Wall clock time and date at job start Wed Apr 1 2020 03:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47329 * 269.99863 * 3 2 1 5 5 H 1.48497 * 109.47267 * 30.00097 * 3 2 1 6 6 H 1.48498 * 109.47138 * 149.99716 * 3 2 1 7 7 C 1.38811 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00197 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00527 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47407 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47184 * 184.67328 * 11 10 9 13 13 H 1.08995 * 109.58461 * 299.14437 * 12 11 10 14 14 C 1.53193 * 109.58488 * 59.42428 * 12 11 10 15 15 C 1.53050 * 109.31107 * 174.42461 * 14 12 11 16 16 C 1.53039 * 109.53522 * 298.63439 * 15 14 12 17 17 C 1.53193 * 109.31405 * 61.36553 * 16 15 14 18 18 N 1.46920 * 109.59013 * 178.71491 * 12 11 10 19 19 C 1.34779 * 120.62881 * 6.62537 * 18 12 11 20 20 O 1.21697 * 120.00130 * 359.57843 * 19 18 12 21 21 C 1.46681 * 120.00126 * 179.57760 * 19 18 12 22 22 C 1.38049 * 126.20318 * 154.43735 * 21 19 18 23 23 C 1.39257 * 106.97250 * 179.84660 * 22 21 19 24 24 C 1.35958 * 108.03961 * 0.47166 * 23 22 21 25 25 N 1.35113 * 108.76530 * 359.66162 * 24 23 22 26 26 H 0.96999 * 125.68721 * 180.12125 * 25 24 23 27 27 C 1.51023 * 123.85105 * 179.58077 * 24 23 22 28 28 C 1.53316 * 108.41432 * 343.37568 * 27 24 23 29 29 C 1.53110 * 109.53141 * 50.14988 * 28 27 24 30 30 C 1.50841 * 127.70133 * 180.29823 * 23 22 21 31 31 H 0.96996 * 120.00042 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99869 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46537 * 59.99663 * 10 9 7 34 34 H 1.09000 * 109.47076 * 300.00226 * 10 9 7 35 35 H 1.08993 * 109.47825 * 64.67070 * 11 10 9 36 36 H 1.09008 * 109.47176 * 304.66666 * 11 10 9 37 37 H 1.08994 * 109.49971 * 294.37322 * 14 12 11 38 38 H 1.09007 * 109.49888 * 54.47740 * 14 12 11 39 39 H 1.08996 * 109.45760 * 58.65826 * 15 14 12 40 40 H 1.09004 * 109.45897 * 178.61969 * 15 14 12 41 41 H 1.09001 * 109.50285 * 301.41129 * 16 15 14 42 42 H 1.08996 * 109.52128 * 181.33165 * 16 15 14 43 43 H 1.08999 * 109.59001 * 185.57033 * 17 16 15 44 44 H 1.09010 * 109.58546 * 65.14795 * 17 16 15 45 45 H 1.08003 * 126.51326 * 359.97438 * 22 21 19 46 46 H 1.08998 * 109.67239 * 103.10833 * 27 24 23 47 47 H 1.09002 * 109.67777 * 223.64173 * 27 24 23 48 48 H 1.08993 * 109.46017 * 290.13338 * 28 27 24 49 49 H 1.08996 * 109.45270 * 170.15978 * 28 27 24 50 50 H 1.08998 * 109.47065 * 169.59862 * 29 28 27 51 51 H 1.08996 * 109.48224 * 49.58643 * 29 28 27 52 52 H 1.09000 * 109.68350 * 283.47674 * 30 23 22 53 53 H 1.09006 * 109.68044 * 44.03205 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 6 1.8252 -6.1416 0.1174 13 1 2.4956 -6.2542 -0.7346 14 6 2.6385 -6.1522 1.4156 15 6 3.2859 -7.5272 1.5961 16 6 2.1959 -8.5964 1.7002 17 6 1.3776 -8.6135 0.4053 18 7 0.8712 -7.2585 0.1480 19 6 -0.4437 -7.0442 -0.0565 20 8 -0.8517 -5.9161 -0.2614 21 6 -1.3829 -8.1706 -0.0322 22 6 -2.7287 -8.1038 0.2680 23 6 -3.2321 -9.3984 0.1684 24 6 -2.2072 -10.2236 -0.1736 25 7 -1.0805 -9.4884 -0.2987 26 1 -0.2049 -9.8310 -0.5372 27 6 -2.3560 -11.7138 -0.3679 28 6 -3.6758 -12.1566 0.2744 29 6 -4.8115 -11.2542 -0.2155 30 6 -4.6517 -9.8559 0.3937 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8906 34 1 2.6848 -3.7146 -0.8894 35 1 0.4940 -4.8100 -0.9291 36 1 0.3832 -4.7162 0.8449 37 1 3.4146 -5.3886 1.3650 38 1 1.9797 -5.9467 2.2594 39 1 3.9254 -7.7426 0.7401 40 1 3.8852 -7.5297 2.5066 41 1 1.5412 -8.3679 2.5413 42 1 2.6565 -9.5724 1.8524 43 1 0.5399 -9.3027 0.5114 44 1 2.0113 -8.9301 -0.4233 45 1 -3.2857 -7.2159 0.5284 46 1 -2.3701 -11.9454 -1.4329 47 1 -1.5237 -12.2311 0.1096 48 1 -3.5949 -12.0822 1.3587 49 1 -3.8866 -13.1891 -0.0041 50 1 -5.7688 -11.6765 0.0901 51 1 -4.7762 -11.1831 -1.3026 52 1 -4.8593 -9.8954 1.4630 53 1 -5.3415 -9.1639 -0.0894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698919677.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:38 Heat of formation + Delta-G solvation = 10.367515 kcal Electronic energy + Delta-G solvation = -30968.784249 eV Core-core repulsion = 27033.531612 eV Total energy + Delta-G solvation = -3935.252638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.88164 -41.21976 -38.51206 -37.40151 -36.87390 -34.63075 -33.95411 -33.16444 -32.47797 -30.23085 -29.81617 -29.22671 -26.72191 -25.53633 -25.20662 -23.87392 -23.09411 -22.43837 -22.04482 -21.52314 -20.55749 -19.56775 -19.17562 -18.30122 -17.28730 -17.08243 -16.69012 -16.49965 -15.97379 -15.65818 -15.51698 -15.38794 -15.18305 -14.89810 -14.82227 -14.65640 -14.61936 -14.28321 -14.26562 -13.96338 -13.90941 -13.50378 -13.40657 -13.24684 -12.94910 -12.84476 -12.73766 -12.69365 -12.31158 -12.15864 -11.99225 -11.93430 -11.80097 -11.66068 -11.60612 -11.52455 -11.44734 -11.32279 -10.95087 -10.27714 -9.82892 -9.65902 -9.03321 -8.88998 -7.96243 -5.27597 0.44738 1.43136 1.47732 1.56131 1.62857 1.75364 1.99423 2.35886 2.54124 3.35593 3.38401 3.69673 3.76252 3.77936 3.87871 3.98048 4.00217 4.05171 4.10324 4.17394 4.18758 4.33467 4.37083 4.40659 4.45562 4.54972 4.61992 4.64154 4.70490 4.72596 4.73253 4.75428 4.84507 4.90826 4.97658 5.01401 5.10235 5.11457 5.13675 5.18454 5.23701 5.32060 5.33875 5.38267 5.38431 5.44525 5.46465 5.54800 5.63205 5.85003 5.91179 6.24310 6.31900 6.49161 7.10311 7.28569 8.05383 8.30040 9.28170 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.002411 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.288763 B =11611.527703 C =13217.460441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.085 4.085 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.147 3.853 11 C -0.092 4.092 12 C 0.159 3.841 13 H 0.090 0.910 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.128 4.128 17 C 0.079 3.921 18 N -0.604 5.604 19 C 0.574 3.426 20 O -0.562 6.562 21 C -0.069 4.069 22 C -0.127 4.127 23 C -0.191 4.191 24 C 0.059 3.941 25 N -0.519 5.519 26 H 0.432 0.568 27 C -0.051 4.051 28 C -0.111 4.111 29 C -0.117 4.117 30 C -0.050 4.050 31 H 0.251 0.749 32 H 0.368 0.632 33 H 0.030 0.970 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.062 0.938 52 H 0.071 0.929 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -36.786 1.595 36.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.277 4.277 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.020 3.980 11 C -0.130 4.130 12 C 0.056 3.944 13 H 0.107 0.893 14 C -0.170 4.170 15 C -0.151 4.151 16 C -0.166 4.166 17 C -0.043 4.043 18 N -0.336 5.336 19 C 0.364 3.636 20 O -0.441 6.441 21 C -0.181 4.181 22 C -0.154 4.154 23 C -0.197 4.197 24 C -0.059 4.059 25 N -0.123 5.123 26 H 0.279 0.721 27 C -0.089 4.089 28 C -0.149 4.149 29 C -0.155 4.155 30 C -0.088 4.088 31 H 0.060 0.940 32 H 0.199 0.801 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.089 0.911 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.004 -36.135 1.445 36.164 hybrid contribution -0.048 1.913 -0.051 1.915 sum -0.044 -34.222 1.393 34.250 Atomic orbital electron populations 1.69889 1.07029 1.26163 1.59510 1.25775 0.96512 1.01729 1.03638 0.84989 0.77640 0.78623 0.77583 1.21129 1.22049 1.18892 1.19724 0.91626 0.85235 1.41340 0.90145 1.42659 1.05551 1.01590 1.89373 1.21016 0.94047 0.85223 0.97687 1.21901 0.96167 0.92890 1.02092 1.21183 0.89698 0.84302 0.99220 0.89264 1.22036 0.99265 0.99813 0.95838 1.21528 0.97640 0.92383 1.03544 1.21899 0.97419 1.01142 0.96187 1.22605 0.99889 0.81840 0.99919 1.48148 1.05475 1.09704 1.70291 1.17646 0.82026 0.87308 0.76630 1.90996 1.78300 1.23906 1.50929 1.20100 0.95320 0.83936 1.18764 1.21115 0.92192 0.98328 1.03793 1.19563 0.97264 0.91730 1.11101 1.21115 0.85285 0.95808 1.03711 1.42518 1.11087 1.05224 1.53480 0.72133 1.20517 1.00292 0.85064 1.02987 1.21543 0.92683 0.99998 1.00660 1.21599 0.99557 0.93785 1.00529 1.20133 0.90360 0.97309 1.00993 0.93991 0.80065 0.95231 0.96247 0.92411 0.94105 0.90273 0.93560 0.89924 0.90308 0.93006 0.87136 0.88336 0.88036 0.85873 0.88784 0.88212 0.91605 0.88813 0.90164 0.91963 0.91085 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.47 13.06 21.65 0.28 -65.19 16 2 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16 3 Si 0.98 49.14 29.55 68.60 2.03 51.17 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.25 -15.19 9.99 84.03 0.84 -14.35 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 9 N -0.75 -44.10 5.60 -343.46 -1.92 -46.02 16 10 C 0.15 6.77 6.03 86.38 0.52 7.30 16 11 C -0.09 -3.86 3.27 30.59 0.10 -3.76 16 12 C 0.16 4.65 3.02 44.98 0.14 4.78 16 13 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 14 C -0.13 -3.27 4.83 30.68 0.15 -3.12 16 15 C -0.11 -1.75 5.88 30.62 0.18 -1.57 16 16 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 17 C 0.08 1.13 5.57 86.36 0.48 1.61 16 18 N -0.60 -15.61 2.97 -799.69 -2.38 -17.99 16 19 C 0.57 19.13 7.54 86.45 0.65 19.78 16 20 O -0.56 -25.00 12.40 -4.34 -0.05 -25.06 16 21 C -0.07 -1.88 6.47 40.37 0.26 -1.62 16 22 C -0.13 -3.67 10.71 22.47 0.24 -3.43 16 23 C -0.19 -4.10 5.91 -20.10 -0.12 -4.22 16 24 C 0.06 0.95 7.02 41.63 0.29 1.24 16 25 N -0.52 -8.89 4.79 -171.30 -0.82 -9.71 16 26 H 0.43 4.47 6.14 -92.71 -0.57 3.90 16 27 C -0.05 -0.37 6.30 30.06 0.19 -0.18 16 28 C -0.11 -0.77 5.89 30.74 0.18 -0.59 16 29 C -0.12 -1.21 5.90 30.75 0.18 -1.02 16 30 C -0.05 -0.82 6.28 30.01 0.19 -0.64 16 31 H 0.25 16.17 8.31 -92.71 -0.77 15.40 16 32 H 0.37 23.78 7.67 -92.70 -0.71 23.07 16 33 H 0.03 1.30 6.31 -2.38 -0.02 1.29 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.06 2.75 6.37 -2.39 -0.02 2.73 16 36 H 0.04 1.94 7.10 -2.38 -0.02 1.93 16 37 H 0.08 2.04 6.65 -2.39 -0.02 2.03 16 38 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.10 1.17 3.66 -2.40 -0.01 1.17 16 44 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 45 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.07 0.52 8.11 -2.39 -0.02 0.50 16 49 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 52 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -85.49 400.20 1.90 -83.59 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.36 Total: 35.28 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.13 Total: -6.07 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -4.84 Total: -138.91 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.17 kcal Total: -85.49 1.90 -83.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698919677.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.957 kcal (2) G-P(sol) polarization free energy of solvation -85.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds