Wall clock time and date at job start Wed Apr 1 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48502 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47350 * 299.99776 * 3 2 1 6 6 H 1.48494 * 109.47082 * 60.00440 * 3 2 1 7 7 C 1.38810 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00073 * 197.32034 * 7 2 1 9 9 N 1.36931 * 120.00431 * 17.32319 * 7 2 1 10 10 C 1.46974 * 120.77985 * 207.50999 * 9 7 2 11 11 C 1.53090 * 108.61990 * 234.29705 * 10 9 7 12 12 C 1.53643 * 109.52133 * 304.74865 * 11 10 9 13 13 H 1.09009 * 110.78431 * 299.03717 * 12 11 10 14 14 C 1.52698 * 109.56961 * 60.55029 * 12 11 10 15 15 H 1.09007 * 108.45737 * 180.81556 * 14 12 11 16 16 C 1.52852 * 109.43965 * 61.71129 * 14 12 11 17 17 C 1.53121 * 109.34987 * 61.89376 * 16 14 12 18 18 C 1.53147 * 109.47371 * 299.35050 * 17 16 14 19 19 N 1.46948 * 109.02132 * 54.07917 * 18 17 16 20 20 C 1.34783 * 120.84368 * 125.95085 * 19 18 17 21 21 O 1.21283 * 119.99829 * 179.97438 * 20 19 18 22 22 C 1.50701 * 119.99858 * 359.97438 * 20 19 18 23 23 C 1.52997 * 109.46765 * 179.97438 * 22 20 19 24 24 C 1.53007 * 109.46986 * 179.97438 * 23 22 20 25 25 N 1.46498 * 109.47088 * 180.02562 * 24 23 22 26 26 C 1.36347 * 125.63391 * 269.97891 * 25 24 23 27 27 C 1.34854 * 108.21655 * 180.02562 * 26 25 24 28 28 C 1.40894 * 107.41505 * 359.97438 * 27 26 25 29 29 C 1.34844 * 107.42049 * 0.02562 * 28 27 26 30 30 C 1.46895 * 120.77414 * 27.48831 * 9 7 2 31 31 H 0.96997 * 120.00628 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.60994 * 354.03944 * 10 9 7 33 33 H 1.09006 * 109.61208 * 114.55814 * 10 9 7 34 34 H 1.08996 * 109.45156 * 64.68965 * 11 10 9 35 35 H 1.09003 * 109.44991 * 184.64486 * 11 10 9 36 36 H 1.09000 * 109.49292 * 301.93181 * 16 14 12 37 37 H 1.09000 * 109.51286 * 181.86588 * 16 14 12 38 38 H 1.08991 * 109.46911 * 179.34857 * 17 16 14 39 39 H 1.08999 * 109.46938 * 59.34822 * 17 16 14 40 40 H 1.09001 * 109.54540 * 294.21483 * 18 17 16 41 41 H 1.08999 * 109.54043 * 173.93933 * 18 17 16 42 42 H 1.08999 * 109.47364 * 59.99751 * 22 20 19 43 43 H 1.08998 * 109.46921 * 299.99739 * 22 20 19 44 44 H 1.08999 * 109.47345 * 59.99786 * 23 22 20 45 45 H 1.08998 * 109.47226 * 299.99599 * 23 22 20 46 46 H 1.09005 * 109.46411 * 60.00181 * 24 23 22 47 47 H 1.08991 * 109.47225 * 300.00348 * 24 23 22 48 48 H 1.07994 * 125.89490 * 0.02562 * 26 25 24 49 49 H 1.07998 * 126.28909 * 180.26741 * 27 26 25 50 50 H 1.08004 * 126.28543 * 179.97438 * 28 27 26 51 51 H 1.07998 * 125.89421 * 179.97438 * 29 28 27 52 52 H 1.09004 * 109.51702 * 6.76538 * 30 9 7 53 53 H 1.09000 * 109.51691 * 246.59568 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2779 9 7 1.3722 -2.3610 -0.3541 10 6 1.8194 -3.6573 0.1749 11 6 2.0855 -4.5998 -1.0017 12 6 0.8289 -4.6911 -1.8809 13 1 -0.0122 -5.0898 -1.3134 14 6 0.4825 -3.3064 -2.4234 15 1 -0.4183 -3.3895 -3.0316 16 6 1.6325 -2.7985 -3.2929 17 6 1.8211 -3.7401 -4.4855 18 6 2.1621 -5.1444 -3.9783 19 7 1.1312 -5.5718 -3.0223 20 6 0.4752 -6.7373 -3.1887 21 8 -0.3726 -7.0754 -2.3900 22 6 0.7950 -7.6204 -4.3672 23 6 -0.0838 -8.8719 -4.3200 24 6 0.2405 -9.7683 -5.5168 25 7 -0.6015 -10.9663 -5.4720 26 6 -0.2849 -12.1368 -4.8485 27 6 -1.3058 -12.9995 -5.0279 28 6 -2.2888 -12.3371 -5.7894 29 6 -1.8310 -11.0952 -6.0469 30 6 0.2246 -2.3376 -1.2708 31 1 -0.4851 0.8400 0.0004 32 1 2.7356 -3.5215 0.7495 33 1 1.0432 -4.0793 0.8134 34 1 2.9152 -4.2150 -1.5946 35 1 2.3385 -5.5903 -0.6233 36 1 2.5490 -2.7700 -2.7035 37 1 1.4009 -1.7964 -3.6538 38 1 2.6332 -3.3733 -5.1131 39 1 0.9004 -3.7778 -5.0678 40 1 3.1335 -5.1276 -3.4840 41 1 2.1908 -5.8384 -4.8183 42 1 1.8445 -7.9122 -4.3284 43 1 0.6033 -7.0760 -5.2918 44 1 -1.1334 -8.5805 -4.3586 45 1 0.1084 -9.4162 -3.3954 46 1 1.2901 -10.0597 -5.4785 47 1 0.0481 -9.2238 -6.4412 48 1 0.6262 -12.3384 -4.3049 49 1 -1.3617 -14.0106 -4.6523 50 1 -3.2348 -12.7488 -6.1089 51 1 -2.3489 -10.3338 -6.6113 52 1 0.0937 -1.3297 -1.6647 53 1 -0.6753 -2.6400 -0.7353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713977974.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:30 Heat of formation + Delta-G solvation = 13.347903 kcal Electronic energy + Delta-G solvation = -30955.054091 eV Core-core repulsion = 27019.930693 eV Total energy + Delta-G solvation = -3935.123398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.95688 -41.61736 -39.59524 -37.09921 -35.92107 -34.37003 -33.93306 -32.40741 -31.70394 -31.05166 -29.61103 -27.94147 -27.17371 -26.07020 -24.25762 -23.52197 -23.12327 -22.64972 -21.31966 -20.79904 -20.28544 -19.39518 -18.55685 -18.36156 -17.82206 -16.97371 -16.90240 -16.71516 -16.03037 -15.64369 -15.49148 -15.40292 -15.14195 -15.01716 -14.63401 -14.49167 -14.29930 -14.09385 -13.90663 -13.81082 -13.56638 -13.31087 -13.22854 -12.96800 -12.92287 -12.87643 -12.74483 -12.61766 -12.60752 -12.45279 -12.14858 -11.99024 -11.82766 -11.79738 -11.75980 -11.43172 -11.32228 -11.08682 -10.70692 -10.54584 -9.52112 -9.47564 -9.02149 -8.70843 -7.87579 -5.32749 1.40971 1.45954 1.48130 1.58457 1.67581 1.96509 2.17895 2.23648 2.50842 3.28268 3.49099 3.62367 3.80848 3.82138 3.90814 3.95749 4.02207 4.12948 4.22538 4.26392 4.31195 4.34892 4.39180 4.42849 4.46166 4.55177 4.60327 4.64081 4.71413 4.72931 4.74070 4.81571 4.89402 4.95670 4.99034 5.01662 5.04055 5.12565 5.16206 5.22339 5.25174 5.30956 5.42707 5.45508 5.47270 5.59254 5.63053 5.67525 5.70378 6.12756 6.37479 6.37547 6.55129 6.59266 7.13008 7.23445 7.83180 8.37387 9.19643 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028752 B = 0.002024 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.603493 B =13828.533287 C =14034.683902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.252 4.252 8 H 0.072 0.928 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.161 3.839 13 H 0.056 0.944 14 C -0.104 4.104 15 H 0.050 0.950 16 C -0.099 4.099 17 C -0.126 4.126 18 C 0.103 3.897 19 N -0.605 5.605 20 C 0.502 3.498 21 O -0.600 6.600 22 C -0.123 4.123 23 C -0.112 4.112 24 C 0.108 3.892 25 N -0.450 5.450 26 C -0.024 4.024 27 C -0.230 4.230 28 C -0.230 4.230 29 C -0.025 4.025 30 C 0.187 3.813 31 H 0.248 0.752 32 H 0.064 0.936 33 H 0.002 0.998 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.179 0.821 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.177 0.823 52 H 0.061 0.939 53 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -19.392 -17.993 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.225 1.225 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.015 3.985 11 C -0.161 4.161 12 C 0.057 3.943 13 H 0.074 0.926 14 C -0.125 4.125 15 H 0.068 0.932 16 C -0.137 4.137 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.336 5.336 20 C 0.293 3.707 21 O -0.482 6.482 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.013 4.013 25 N -0.125 5.125 26 C -0.154 4.154 27 C -0.254 4.254 28 C -0.254 4.254 29 C -0.156 4.156 30 C 0.061 3.939 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.020 0.980 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.196 0.804 49 H 0.157 0.843 50 H 0.156 0.844 51 H 0.194 0.806 52 H 0.079 0.921 53 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges 6.421 -19.136 -17.600 26.780 hybrid contribution -0.696 1.284 0.998 1.769 sum 5.725 -17.851 -16.602 25.041 Atomic orbital electron populations 1.70210 1.06857 1.25704 1.55781 1.25799 0.95917 1.01566 1.01482 0.85224 0.78843 0.79918 0.76576 1.18640 1.21726 1.22456 1.19520 0.92947 0.85591 1.40132 0.91073 1.44235 1.35351 1.02021 1.50743 1.21010 0.97363 0.86100 0.94068 1.22243 0.97521 0.98985 0.97313 1.20909 0.97240 0.89050 0.87078 0.92575 1.21696 0.98554 0.94752 0.97472 0.93157 1.21350 0.97902 0.98188 0.96213 1.21930 1.03054 0.94533 0.96920 1.22056 0.90400 0.96687 0.92655 1.48568 1.39176 1.19534 1.26363 1.21541 0.80010 0.81555 0.87639 1.90699 1.35463 1.73932 1.48083 1.21643 1.03521 0.94643 0.96506 1.21583 0.99831 0.95274 0.98385 1.22071 0.95847 0.83718 0.99683 1.44371 1.15457 1.11797 1.40910 1.22235 1.02428 0.86408 1.04330 1.21190 0.96189 1.00960 1.07094 1.21187 1.01614 0.95616 1.06998 1.22215 0.88130 0.99834 1.05385 1.20434 0.87333 0.97569 0.88591 0.94242 0.91796 0.98011 0.90201 0.91599 0.91825 0.93790 0.88185 0.91689 0.90280 0.85628 0.85060 0.85410 0.93207 0.92898 0.86553 0.86786 0.80385 0.84300 0.84364 0.80580 0.92069 1.00316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 11.18 21.65 0.24 -55.67 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 3 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -13.47 9.60 84.03 0.81 -12.66 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 9 N -0.60 -29.71 2.64 -700.06 -1.85 -31.56 16 10 C 0.14 5.89 6.52 86.32 0.56 6.46 16 11 C -0.12 -4.02 5.03 30.84 0.16 -3.87 16 12 C 0.16 5.57 2.66 44.95 0.12 5.68 16 13 H 0.06 2.37 7.06 -2.38 -0.02 2.35 16 14 C -0.10 -3.89 2.43 -11.02 -0.03 -3.92 16 15 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 16 C -0.10 -3.08 4.86 30.59 0.15 -2.93 16 17 C -0.13 -2.44 6.08 30.68 0.19 -2.26 16 18 C 0.10 1.65 5.86 86.34 0.51 2.15 16 19 N -0.61 -15.22 2.66 -793.85 -2.11 -17.33 16 20 C 0.50 12.80 7.71 87.66 0.68 13.48 16 21 O -0.60 -22.17 15.43 -3.04 -0.05 -22.22 16 22 C -0.12 -1.49 4.05 29.85 0.12 -1.37 16 23 C -0.11 -1.72 4.83 30.60 0.15 -1.57 16 24 C 0.11 0.99 6.09 86.38 0.53 1.51 16 25 N -0.45 -7.23 2.75 -524.48 -1.44 -8.67 16 26 C -0.02 -0.41 11.43 83.21 0.95 0.54 16 27 C -0.23 -4.52 10.86 22.14 0.24 -4.28 16 28 C -0.23 -4.56 10.86 22.14 0.24 -4.31 16 29 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 30 C 0.19 9.19 4.70 86.23 0.41 9.60 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.06 2.55 7.94 -2.38 -0.02 2.53 16 33 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.08 2.46 5.32 -2.39 -0.01 2.44 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.16 6.15 -2.39 -0.01 2.14 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.20 7.25 -2.39 -0.02 1.18 16 41 H 0.13 0.86 5.96 -2.39 -0.01 0.85 16 42 H 0.13 0.72 7.94 -2.39 -0.02 0.70 16 43 H 0.13 0.79 7.71 -2.39 -0.02 0.78 16 44 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 45 H 0.05 1.08 8.10 -2.39 -0.02 1.07 16 46 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 49 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 50 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 51 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 52 H 0.06 3.37 6.04 -2.38 -0.01 3.35 16 53 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 Total: -1.00 -77.41 404.76 4.83 -72.58 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.87 Total: 16.41 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 7.13 Total: 0.26 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -5.16 Total: -113.22 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.41 4.83 -72.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713977974.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.927 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds