Wall clock time and date at job start Wed Apr 1 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99962 * 2 1 4 4 H 1.48503 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46875 * 299.99555 * 3 2 1 6 6 H 1.48499 * 109.46873 * 59.99810 * 3 2 1 7 7 C 1.38809 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00407 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82126 * 14.07181 * 9 7 2 11 11 C 1.54915 * 104.84179 * 155.82980 * 10 9 7 12 12 C 1.55153 * 101.58018 * 37.09009 * 11 10 9 13 13 C 1.47023 * 125.64963 * 194.16387 * 9 7 2 14 14 H 1.09007 * 109.88098 * 300.59327 * 13 9 7 15 15 C 1.52995 * 109.88698 * 61.60642 * 13 9 7 16 16 C 1.52994 * 109.47611 * 183.33591 * 15 13 9 17 17 C 1.53000 * 109.47555 * 174.92687 * 16 15 13 18 18 N 1.46496 * 109.47400 * 179.97438 * 17 16 15 19 19 C 1.34772 * 120.00219 * 180.27178 * 18 17 16 20 20 O 1.21283 * 119.99859 * 359.72572 * 19 18 17 21 21 C 1.50702 * 120.00254 * 179.72344 * 19 18 17 22 22 C 1.52991 * 109.47156 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47216 * 180.02562 * 22 21 19 24 24 C 1.50698 * 109.47338 * 180.02562 * 23 22 21 25 25 C 1.38230 * 119.61863 * 125.00100 * 24 23 22 26 26 C 1.38626 * 119.16185 * 179.97438 * 25 24 23 27 27 C 1.38672 * 118.42380 * 359.97438 * 26 25 24 28 28 C 1.38184 * 119.16109 * 0.02562 * 27 26 25 29 29 N 1.31857 * 119.62230 * 304.72754 * 24 23 22 30 30 H 0.97002 * 120.00652 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.29615 * 37.02149 * 10 9 7 32 32 H 1.09005 * 110.43369 * 274.70010 * 10 9 7 33 33 H 1.08993 * 111.00083 * 279.01875 * 11 10 9 34 34 H 1.08997 * 111.03608 * 155.17895 * 11 10 9 35 35 H 1.09002 * 110.72043 * 206.13306 * 12 11 10 36 36 H 1.09005 * 110.71690 * 82.86886 * 12 11 10 37 37 H 1.08995 * 109.46865 * 63.32867 * 15 13 9 38 38 H 1.09002 * 109.47045 * 303.33334 * 15 13 9 39 39 H 1.09001 * 109.47565 * 54.91945 * 16 15 13 40 40 H 1.09004 * 109.46712 * 294.92417 * 16 15 13 41 41 H 1.08995 * 109.46995 * 59.99416 * 17 16 15 42 42 H 1.09004 * 109.46890 * 299.99621 * 17 16 15 43 43 H 0.97002 * 120.00059 * 0.02562 * 18 17 16 44 44 H 1.08997 * 109.46891 * 300.00411 * 21 19 18 45 45 H 1.09002 * 109.46756 * 60.00191 * 21 19 18 46 46 H 1.09003 * 109.47917 * 300.00380 * 22 21 19 47 47 H 1.09002 * 109.47072 * 60.00458 * 22 21 19 48 48 H 1.09005 * 109.47288 * 300.00050 * 23 22 21 49 49 H 1.08996 * 109.47414 * 60.00226 * 23 22 21 50 50 H 1.07997 * 120.42010 * 359.95765 * 25 24 23 51 51 H 1.08002 * 120.79263 * 180.02562 * 26 25 24 52 52 H 1.08005 * 120.42284 * 180.02562 * 27 26 25 53 53 H 1.08003 * 119.61899 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1133 -2.5561 -0.2890 11 6 -0.2530 -4.0232 -0.7665 12 6 0.7680 -4.7476 0.1500 13 6 1.9004 -3.7091 0.2946 14 1 2.6993 -3.9310 -0.4130 15 6 2.4490 -3.7329 1.7226 16 6 3.1184 -5.0824 1.9895 17 6 3.7768 -5.0611 3.3705 18 7 4.4172 -6.3535 3.6262 19 6 5.0594 -6.5686 4.7914 20 8 5.1113 -5.6903 5.6263 21 6 5.7129 -7.9003 5.0571 22 6 6.3671 -7.8805 6.4400 23 6 7.0312 -9.2322 6.7095 24 6 7.6750 -9.2130 8.0718 25 6 7.3438 -10.1844 8.9978 26 6 7.9421 -10.1580 10.2480 27 6 8.8559 -9.1513 10.5213 28 6 9.1372 -8.2142 9.5454 29 7 8.5519 -8.2729 8.3651 30 1 -0.4851 0.8400 -0.0004 31 1 -0.4225 -1.8696 -1.0771 32 1 -0.7051 -2.3924 0.6117 33 1 0.0259 -4.1207 -1.8157 34 1 -1.2632 -4.3954 -0.5967 35 1 1.1366 -5.6563 -0.3260 36 1 0.3242 -4.9718 1.1200 37 1 1.6313 -3.5870 2.4284 38 1 3.1806 -2.9341 1.8441 39 1 3.8762 -5.2690 1.2285 40 1 2.3684 -5.8728 1.9568 41 1 3.0190 -4.8746 4.1314 42 1 4.5267 -4.2707 3.4032 43 1 4.3761 -7.0558 2.9584 44 1 4.9602 -8.6878 5.0220 45 1 6.4727 -8.0898 4.2989 46 1 7.1200 -7.0929 6.4747 47 1 5.6077 -7.6907 7.1985 48 1 6.2786 -10.0201 6.6748 49 1 7.7907 -9.4216 5.9510 50 1 6.6276 -10.9541 8.7505 51 1 7.7030 -10.9042 10.9912 52 1 9.3415 -9.1003 11.4846 53 1 9.8480 -7.4273 9.7502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713440793.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:00 Heat of formation + Delta-G solvation = -30.318085 kcal Electronic energy + Delta-G solvation = -28416.606168 eV Core-core repulsion = 24479.589270 eV Total energy + Delta-G solvation = -3937.016898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12921 -40.68617 -39.45071 -36.78098 -35.87495 -34.68231 -33.67547 -33.27847 -32.35497 -31.24287 -29.76119 -28.22596 -26.61963 -25.62488 -24.50086 -23.84583 -22.69469 -22.05087 -21.85074 -21.24421 -20.64305 -18.71669 -18.11632 -17.58908 -17.20998 -17.02086 -16.94477 -16.81303 -16.26527 -16.12803 -15.96863 -15.65626 -15.25103 -14.88709 -14.72406 -14.31580 -14.12889 -13.99486 -13.85214 -13.70067 -13.57860 -13.19132 -13.05042 -12.95791 -12.79425 -12.76338 -12.63921 -12.54903 -12.24309 -12.18031 -11.96817 -11.82146 -11.66975 -11.66714 -11.53634 -11.30203 -11.15659 -10.86409 -10.77300 -10.66778 -10.29309 -10.07325 -9.85029 -8.77750 -7.85924 -5.21062 0.20813 0.40347 1.42706 1.44129 1.53728 1.70011 2.25468 2.49162 2.88854 3.32864 3.43238 3.69023 3.76025 3.83235 3.97516 4.01522 4.04554 4.14127 4.17416 4.21085 4.26890 4.28782 4.31216 4.36597 4.44736 4.55761 4.62617 4.70282 4.73961 4.76305 4.83411 4.83591 4.86917 4.88235 4.99010 5.01584 5.05594 5.15438 5.16962 5.25270 5.30831 5.34695 5.35321 5.42069 5.49167 5.51375 5.54468 5.68574 5.71418 5.80161 5.85287 6.27605 6.63998 7.11753 7.12542 7.34483 7.82326 8.49841 9.25909 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.001440 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.846983 B =19434.224695 C =20619.137847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.123 3.877 18 N -0.716 5.716 19 C 0.500 3.500 20 O -0.599 6.599 21 C -0.128 4.128 22 C -0.089 4.089 23 C -0.063 4.063 24 C 0.107 3.893 25 C -0.176 4.176 26 C -0.080 4.080 27 C -0.183 4.183 28 C 0.079 3.921 29 N -0.519 5.519 30 H 0.245 0.755 31 H 0.030 0.970 32 H -0.009 1.009 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.420 0.580 44 H 0.130 0.870 45 H 0.122 0.878 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.110 0.890 49 H 0.092 0.908 50 H 0.160 0.840 51 H 0.162 0.838 52 H 0.158 0.842 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.063 -29.964 14.477 36.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.345 5.345 10 C 0.048 3.952 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.001 4.001 18 N -0.368 5.368 19 C 0.288 3.712 20 O -0.480 6.480 21 C -0.167 4.167 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.030 4.030 25 C -0.196 4.196 26 C -0.106 4.106 27 C -0.202 4.202 28 C -0.078 4.078 29 N -0.230 5.230 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.009 0.991 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.258 0.742 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.129 0.871 49 H 0.110 0.890 50 H 0.178 0.822 51 H 0.179 0.821 52 H 0.175 0.825 53 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.274 -28.504 14.401 34.980 hybrid contribution -0.003 1.270 0.648 1.426 sum 14.271 -27.234 15.049 34.232 Atomic orbital electron populations 1.70147 1.06273 1.25038 1.58401 1.25648 0.96496 1.00879 1.02886 0.85139 0.78331 0.80072 0.76643 1.19140 1.21755 1.22285 1.19330 0.90667 0.83788 1.42062 0.90687 1.44949 1.06288 1.02513 1.80728 1.21282 0.84563 0.93335 0.96053 1.22874 0.99759 0.95575 0.99300 1.22583 0.95066 0.97306 0.99819 1.21230 0.95231 0.85463 0.93575 0.94616 1.21833 0.98916 0.96584 0.98042 1.21619 1.00433 0.97619 0.94722 1.21202 0.95955 0.85405 0.97560 1.45952 1.55198 1.16560 1.19137 1.21602 0.77761 0.90938 0.80884 1.90713 1.61747 1.48230 1.47323 1.21720 1.02308 0.93311 0.99350 1.21095 0.98974 0.97131 0.95602 1.20621 1.00013 0.97947 0.91519 1.21695 0.92993 0.90687 0.97647 1.22351 1.02180 1.00590 0.94432 1.22031 0.93818 0.97737 0.96979 1.22459 0.99929 0.96110 1.01720 1.23121 0.97536 0.98432 0.88709 1.67459 1.09174 1.24361 1.21958 0.94533 0.95151 0.99138 0.91731 0.90039 0.88290 0.91073 0.94227 0.94759 0.89933 0.88943 0.93428 0.93950 0.74245 0.85228 0.85972 0.93565 0.93721 0.87129 0.88957 0.82216 0.82056 0.82453 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 10.58 21.65 0.23 -58.40 16 2 C -0.07 -3.86 5.47 84.86 0.46 -3.40 16 3 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.23 -13.03 9.75 84.03 0.82 -12.21 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -31.82 3.14 -667.44 -2.09 -33.92 16 10 C 0.17 8.62 5.44 86.80 0.47 9.09 16 11 C -0.14 -4.85 7.09 31.99 0.23 -4.62 16 12 C -0.11 -3.33 5.61 31.78 0.18 -3.15 16 13 C 0.15 5.82 3.18 45.34 0.14 5.96 16 14 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 15 C -0.11 -4.01 4.69 30.59 0.14 -3.87 16 16 C -0.11 -2.48 5.07 30.59 0.16 -2.33 16 17 C 0.12 3.20 5.67 86.38 0.49 3.69 16 18 N -0.72 -13.68 5.56 -463.07 -2.57 -16.26 16 19 C 0.50 11.50 7.83 87.66 0.69 12.19 16 20 O -0.60 -20.99 15.98 -3.04 -0.05 -21.04 16 21 C -0.13 -1.59 5.70 29.85 0.17 -1.42 16 22 C -0.09 -1.58 4.36 30.59 0.13 -1.45 16 23 C -0.06 -0.74 5.61 29.85 0.17 -0.57 16 24 C 0.11 1.76 6.17 42.55 0.26 2.03 16 25 C -0.18 -2.04 9.71 22.36 0.22 -1.82 16 26 C -0.08 -0.80 10.18 22.47 0.23 -0.57 16 27 C -0.18 -2.09 10.11 22.36 0.23 -1.87 16 28 C 0.08 1.29 11.18 84.67 0.95 2.24 16 29 N -0.52 -10.95 9.89 -183.88 -1.82 -12.77 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.03 1.72 6.90 -2.39 -0.02 1.70 16 32 H -0.01 -0.52 8.08 -2.38 -0.02 -0.54 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.04 7.79 -2.38 -0.02 2.02 16 37 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 38 H 0.03 1.39 7.89 -2.39 -0.02 1.37 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.73 7.57 -2.38 -0.02 1.71 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.42 4.47 8.47 -92.71 -0.79 3.68 16 44 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 47 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 48 H 0.11 0.57 7.87 -2.38 -0.02 0.55 16 49 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.16 0.88 7.95 -2.91 -0.02 0.85 16 51 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 52 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 53 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -84.29 427.19 1.94 -82.35 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.09 Total: 12.72 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.13 Total: -2.07 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -6.26 Total: -121.34 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -84.29 1.94 -82.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440793.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.035 kcal (2) G-P(sol) polarization free energy of solvation -84.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds