Wall clock time and date at job start Wed Apr 1 2020 03:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00072 * 2 1 4 4 H 1.48499 * 109.46773 * 264.77819 * 3 2 1 5 5 H 1.48503 * 109.46777 * 24.77742 * 3 2 1 6 6 H 1.48492 * 109.47122 * 144.77953 * 3 2 1 7 7 C 1.38812 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99877 * 340.97157 * 7 2 1 9 9 N 1.36941 * 119.99824 * 160.96376 * 7 2 1 10 10 C 1.47421 * 125.65186 * 339.76423 * 9 7 2 11 11 C 1.54898 * 104.83540 * 204.16009 * 10 9 7 12 12 C 1.55161 * 101.58262 * 322.99316 * 11 10 9 13 13 C 1.47025 * 125.64632 * 159.80140 * 9 7 2 14 14 H 1.09008 * 109.87945 * 59.33565 * 13 9 7 15 15 C 1.52995 * 109.88199 * 298.33019 * 13 9 7 16 16 C 1.52999 * 109.47668 * 66.72893 * 15 13 9 17 17 C 1.52999 * 109.47510 * 176.24355 * 16 15 13 18 18 N 1.46495 * 109.47448 * 180.02562 * 17 16 15 19 19 C 1.34773 * 120.00356 * 179.97438 * 18 17 16 20 20 O 1.21279 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00026 * 180.27101 * 19 18 17 22 22 C 1.53003 * 109.46663 * 179.72860 * 21 19 18 23 23 C 1.53002 * 109.46740 * 180.02562 * 22 21 19 24 24 C 1.50708 * 109.47172 * 180.02562 * 23 22 21 25 25 C 1.38224 * 119.61826 * 124.99364 * 24 23 22 26 26 C 1.38629 * 119.15848 * 179.97438 * 25 24 23 27 27 C 1.38679 * 118.42066 * 0.02562 * 26 25 24 28 28 C 1.38180 * 119.16169 * 0.02562 * 27 26 25 29 29 N 1.31849 * 119.61396 * 304.72318 * 24 23 22 30 30 H 0.97001 * 120.00337 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.36747 * 323.00541 * 10 9 7 32 32 H 1.09000 * 110.36652 * 85.31983 * 10 9 7 33 33 H 1.09008 * 111.00480 * 81.06241 * 11 10 9 34 34 H 1.09001 * 111.00849 * 204.87929 * 11 10 9 35 35 H 1.08998 * 110.71809 * 277.13424 * 12 11 10 36 36 H 1.08999 * 110.72400 * 153.86310 * 12 11 10 37 37 H 1.09008 * 109.46856 * 306.72499 * 15 13 9 38 38 H 1.09000 * 109.46885 * 186.72926 * 15 13 9 39 39 H 1.08998 * 109.47073 * 56.23880 * 16 15 13 40 40 H 1.08996 * 109.46800 * 296.24394 * 16 15 13 41 41 H 1.08998 * 109.47341 * 59.99688 * 17 16 15 42 42 H 1.09000 * 109.46731 * 300.00118 * 17 16 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 18 17 16 44 44 H 1.08993 * 109.47254 * 299.72957 * 21 19 18 45 45 H 1.08998 * 109.46895 * 59.73550 * 21 19 18 46 46 H 1.09002 * 109.47537 * 299.99843 * 22 21 19 47 47 H 1.08994 * 109.47315 * 60.00438 * 22 21 19 48 48 H 1.09006 * 109.46811 * 299.99606 * 23 22 21 49 49 H 1.08994 * 109.47444 * 59.99801 * 23 22 21 50 50 H 1.07995 * 120.42613 * 359.95865 * 25 24 23 51 51 H 1.07995 * 120.79049 * 180.02562 * 26 25 24 52 52 H 1.07998 * 120.41483 * 180.02562 * 27 26 25 53 53 H 1.07995 * 119.61534 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6080 1.9826 -1.3943 5 1 1.3968 2.6820 0.5868 6 1 3.4882 1.4745 0.8074 7 6 2.0102 -1.2021 0.0005 8 1 1.5145 -2.1117 0.3059 9 7 3.3235 -1.2347 -0.3863 10 6 4.0038 -0.2144 -1.2044 11 6 5.1895 -0.9612 -1.8644 12 6 5.6270 -1.9195 -0.7253 13 6 4.2883 -2.2935 -0.0550 14 1 3.9340 -3.2507 -0.4377 15 6 4.4707 -2.3753 1.4618 16 6 3.1693 -2.8560 2.1069 17 6 3.3793 -3.0275 3.6127 18 7 2.1334 -3.4884 4.2303 19 6 2.0814 -3.7098 5.5587 20 8 3.0659 -3.5271 6.2429 21 6 0.8014 -4.1898 6.1930 22 6 1.0133 -4.3671 7.6979 23 6 -0.2860 -4.8550 8.3418 24 6 -0.0775 -5.0291 9.8242 25 6 -0.9142 -4.3800 10.7126 26 6 -0.7142 -4.5472 12.0741 27 6 0.3250 -5.3644 12.4931 28 6 1.1212 -5.9800 11.5463 29 7 0.8975 -5.8030 10.2586 30 1 -0.4851 0.8400 -0.0004 31 1 3.3279 0.1732 -1.9667 32 1 4.3696 0.5957 -0.5735 33 1 4.8603 -1.5202 -2.7404 34 1 5.9913 -0.2697 -2.1236 35 1 6.2814 -1.4070 -0.0202 36 1 6.1151 -2.8050 -1.1323 37 1 4.7265 -1.3895 1.8507 38 1 5.2720 -3.0767 1.6941 39 1 2.8781 -3.8110 1.6696 40 1 2.3836 -2.1213 1.9311 41 1 3.6705 -2.0725 4.0501 42 1 4.1651 -3.7622 3.7885 43 1 1.3459 -3.6342 3.6831 44 1 0.0135 -3.4567 6.0209 45 1 0.5129 -5.1439 5.7519 46 1 1.8014 -5.1003 7.8700 47 1 1.3020 -3.4131 8.1390 48 1 -1.0743 -4.1221 8.1697 49 1 -0.5743 -5.8090 7.9006 50 1 -1.7135 -3.7503 10.3507 51 1 -1.3524 -4.0529 12.7915 52 1 0.5096 -5.5177 13.5461 53 1 1.9328 -6.6175 11.8644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713440794.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:03 Heat of formation + Delta-G solvation = -23.106362 kcal Electronic energy + Delta-G solvation = -29085.176492 eV Core-core repulsion = 25148.472318 eV Total energy + Delta-G solvation = -3936.704174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.13612 -40.69176 -39.73303 -36.71548 -35.87377 -34.57953 -33.88817 -33.28647 -32.37890 -31.72355 -30.08908 -28.35610 -26.45057 -25.68821 -24.50664 -23.87688 -23.05577 -22.05503 -21.88393 -21.11823 -20.69789 -18.79634 -18.09514 -17.58988 -17.44275 -17.19698 -17.05780 -16.84085 -16.65188 -16.23096 -15.91736 -15.28669 -15.06653 -14.96275 -14.81031 -14.64681 -14.32011 -14.15569 -13.98279 -13.81447 -13.68410 -13.41906 -13.08881 -13.02525 -12.86793 -12.74083 -12.59118 -12.55181 -12.40801 -12.20580 -12.09188 -11.79856 -11.69415 -11.58488 -11.43445 -11.38003 -11.12177 -10.83125 -10.77305 -10.67760 -10.29875 -10.05816 -9.85519 -8.92290 -8.09016 -5.33351 0.20344 0.39905 1.30158 1.39401 1.45298 1.67241 2.28812 2.45908 2.88513 3.15127 3.38004 3.41692 3.73421 3.80701 3.87855 3.97645 4.03805 4.11091 4.14380 4.18417 4.20590 4.25677 4.28280 4.30249 4.46895 4.50515 4.55713 4.66100 4.68512 4.73627 4.75379 4.79226 4.82243 4.85821 4.89007 4.96819 4.98077 5.02803 5.15305 5.17324 5.20579 5.28381 5.30266 5.33168 5.39359 5.40081 5.50155 5.64207 5.65469 5.84311 5.84642 6.20330 6.59758 6.86727 7.11038 7.27818 7.64891 8.23953 9.10313 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.001731 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.438006 B =16174.372185 C =17177.531804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.040 4.040 3 Si 0.934 3.066 4 H -0.280 1.280 5 H -0.319 1.319 6 H -0.274 1.274 7 C -0.199 4.199 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.095 3.905 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.150 3.850 14 H 0.045 0.955 15 C -0.112 4.112 16 C -0.128 4.128 17 C 0.130 3.870 18 N -0.722 5.722 19 C 0.503 3.497 20 O -0.594 6.594 21 C -0.133 4.133 22 C -0.084 4.084 23 C -0.066 4.066 24 C 0.109 3.891 25 C -0.178 4.178 26 C -0.079 4.079 27 C -0.181 4.181 28 C 0.081 3.919 29 N -0.517 5.517 30 H 0.257 0.743 31 H 0.034 0.966 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.413 0.587 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.155 0.845 51 H 0.161 0.839 52 H 0.160 0.840 53 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -11.739 17.509 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.234 4.234 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.248 1.248 6 H -0.200 1.200 7 C -0.328 4.328 8 H 0.097 0.903 9 N -0.347 5.347 10 C -0.030 4.030 11 C -0.159 4.159 12 C -0.156 4.156 13 C 0.045 3.955 14 H 0.062 0.938 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.006 3.994 18 N -0.374 5.374 19 C 0.292 3.708 20 O -0.475 6.475 21 C -0.172 4.172 22 C -0.123 4.123 23 C -0.103 4.103 24 C -0.029 4.029 25 C -0.198 4.198 26 C -0.105 4.105 27 C -0.200 4.200 28 C -0.076 4.076 29 N -0.227 5.227 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.249 0.751 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.122 0.878 49 H 0.111 0.889 50 H 0.173 0.827 51 H 0.179 0.821 52 H 0.178 0.822 53 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.569 -11.951 17.386 21.254 hybrid contribution -0.761 1.694 0.469 1.915 sum 1.807 -10.258 17.855 20.671 Atomic orbital electron populations 1.69891 1.06630 1.26476 1.57629 1.25493 0.95662 0.99824 1.02405 0.86165 0.77608 0.81849 0.77780 1.20663 1.24807 1.19986 1.18615 0.84125 0.93780 1.36256 0.90271 1.45090 1.07151 1.23709 1.58738 1.22091 0.94828 0.92784 0.93291 1.22682 0.96584 0.98650 0.97968 1.22622 0.95558 1.00219 0.97168 1.21288 0.89457 0.91551 0.93205 0.93760 1.21829 0.96677 1.00214 0.96465 1.21904 1.00379 1.02178 0.92074 1.21251 0.86464 0.98321 0.93410 1.46125 1.15223 1.67685 1.08334 1.21455 0.91204 0.76322 0.81839 1.90661 1.39434 1.54222 1.63199 1.21738 0.94331 1.05046 0.96105 1.21062 0.97475 1.00836 0.92892 1.20613 0.97937 1.03535 0.88238 1.21591 0.91072 0.92549 0.97652 1.22326 1.01534 1.01622 0.94306 1.22021 0.96673 0.95668 0.96149 1.22470 0.96629 0.98596 1.02350 1.23167 0.98879 0.97594 0.87978 1.67453 1.19250 1.17169 1.18797 0.93419 0.94792 0.96599 0.90672 0.89104 0.90721 0.88391 0.94059 0.90142 0.91493 0.90799 0.94126 0.91886 0.75077 0.86489 0.86056 0.92789 0.93727 0.87805 0.88929 0.82698 0.82095 0.82207 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.52 13.97 21.65 0.30 -58.22 16 2 C -0.04 -2.30 5.46 84.86 0.46 -1.83 16 3 Si 0.93 47.31 24.25 68.60 1.66 48.97 16 4 H -0.28 -13.61 6.54 99.48 0.65 -12.96 16 5 H -0.32 -16.64 7.11 99.48 0.71 -15.93 16 6 H -0.27 -13.56 6.44 99.48 0.64 -12.92 16 7 C -0.20 -10.51 8.12 84.03 0.68 -9.83 16 8 H 0.08 4.39 6.90 -2.91 -0.02 4.36 16 9 N -0.62 -27.70 2.93 -668.29 -1.96 -29.66 16 10 C 0.09 3.91 4.69 86.85 0.41 4.31 16 11 C -0.12 -3.56 7.08 31.98 0.23 -3.34 16 12 C -0.12 -3.18 6.48 31.78 0.21 -2.97 16 13 C 0.15 5.22 3.24 45.34 0.15 5.36 16 14 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 15 C -0.11 -3.64 4.73 30.59 0.14 -3.50 16 16 C -0.13 -4.30 4.57 30.59 0.14 -4.16 16 17 C 0.13 4.13 5.67 86.38 0.49 4.62 16 18 N -0.72 -20.74 5.56 -463.08 -2.57 -23.31 16 19 C 0.50 14.94 7.83 87.66 0.69 15.63 16 20 O -0.59 -22.89 15.98 -3.03 -0.05 -22.94 16 21 C -0.13 -2.65 5.70 29.85 0.17 -2.48 16 22 C -0.08 -1.89 4.36 30.60 0.13 -1.76 16 23 C -0.07 -1.09 5.61 29.85 0.17 -0.92 16 24 C 0.11 2.15 6.17 42.56 0.26 2.42 16 25 C -0.18 -2.69 9.71 22.36 0.22 -2.48 16 26 C -0.08 -0.99 10.18 22.47 0.23 -0.76 16 27 C -0.18 -2.35 10.11 22.36 0.23 -2.13 16 28 C 0.08 1.43 11.18 84.67 0.95 2.37 16 29 N -0.52 -11.93 9.89 -183.89 -1.82 -13.75 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.03 1.53 6.62 -2.39 -0.02 1.52 16 32 H 0.02 0.71 5.38 -2.39 -0.01 0.69 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.90 7.85 -2.39 -0.02 1.88 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 3.11 5.06 -2.39 -0.01 3.10 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.41 10.23 8.47 -92.71 -0.79 9.44 16 44 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.49 7.91 -2.39 -0.02 1.48 16 47 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 48 H 0.10 1.21 7.87 -2.38 -0.02 1.19 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.16 1.56 7.95 -2.91 -0.02 1.53 16 51 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 52 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 53 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -76.83 415.88 1.49 -75.34 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.02 Total: 24.99 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.95 Total: -1.43 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.05 Total: -124.93 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.66 Total: 48.97 kcal Total: -76.83 1.49 -75.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713440794.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.232 kcal (2) G-P(sol) polarization free energy of solvation -76.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds