63748 -16.95681 -16.83308 -16.31693 -16.20516 -15.64161 -15.52481 -14.98573 -14.62698 -14.35579 -14.25827 -14.03247 -13.57304 -13.53852 -13.41300 -13.35846 -13.21994 -12.81368 -12.67930 -12.33849 -12.13755 -11.77153 -11.73751 -11.42224 -11.39251 -11.11727 -10.83916 -10.68097 -10.62772 -10.61828 -10.38589 -10.20347 -10.18612 -10.05891 -9.91476 -9.62123 -9.06542 -8.81314 -8.80037 -6.84742 -5.70807 -2.98865 -0.22099 0.27199 1.14502 1.73386 2.51014 2.67089 2.86466 3.38449 3.46976 3.49614 3.52141 3.54822 3.88556 4.12359 4.18914 4.46357 4.55578 4.59046 4.63112 4.73781 4.76395 4.92589 4.96939 5.08385 5.10648 5.13160 5.18473 5.23084 5.40835 5.53504 5.57527 5.59984 5.67703 5.74464 5.76367 5.84469 6.01791 6.05034 6.18063 6.25264 6.42259 6.42797 6.47636 6.56126 6.86553 6.91153 6.97777 6.99669 7.01907 7.75873 7.78264 8.48700 9.59326 10.19422 10.54152 11.52463 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.001408 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.456374 B =19875.864742 C =20618.706897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.604 5.604 3 C 0.118 3.882 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.237 4.237 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.588 3.412 19 O -0.518 6.518 20 C -0.056 4.056 21 C 0.058 3.942 22 N -0.464 5.464 23 C 0.180 3.820 24 C -0.012 4.012 25 C -0.167 4.167 26 C 0.126 3.874 27 N -0.234 5.234 28 N -0.237 5.237 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.216 0.784 47 H 0.166 0.834 48 H 0.162 0.838 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.754 -34.428 13.902 40.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.337 5.337 3 C -0.003 4.003 4 C -0.173 4.173 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.213 4.213 13 N -0.584 5.584 14 Si 0.738 3.262 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.375 3.625 19 O -0.393 6.393 20 C -0.177 4.177 21 C -0.103 4.103 22 N -0.184 5.184 23 C -0.065 4.065 24 C -0.040 4.040 25 C -0.193 4.193 26 C -0.066 4.066 27 N -0.044 5.044 28 N -0.006 5.006 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.232 0.768 47 H 0.184 0.816 48 H 0.179 0.821 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -16.232 -33.853 13.813 40.004 hybrid contribution 0.619 0.220 -0.750 0.997 sum -15.613 -33.633 13.064 39.315 Atomic orbital electron populations 1.22532 0.79656 1.04610 1.02139 1.47484 1.07029 1.05506 1.73730 1.21651 0.97817 0.82871 0.98005 1.21970 1.00946 0.98176 0.96178 1.21519 1.00284 0.95601 0.97947 1.21491 1.00354 0.97521 0.95747 1.21726 1.00016 0.96047 0.98573 1.20664 0.94612 0.88841 0.93473 1.42404 1.66900 1.22230 1.06376 1.19319 1.28883 1.02407 0.86253 0.91172 1.24752 1.01530 0.98113 0.96861 1.69682 1.45223 1.19614 1.23864 0.86104 0.77856 0.79191 0.83001 1.20583 1.21888 1.21882 1.16513 0.86505 0.81881 0.77565 1.90915 1.12602 1.86815 1.48948 1.20852 0.93874 0.84577 1.18441 1.24259 0.92073 0.94181 0.99796 1.70482 1.23756 1.04834 1.19305 1.21342 0.84597 0.93105 1.07417 1.20661 0.98520 0.90915 0.93858 1.21641 0.92192 1.02455 1.03038 1.24385 1.02002 0.88158 0.92074 1.76227 0.95641 1.17027 1.15538 1.46614 1.05423 1.07108 1.41486 0.91527 0.89808 0.89724 0.89887 0.89447 0.91577 0.91815 0.91838 0.91715 0.92205 0.92224 0.92137 0.92107 0.96591 0.96593 0.78343 0.93632 0.76828 0.81608 0.82086 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 8.72 59.85 0.52 0.77 16 2 N -0.60 -5.39 2.87 -183.31 -0.53 -5.91 16 3 C 0.12 1.07 5.38 -4.04 -0.02 1.05 16 4 C -0.13 -1.36 5.54 -26.73 -0.15 -1.51 16 5 C -0.12 -1.30 5.21 -26.73 -0.14 -1.44 16 6 C -0.11 -1.54 5.21 -26.73 -0.14 -1.68 16 7 C -0.13 -2.16 5.33 -26.73 -0.14 -2.30 16 8 C 0.15 3.28 6.26 -4.04 -0.03 3.25 16 9 N -0.74 -19.86 5.60 -59.91 -0.34 -20.20 16 10 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 11 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 12 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 13 N -0.93 -29.26 13.06 55.49 0.72 -28.53 16 14 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 C 0.59 7.20 7.63 -13.07 -0.10 7.10 16 19 O -0.52 -8.36 16.46 5.14 0.08 -8.28 16 20 C -0.06 -0.63 6.93 -81.85 -0.57 -1.19 16 21 C 0.06 0.48 9.75 -17.18 -0.17 0.32 16 22 N -0.46 -4.50 11.25 -12.23 -0.14 -4.64 16 23 C 0.18 1.68 7.85 -156.06 -1.23 0.46 16 24 C -0.01 -0.06 10.11 -39.38 -0.40 -0.46 16 25 C -0.17 -0.52 10.03 -39.67 -0.40 -0.92 16 26 C 0.13 0.66 11.30 -17.38 -0.20 0.46 16 27 N -0.23 -2.49 11.71 30.62 0.36 -2.13 16 28 N -0.24 -2.69 4.05 -8.68 -0.04 -2.73 16 29 H 0.07 0.19 7.54 -51.93 -0.39 -0.20 16 30 H 0.08 0.28 8.02 -51.93 -0.42 -0.13 16 31 H 0.08 0.35 5.00 -51.93 -0.26 0.10 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.14 16 33 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.78 7.67 -40.82 -0.31 10.46 16 45 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 46 H 0.22 0.95 4.53 -52.48 -0.24 0.72 16 47 H 0.17 0.36 8.06 -52.48 -0.42 -0.07 16 48 H 0.16 -0.14 8.06 -52.48 -0.42 -0.56 16 49 H 0.20 0.22 8.06 -52.49 -0.42 -0.20 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -40.28 406.62 -9.62 -49.90 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.46 Total: 2.16 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.39 Total: -3.85 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.05 Total: -64.14 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -40.28 -9.62 -49.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692161281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.295 kcal (2) G-P(sol) polarization free energy of solvation -40.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds