Wall clock time and date at job start Wed Apr 1 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48503 * 109.46596 * 239.99121 * 3 2 1 5 5 H 1.48497 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99318 * 3 2 1 7 7 C 1.38809 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99784 * 184.47912 * 7 2 1 9 9 N 1.36942 * 119.99897 * 4.48989 * 7 2 1 10 10 C 1.46866 * 120.47025 * 144.73446 * 9 7 2 11 11 C 1.53314 * 109.10320 * 127.36216 * 10 9 7 12 12 C 1.52896 * 108.94802 * 54.10351 * 11 10 9 13 13 H 1.08997 * 109.52842 * 57.81079 * 12 11 10 14 14 C 1.53271 * 109.16400 * 297.88727 * 12 11 10 15 15 H 1.08998 * 109.47191 * 303.53934 * 14 12 11 16 16 C 1.52821 * 109.16810 * 183.72078 * 14 12 11 17 17 C 1.53144 * 109.26051 * 61.82371 * 16 14 12 18 18 C 1.53128 * 109.61711 * 299.14925 * 17 16 14 19 19 N 1.46711 * 110.29277 * 178.65130 * 12 11 10 20 20 C 1.34782 * 120.84158 * 353.95132 * 19 12 11 21 21 O 1.21280 * 120.00129 * 5.64641 * 20 19 12 22 22 C 1.50703 * 119.99798 * 185.64461 * 20 19 12 23 23 C 1.53001 * 109.47096 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47199 * 180.02562 * 23 22 20 25 25 N 1.46498 * 109.47332 * 180.02562 * 24 23 22 26 26 C 1.36339 * 125.63536 * 269.69877 * 25 24 23 27 27 C 1.34851 * 108.22037 * 179.83069 * 26 25 24 28 28 C 1.40894 * 107.41453 * 0.42215 * 27 26 25 29 29 C 1.34852 * 107.41611 * 359.73804 * 28 27 26 30 30 C 1.47063 * 120.47103 * 324.75122 * 9 7 2 31 31 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.53655 * 7.47494 * 10 9 7 33 33 H 1.08998 * 109.58913 * 247.28320 * 10 9 7 34 34 H 1.08996 * 109.55708 * 294.26424 * 11 10 9 35 35 H 1.08994 * 109.55732 * 173.93895 * 11 10 9 36 36 H 1.09003 * 109.50292 * 181.75574 * 16 14 12 37 37 H 1.08997 * 109.50878 * 301.84435 * 16 14 12 38 38 H 1.08999 * 109.45225 * 59.19293 * 17 16 14 39 39 H 1.09000 * 109.44375 * 179.13641 * 17 16 14 40 40 H 1.08995 * 109.54537 * 173.86617 * 18 17 16 41 41 H 1.09005 * 109.54362 * 294.04172 * 18 17 16 42 42 H 1.08998 * 109.47415 * 300.00024 * 22 20 19 43 43 H 1.09007 * 109.46989 * 60.00116 * 22 20 19 44 44 H 1.08998 * 109.47397 * 300.00511 * 23 22 20 45 45 H 1.09002 * 109.46359 * 60.00710 * 23 22 20 46 46 H 1.09004 * 109.47293 * 300.00919 * 24 23 22 47 47 H 1.08999 * 109.46938 * 60.00194 * 24 23 22 48 48 H 1.08007 * 125.89230 * 359.95347 * 26 25 24 49 49 H 1.07992 * 126.29744 * 180.16023 * 27 26 25 50 50 H 1.08002 * 126.29084 * 179.74154 * 28 27 26 51 51 H 1.08000 * 125.89057 * 179.97438 * 29 28 27 52 52 H 1.08999 * 109.69583 * 353.00989 * 30 9 7 53 53 H 1.08994 * 109.69365 * 113.55522 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0878 -1.2035 0.0736 9 7 1.3287 -2.3863 -0.0918 10 6 1.9012 -3.5195 -0.8299 11 6 1.8986 -4.7589 0.0726 12 6 0.4807 -4.9887 0.5963 13 1 -0.2037 -5.1052 -0.2440 14 6 0.0546 -3.7827 1.4408 15 1 0.7758 -3.6282 2.2434 16 6 -1.3250 -4.0522 2.0404 17 6 -1.2468 -5.2758 2.9580 18 6 -0.8134 -6.5000 2.1466 19 7 0.4379 -6.1887 1.4394 20 6 1.5180 -6.9854 1.5626 21 8 2.5714 -6.6615 1.0565 22 6 1.4165 -8.2789 2.3292 23 6 2.7728 -8.9868 2.3168 24 6 2.6697 -10.3003 3.0946 25 7 3.9685 -10.9779 3.0832 26 6 4.3864 -11.8788 2.1489 27 6 5.6329 -12.2768 2.4749 28 6 5.9942 -11.6041 3.6590 29 6 4.9570 -10.8163 4.0082 30 6 0.0129 -2.5411 0.5465 31 1 -0.4850 0.8400 -0.0004 32 1 2.9244 -3.2842 -1.1228 33 1 1.3033 -3.7156 -1.7199 34 1 2.5763 -4.6008 0.9115 35 1 2.2212 -5.6282 -0.5004 36 1 -1.6470 -3.1849 2.6169 37 1 -2.0392 -4.2423 1.2392 38 1 -0.5212 -5.0899 3.7498 39 1 -2.2260 -5.4615 3.3993 40 1 -0.6527 -7.3438 2.8175 41 1 -1.5894 -6.7516 1.4236 42 1 1.1251 -8.0694 3.3584 43 1 0.6682 -8.9199 1.8630 44 1 3.0639 -9.1964 1.2875 45 1 3.5213 -8.3460 2.7828 46 1 2.3783 -10.0912 4.1239 47 1 1.9213 -10.9409 2.6282 48 1 3.8179 -12.2142 1.2940 49 1 6.2407 -12.9845 1.9310 50 1 6.9300 -11.7014 4.1893 51 1 4.9161 -10.1692 4.8719 52 1 -0.2084 -1.6610 1.1502 53 1 -0.7541 -2.6642 -0.2181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713977972.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:23 Heat of formation + Delta-G solvation = 24.049954 kcal Electronic energy + Delta-G solvation = -31049.499081 eV Core-core repulsion = 27114.839758 eV Total energy + Delta-G solvation = -3934.659323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96757 -41.66384 -39.23316 -37.33108 -35.97532 -34.52420 -34.10278 -32.46116 -31.66641 -30.73572 -29.61198 -27.92864 -27.14702 -25.93195 -24.29844 -23.86423 -22.95139 -21.53803 -21.32153 -21.07951 -20.78296 -19.85269 -18.75897 -18.31123 -17.45299 -17.02579 -16.91914 -16.71771 -15.89901 -15.57487 -15.46675 -15.39402 -15.25998 -15.07361 -14.71773 -14.56959 -14.14186 -13.96159 -13.86292 -13.72763 -13.58885 -13.27614 -13.14440 -12.93363 -12.89163 -12.80755 -12.75261 -12.72351 -12.60916 -12.47390 -12.18647 -12.04585 -12.01942 -11.78348 -11.69513 -11.58915 -11.42405 -11.03942 -10.57493 -10.13434 -9.47943 -9.44953 -9.02246 -8.55662 -7.89086 -5.46295 1.41066 1.42466 1.45070 1.51812 1.72610 1.99687 2.17702 2.24896 2.46001 3.23173 3.51894 3.63005 3.82444 3.87604 3.90162 3.95834 4.01403 4.14501 4.26788 4.30447 4.32155 4.35703 4.39080 4.42607 4.49679 4.55235 4.61678 4.64743 4.73412 4.74451 4.80461 4.84050 4.87219 4.93747 4.96965 5.00801 5.03589 5.14304 5.16867 5.26072 5.34542 5.40680 5.42522 5.44896 5.47134 5.55316 5.62894 5.71279 5.82795 6.12595 6.37409 6.42555 6.58164 6.61005 7.14569 7.31785 7.81391 8.35099 9.12752 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002328 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.929544 B =12022.534133 C =13175.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.272 4.272 8 H 0.054 0.946 9 N -0.615 5.615 10 C 0.135 3.865 11 C -0.091 4.091 12 C 0.165 3.835 13 H 0.063 0.937 14 C -0.108 4.108 15 H 0.036 0.964 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.103 3.897 19 N -0.609 5.609 20 C 0.498 3.502 21 O -0.579 6.579 22 C -0.124 4.124 23 C -0.111 4.111 24 C 0.108 3.892 25 N -0.450 5.450 26 C -0.023 4.023 27 C -0.230 4.230 28 C -0.230 4.230 29 C -0.026 4.026 30 C 0.185 3.815 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.180 0.820 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.176 0.824 52 H 0.069 0.931 53 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -25.008 9.940 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.072 0.928 9 N -0.339 5.339 10 C 0.009 3.991 11 C -0.130 4.130 12 C 0.061 3.939 13 H 0.081 0.919 14 C -0.129 4.129 15 H 0.055 0.945 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.342 5.342 20 C 0.288 3.712 21 O -0.459 6.459 22 C -0.164 4.164 23 C -0.150 4.150 24 C -0.013 4.013 25 N -0.125 5.125 26 C -0.153 4.153 27 C -0.255 4.255 28 C -0.255 4.255 29 C -0.156 4.156 30 C 0.060 3.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.131 0.869 47 H 0.135 0.865 48 H 0.197 0.803 49 H 0.157 0.843 50 H 0.156 0.844 51 H 0.193 0.807 52 H 0.087 0.913 53 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -3.929 -24.535 9.677 26.665 hybrid contribution 0.912 1.677 -0.471 1.966 sum -3.017 -22.858 9.206 24.826 Atomic orbital electron populations 1.70052 1.06396 1.25929 1.54998 1.26024 0.96490 1.01256 0.99872 0.85338 0.77705 0.79115 0.78223 1.20439 1.21183 1.20385 1.19371 0.90859 0.84696 1.45315 0.92828 1.44314 1.19815 1.10276 1.59502 1.21253 0.96453 0.88227 0.93176 1.22130 0.95311 0.96612 0.98984 1.20930 0.96837 0.84184 0.91943 0.91862 1.22013 0.97600 0.95752 0.97538 0.94501 1.21462 0.95021 0.98921 0.99366 1.21895 1.03154 0.93833 0.97510 1.22094 0.84749 0.98590 0.96349 1.48388 1.13819 1.24579 1.47397 1.21497 0.82567 0.86572 0.80548 1.90771 1.30315 1.74862 1.49988 1.21658 0.99445 0.92496 1.02792 1.21571 0.96946 0.95692 1.00785 1.22068 0.82438 0.93046 1.03757 1.44368 1.14377 1.33254 1.20510 1.22235 0.97747 0.97834 0.97516 1.21189 0.97288 1.06625 1.00360 1.21190 1.00369 1.03510 1.00392 1.22206 0.89879 1.05504 0.98002 1.20761 0.85080 0.95146 0.93050 0.93772 0.93824 0.96772 0.94234 0.90926 0.92537 0.91444 0.92491 0.87508 0.85884 0.89707 0.85758 0.85198 0.92800 0.93328 0.86909 0.86545 0.80326 0.84283 0.84395 0.80664 0.91251 0.98423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 10.59 21.65 0.23 -54.87 16 2 C -0.04 -2.34 5.32 84.86 0.45 -1.89 16 3 Si 0.97 46.18 29.56 68.60 2.03 48.21 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.27 -15.99 9.54 84.03 0.80 -15.19 16 8 H 0.05 3.16 7.83 -2.91 -0.02 3.13 16 9 N -0.62 -33.40 3.01 -698.91 -2.10 -35.50 16 10 C 0.14 6.43 6.50 86.41 0.56 6.99 16 11 C -0.09 -3.79 3.79 30.66 0.12 -3.68 16 12 C 0.16 5.77 2.64 45.01 0.12 5.88 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.11 -4.15 2.21 -10.74 -0.02 -4.17 16 15 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 16 C -0.11 -3.10 5.24 30.58 0.16 -2.94 16 17 C -0.13 -2.29 6.07 30.69 0.19 -2.11 16 18 C 0.10 1.55 6.32 86.31 0.55 2.10 16 19 N -0.61 -15.48 2.97 -795.34 -2.36 -17.84 16 20 C 0.50 12.78 7.62 87.66 0.67 13.45 16 21 O -0.58 -20.91 11.53 -3.03 -0.03 -20.95 16 22 C -0.12 -1.54 4.12 29.85 0.12 -1.42 16 23 C -0.11 -1.76 4.83 30.59 0.15 -1.62 16 24 C 0.11 1.05 6.09 86.38 0.53 1.57 16 25 N -0.45 -7.50 2.75 -524.48 -1.44 -8.94 16 26 C -0.02 -0.41 11.43 83.21 0.95 0.54 16 27 C -0.23 -4.66 10.86 22.14 0.24 -4.42 16 28 C -0.23 -4.74 10.86 22.14 0.24 -4.50 16 29 C -0.03 -0.48 11.43 83.21 0.95 0.48 16 30 C 0.19 9.22 4.59 86.30 0.40 9.62 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.04 2.10 7.93 -2.39 -0.02 2.08 16 33 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.04 1.85 7.14 -2.39 -0.02 1.84 16 35 H 0.07 2.98 6.46 -2.39 -0.02 2.96 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 0.81 6.00 -2.39 -0.01 0.79 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.12 0.85 7.46 -2.39 -0.02 0.83 16 43 H 0.13 0.75 8.13 -2.38 -0.02 0.73 16 44 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 45 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 46 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 51 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 52 H 0.07 3.91 5.91 -2.39 -0.01 3.90 16 53 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -78.88 404.36 4.34 -74.54 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.86 Total: 16.67 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 7.16 Total: -1.31 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -5.68 Total: -117.16 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.03 Total: -20.95 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.88 4.34 -74.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713977972.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.588 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds