Wall clock time and date at job start Wed Apr 1 2020 03:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00496 * 2 1 4 4 H 1.48497 * 109.46909 * 270.00232 * 3 2 1 5 5 H 1.48496 * 109.46802 * 30.00129 * 3 2 1 6 6 H 1.48495 * 109.47074 * 150.00121 * 3 2 1 7 7 C 1.38813 * 119.99404 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99987 * 163.13050 * 7 2 1 9 9 N 1.36930 * 120.00356 * 343.13329 * 7 2 1 10 10 C 1.46972 * 120.77525 * 151.94649 * 9 7 2 11 11 C 1.53100 * 108.76660 * 125.63379 * 10 9 7 12 12 C 1.53536 * 109.38114 * 55.26922 * 11 10 9 13 13 H 1.08996 * 110.62642 * 61.10404 * 12 11 10 14 14 C 1.53148 * 109.67238 * 299.51751 * 12 11 10 15 15 H 1.08997 * 109.25546 * 179.61776 * 14 12 11 16 16 C 1.52859 * 109.36409 * 298.35846 * 14 12 11 17 17 C 1.53121 * 109.34558 * 297.97774 * 16 14 12 18 18 C 1.53148 * 109.47902 * 60.64621 * 17 16 14 19 19 N 1.46949 * 109.02113 * 305.92642 * 18 17 16 20 20 C 1.34775 * 120.84390 * 234.00572 * 19 18 17 21 21 O 1.21283 * 119.99773 * 180.02562 * 20 19 18 22 22 C 1.50702 * 120.00316 * 0.02562 * 20 19 18 23 23 C 1.53005 * 109.47036 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.46595 * 180.02562 * 23 22 20 25 25 N 1.46501 * 109.46885 * 179.97438 * 24 23 22 26 26 C 1.36341 * 125.63936 * 269.69605 * 25 24 23 27 27 C 1.34855 * 108.22048 * 179.82828 * 26 25 24 28 28 C 1.40889 * 107.41486 * 0.42262 * 27 26 25 29 29 C 1.34851 * 107.41760 * 359.73643 * 28 27 26 30 30 C 1.46897 * 120.77137 * 331.97045 * 9 7 2 31 31 H 0.97003 * 119.99183 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.61533 * 245.46457 * 10 9 7 33 33 H 1.08996 * 109.60989 * 5.80997 * 10 9 7 34 34 H 1.08999 * 109.44868 * 175.45891 * 11 10 9 35 35 H 1.08998 * 109.45012 * 295.39039 * 11 10 9 36 36 H 1.09001 * 109.49413 * 57.93758 * 16 14 12 37 37 H 1.08999 * 109.49432 * 178.01842 * 16 14 12 38 38 H 1.08999 * 109.46790 * 300.64502 * 17 16 14 39 39 H 1.08999 * 109.46715 * 180.64579 * 17 16 14 40 40 H 1.09005 * 109.54232 * 186.06472 * 18 17 16 41 41 H 1.09003 * 109.61980 * 65.83512 * 18 17 16 42 42 H 1.09001 * 109.46971 * 300.00005 * 22 20 19 43 43 H 1.08999 * 109.46561 * 59.99873 * 22 20 19 44 44 H 1.09006 * 109.46800 * 299.99920 * 23 22 20 45 45 H 1.08994 * 109.47267 * 60.00081 * 23 22 20 46 46 H 1.09001 * 109.47036 * 299.99784 * 24 23 22 47 47 H 1.09000 * 109.47512 * 60.00416 * 24 23 22 48 48 H 1.08001 * 125.88721 * 359.95270 * 26 25 24 49 49 H 1.07995 * 126.28917 * 180.15922 * 27 26 25 50 50 H 1.07998 * 126.28754 * 179.73399 * 28 27 26 51 51 H 1.08003 * 125.88783 * 180.02562 * 29 28 27 52 52 H 1.09002 * 109.51523 * 353.23153 * 30 9 7 53 53 H 1.08998 * 109.51493 * 113.40087 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2223 -0.2720 9 7 1.3697 -2.3627 0.3430 10 6 1.8130 -3.6551 -0.1986 11 6 2.0808 -4.6116 0.9664 12 6 0.8255 -4.7084 1.8451 13 1 -0.0147 -5.1008 1.2725 14 6 0.4797 -3.3252 2.4043 15 1 -0.4157 -3.4004 3.0212 16 6 1.6324 -2.8286 3.2768 17 6 1.8200 -3.7819 4.4603 18 6 2.1562 -5.1824 3.9396 19 7 1.1228 -5.5978 2.9811 20 6 0.4641 -6.7633 3.1370 21 8 -0.3857 -7.0914 2.3363 22 6 0.7836 -7.6588 4.3062 23 6 -0.0994 -8.9071 4.2487 24 6 0.2245 -9.8158 5.4362 25 7 -0.6214 -11.0108 5.3815 26 6 -1.8475 -11.1434 5.9628 27 6 -2.3125 -12.3793 5.6890 28 6 -1.3334 -13.0370 4.9185 29 6 -0.3100 -12.1760 4.7458 30 6 0.2231 -2.3448 1.2611 31 1 -0.4849 0.8401 0.0004 32 1 1.0353 -4.0689 -0.8404 33 1 2.7274 -3.5158 -0.7752 34 1 2.3325 -5.5976 0.5759 35 1 2.9121 -4.2343 1.5620 36 1 2.5482 -2.7972 2.6864 37 1 1.4038 -1.8294 3.6474 38 1 0.9001 -3.8223 5.0435 39 1 2.6341 -3.4233 5.0901 40 1 2.1839 -5.8843 4.7731 41 1 3.1272 -5.1655 3.4446 42 1 1.8323 -7.9528 4.2628 43 1 0.5946 -7.1230 5.2364 44 1 -1.1481 -8.6126 4.2924 45 1 0.0891 -9.4429 3.3185 46 1 1.2731 -10.1102 5.3929 47 1 0.0356 -9.2798 6.3662 48 1 -2.3591 -10.3881 6.5409 49 1 -3.2592 -12.7908 6.0062 50 1 -1.3918 -14.0455 4.5364 51 1 0.5993 -12.3751 4.1980 52 1 0.0952 -1.3403 1.6645 53 1 -0.6782 -2.6399 0.7238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713977971.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:19 Heat of formation + Delta-G solvation = 13.164207 kcal Electronic energy + Delta-G solvation = -30950.568121 eV Core-core repulsion = 27015.436757 eV Total energy + Delta-G solvation = -3935.131364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95544 -41.60429 -39.58567 -37.09390 -35.92036 -34.36477 -33.93972 -32.40438 -31.68862 -31.05903 -29.60975 -27.93969 -27.17011 -26.06658 -24.25532 -23.51824 -23.11052 -22.64673 -21.31949 -20.79941 -20.28258 -19.39970 -18.55642 -18.36006 -17.82054 -16.96776 -16.90426 -16.71641 -16.03647 -15.64354 -15.49431 -15.39543 -15.14043 -15.01189 -14.63136 -14.48834 -14.29195 -14.08640 -13.90349 -13.81208 -13.56837 -13.30989 -13.22594 -12.95944 -12.92044 -12.86959 -12.74376 -12.62079 -12.56985 -12.47552 -12.17321 -11.98597 -11.83988 -11.79892 -11.76408 -11.43309 -11.32780 -11.07786 -10.70409 -10.53640 -9.52101 -9.47544 -9.02078 -8.69676 -7.87462 -5.33083 1.41077 1.46814 1.48063 1.57728 1.67745 1.96524 2.17929 2.23690 2.51042 3.28629 3.49005 3.62662 3.80465 3.82124 3.90903 3.96125 4.02484 4.13212 4.22166 4.26352 4.31263 4.34913 4.38899 4.42880 4.46190 4.55129 4.60304 4.64296 4.71667 4.72797 4.74134 4.81621 4.89515 4.95867 4.98915 5.01760 5.04255 5.12725 5.16446 5.22423 5.25229 5.30872 5.42746 5.45734 5.47315 5.59222 5.63032 5.67239 5.70371 6.12799 6.37590 6.37837 6.55239 6.59313 7.13290 7.23570 7.83353 8.37835 9.19642 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.002023 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.794082 B =13837.393789 C =14043.740894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.162 3.838 13 H 0.056 0.944 14 C -0.104 4.104 15 H 0.051 0.949 16 C -0.100 4.100 17 C -0.126 4.126 18 C 0.103 3.897 19 N -0.605 5.605 20 C 0.502 3.498 21 O -0.600 6.600 22 C -0.123 4.123 23 C -0.112 4.112 24 C 0.108 3.892 25 N -0.450 5.450 26 C -0.026 4.026 27 C -0.230 4.230 28 C -0.230 4.230 29 C -0.024 4.024 30 C 0.188 3.812 31 H 0.248 0.752 32 H 0.002 0.998 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.177 0.823 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.179 0.821 52 H 0.060 0.940 53 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -19.530 17.842 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.058 3.942 13 H 0.074 0.926 14 C -0.125 4.125 15 H 0.069 0.931 16 C -0.137 4.137 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.336 5.336 20 C 0.293 3.707 21 O -0.482 6.482 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.013 4.013 25 N -0.125 5.125 26 C -0.156 4.156 27 C -0.254 4.254 28 C -0.254 4.254 29 C -0.154 4.154 30 C 0.061 3.939 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.194 0.806 49 H 0.156 0.844 50 H 0.157 0.843 51 H 0.196 0.804 52 H 0.079 0.921 53 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges 6.354 -19.262 17.455 26.759 hybrid contribution -0.672 1.291 -1.006 1.769 sum 5.683 -17.971 16.449 25.016 Atomic orbital electron populations 1.70211 1.06859 1.25765 1.55677 1.25820 0.95926 1.01585 1.01395 0.85292 0.78236 0.79570 0.77452 1.21490 1.22190 1.18970 1.19470 0.92780 0.85520 1.40580 0.91140 1.44212 1.35424 1.02165 1.50525 1.20999 0.97380 0.86164 0.93997 1.22220 0.97514 0.98957 0.97355 1.20961 0.97255 0.88833 0.87158 0.92571 1.21775 0.98595 0.94750 0.97361 0.93086 1.21364 0.97925 0.98194 0.96238 1.21928 1.03061 0.94476 0.96948 1.22053 0.90340 0.96853 0.92551 1.48565 1.39071 1.19412 1.26594 1.21539 0.80052 0.81627 0.87527 1.90699 1.35384 1.74380 1.47716 1.21645 1.03484 0.94506 0.96680 1.21581 0.99808 0.95229 0.98445 1.22070 0.95747 0.83730 0.99770 1.44370 1.15644 1.12110 1.40408 1.22220 0.88208 0.99935 1.05202 1.21188 1.01610 0.95824 1.06801 1.21187 0.96167 1.01013 1.07063 1.22234 1.02413 0.86557 1.04204 1.20427 0.87358 0.97437 0.88663 0.94243 0.98044 0.91842 0.91531 0.90221 0.91896 0.93781 0.91670 0.88207 0.85636 0.90301 0.85059 0.85414 0.93205 0.92901 0.86563 0.86779 0.80569 0.84365 0.84302 0.80389 0.92144 1.00314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 11.19 21.65 0.24 -55.67 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 3 Si 0.97 44.15 29.59 68.60 2.03 46.18 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.25 -13.57 9.60 84.03 0.81 -12.76 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.60 -29.73 2.64 -700.06 -1.85 -31.58 16 10 C 0.14 5.91 6.50 86.32 0.56 6.47 16 11 C -0.12 -4.02 5.05 30.81 0.16 -3.86 16 12 C 0.16 5.59 2.66 45.07 0.12 5.71 16 13 H 0.06 2.37 7.06 -2.39 -0.02 2.35 16 14 C -0.10 -3.90 2.45 -10.87 -0.03 -3.92 16 15 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 16 C -0.10 -3.11 4.86 30.59 0.15 -2.96 16 17 C -0.13 -2.44 6.08 30.68 0.19 -2.25 16 18 C 0.10 1.65 5.85 86.34 0.51 2.16 16 19 N -0.61 -15.23 2.66 -793.23 -2.11 -17.34 16 20 C 0.50 12.81 7.71 87.66 0.68 13.48 16 21 O -0.60 -22.18 15.43 -3.04 -0.05 -22.22 16 22 C -0.12 -1.49 4.05 29.85 0.12 -1.37 16 23 C -0.11 -1.72 4.83 30.60 0.15 -1.57 16 24 C 0.11 0.99 6.09 86.38 0.53 1.51 16 25 N -0.45 -7.23 2.75 -524.47 -1.44 -8.67 16 26 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 27 C -0.23 -4.56 10.86 22.14 0.24 -4.32 16 28 C -0.23 -4.52 10.86 22.14 0.24 -4.28 16 29 C -0.02 -0.42 11.43 83.21 0.95 0.54 16 30 C 0.19 9.22 4.69 86.23 0.40 9.62 16 31 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.06 2.53 7.94 -2.39 -0.02 2.52 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.45 5.34 -2.39 -0.01 2.44 16 36 H 0.06 2.14 6.16 -2.39 -0.01 2.12 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.13 0.86 5.96 -2.38 -0.01 0.85 16 41 H 0.08 1.20 7.25 -2.39 -0.02 1.18 16 42 H 0.13 0.72 7.94 -2.39 -0.02 0.70 16 43 H 0.13 0.79 7.71 -2.39 -0.02 0.78 16 44 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 45 H 0.05 1.08 8.10 -2.39 -0.02 1.07 16 46 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 47 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 50 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 51 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 52 H 0.06 3.32 6.06 -2.39 -0.01 3.31 16 53 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 Total: -1.00 -77.41 404.83 4.83 -72.58 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.87 Total: 16.51 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 7.13 Total: 0.22 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -5.16 Total: -113.26 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -77.41 4.83 -72.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713977971.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.741 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds