Wall clock time and date at job start Wed Apr 1 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47237 * 240.00303 * 3 2 1 5 5 H 1.48507 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47454 * 120.00120 * 3 2 1 7 7 C 1.38815 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64971 * 14.64940 * 9 7 2 11 11 C 1.54908 * 104.83405 * 155.90323 * 10 9 7 12 12 C 1.55149 * 101.58153 * 37.01132 * 11 10 9 13 13 C 1.47023 * 125.65028 * 194.68515 * 9 7 2 14 14 H 1.09007 * 109.88090 * 300.44703 * 13 9 7 15 15 C 1.52999 * 109.87930 * 61.45423 * 13 9 7 16 16 C 1.53002 * 109.46895 * 185.12435 * 15 13 9 17 17 C 1.53005 * 109.47040 * 174.93436 * 16 15 13 18 18 N 1.46504 * 109.46979 * 180.02562 * 17 16 15 19 19 C 1.34770 * 119.99978 * 179.97438 * 18 17 16 20 20 O 1.21706 * 120.00019 * 359.97438 * 19 18 17 21 21 C 1.46674 * 120.00525 * 179.97438 * 19 18 17 22 22 C 1.38051 * 126.21172 * 180.02562 * 21 19 18 23 23 C 1.39245 * 106.97938 * 179.97438 * 22 21 19 24 24 C 1.35969 * 108.03850 * 0.02982 * 23 22 21 25 25 N 1.35113 * 108.76237 * 359.68575 * 24 23 22 26 26 H 0.97004 * 125.68356 * 180.34524 * 25 24 23 27 27 C 1.51016 * 123.84829 * 179.89614 * 24 23 22 28 28 C 1.53319 * 108.41290 * 343.29580 * 27 24 23 29 29 C 1.53110 * 109.53226 * 50.17653 * 28 27 24 30 30 C 1.50835 * 127.70475 * 180.08488 * 23 22 21 31 31 H 0.96995 * 120.00670 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.36954 * 37.06040 * 10 9 7 33 33 H 1.09001 * 110.46128 * 274.78754 * 10 9 7 34 34 H 1.09007 * 111.00331 * 155.08479 * 11 10 9 35 35 H 1.08997 * 111.00466 * 278.92980 * 11 10 9 36 36 H 1.08995 * 110.72298 * 82.86082 * 12 11 10 37 37 H 1.09007 * 110.72213 * 206.13466 * 12 11 10 38 38 H 1.09003 * 109.47529 * 305.12256 * 15 13 9 39 39 H 1.08996 * 109.47435 * 65.12783 * 15 13 9 40 40 H 1.08996 * 109.47079 * 294.93266 * 16 15 13 41 41 H 1.09001 * 109.47384 * 54.93304 * 16 15 13 42 42 H 1.08998 * 109.46949 * 299.99315 * 17 16 15 43 43 H 1.08991 * 109.47259 * 59.99857 * 17 16 15 44 44 H 0.96998 * 119.99770 * 359.97438 * 18 17 16 45 45 H 1.08002 * 126.50869 * 359.97438 * 22 21 19 46 46 H 1.08996 * 109.67877 * 223.56609 * 27 24 23 47 47 H 1.08998 * 109.70692 * 103.04199 * 27 24 23 48 48 H 1.09004 * 109.46202 * 290.15838 * 28 27 24 49 49 H 1.08999 * 109.46491 * 170.19649 * 28 27 24 50 50 H 1.09000 * 109.46964 * 169.60850 * 29 28 27 51 51 H 1.08996 * 109.47176 * 49.60278 * 29 28 27 52 52 H 1.08998 * 109.68384 * 283.17204 * 30 23 22 53 53 H 1.09001 * 109.67979 * 43.68712 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1076 -2.5526 -0.3030 11 6 -0.2473 -4.0215 -0.7748 12 6 0.7645 -4.7442 0.1532 13 6 1.8983 -3.7080 0.3018 14 1 2.7011 -3.9335 -0.4003 15 6 2.4390 -3.7251 1.7330 16 6 3.1454 -5.0567 1.9953 17 6 3.7946 -5.0254 3.3805 18 7 4.4715 -6.3002 3.6314 19 6 5.1179 -6.5020 4.7966 20 8 5.1398 -5.6250 5.6402 21 6 5.7951 -7.7785 5.0482 22 6 6.4912 -8.1212 6.1901 23 6 6.9662 -9.4168 6.0033 24 6 6.5634 -9.8399 4.7755 25 7 5.8464 -8.8556 4.1902 26 1 5.4377 -8.8991 3.3115 27 6 6.8871 -11.2010 4.2069 28 6 8.0388 -11.8040 5.0196 29 6 7.7148 -11.7115 6.5132 30 6 7.7842 -10.2465 6.9611 31 1 -0.4851 0.8399 0.0004 32 1 -0.4089 -1.8689 -1.0967 33 1 -0.7077 -2.3827 0.5910 34 1 -1.2600 -4.3899 -0.6108 35 1 0.0395 -4.1246 -1.8213 36 1 0.3125 -4.9627 1.1206 37 1 1.1345 -5.6561 -0.3156 38 1 3.1467 -2.9065 1.8639 39 1 1.6134 -3.6074 2.4348 40 1 2.4187 -5.8680 1.9530 41 1 3.9128 -5.2164 1.2379 42 1 4.5214 -4.2142 3.4228 43 1 3.0273 -4.8657 4.1379 44 1 4.4544 -6.9990 2.9589 45 1 6.6393 -7.5021 7.0625 46 1 7.1869 -11.1012 3.1637 47 1 6.0114 -11.8463 4.2768 48 1 8.9566 -11.2536 4.8124 49 1 8.1718 -12.8493 4.7409 50 1 8.4377 -12.2993 7.0789 51 1 6.7119 -12.0991 6.6920 52 1 8.8201 -9.9074 6.9484 53 1 7.3790 -10.1505 7.9684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714532906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:58 Heat of formation + Delta-G solvation = -21.584780 kcal Electronic energy + Delta-G solvation = -29335.267519 eV Core-core repulsion = 25398.629326 eV Total energy + Delta-G solvation = -3936.638193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.61339 -40.43334 -39.46038 -37.16419 -36.78254 -34.72192 -33.74693 -33.11383 -31.28260 -30.54069 -29.87672 -29.08214 -26.69640 -25.99914 -24.55852 -23.28215 -22.78639 -22.25295 -21.87825 -21.17802 -20.71227 -19.46086 -19.33561 -18.69729 -17.12573 -16.98889 -16.81641 -16.77538 -16.12008 -16.01394 -15.68661 -15.52679 -15.02340 -14.80291 -14.66860 -14.50151 -14.33051 -13.98816 -13.89795 -13.70887 -13.59377 -13.49365 -13.26599 -13.16003 -13.00994 -12.75155 -12.68674 -12.64264 -12.28196 -12.05078 -11.87104 -11.70641 -11.64860 -11.56582 -11.54559 -11.34935 -11.33568 -11.28016 -11.13217 -10.65162 -10.30909 -9.80840 -8.92406 -8.78050 -7.86118 -5.21700 0.37682 1.43058 1.45951 1.51758 1.65575 1.94687 2.12285 2.29492 2.49088 3.32147 3.67783 3.74410 3.82576 3.92985 3.98443 3.99090 4.09968 4.14532 4.18777 4.23633 4.33135 4.39188 4.40747 4.54131 4.60452 4.68286 4.71700 4.73916 4.77903 4.80402 4.82551 4.96405 4.98755 5.01945 5.10234 5.11325 5.13961 5.20765 5.23296 5.27043 5.32472 5.35139 5.38558 5.49729 5.50220 5.54741 5.67385 5.69527 5.79647 5.83507 5.91026 6.27232 6.38760 6.56289 7.06857 7.12390 7.82269 8.49334 9.25205 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.001721 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.921538 B =16268.661813 C =17193.190876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.111 4.111 13 C 0.152 3.848 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.125 3.875 18 N -0.712 5.712 19 C 0.584 3.416 20 O -0.581 6.581 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.194 4.194 24 C 0.066 3.934 25 N -0.517 5.517 26 H 0.429 0.571 27 C -0.053 4.053 28 C -0.113 4.113 29 C -0.118 4.118 30 C -0.049 4.049 31 H 0.246 0.754 32 H 0.029 0.971 33 H -0.010 1.010 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.412 0.588 45 H 0.133 0.867 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.070 0.930 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.154 -31.190 6.963 34.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.343 5.343 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.149 4.149 13 C 0.046 3.954 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.145 4.145 17 C 0.001 3.999 18 N -0.364 5.364 19 C 0.373 3.627 20 O -0.462 6.462 21 C -0.190 4.190 22 C -0.144 4.144 23 C -0.199 4.199 24 C -0.053 4.053 25 N -0.114 5.114 26 H 0.270 0.730 27 C -0.091 4.091 28 C -0.151 4.151 29 C -0.155 4.155 30 C -0.087 4.087 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.008 0.992 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.248 0.752 45 H 0.151 0.849 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.098 0.902 51 H 0.082 0.918 52 H 0.089 0.911 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.000 -30.274 7.357 34.157 hybrid contribution -0.211 1.902 -0.344 1.944 sum 13.790 -28.373 7.014 32.316 Atomic orbital electron populations 1.70137 1.06279 1.25221 1.58133 1.25677 0.96504 1.00958 1.02763 0.85277 0.77287 0.79394 0.78159 1.20184 1.22118 1.20691 1.19247 0.90669 0.83776 1.42448 0.90692 1.44843 1.06571 1.02581 1.80323 1.21202 0.84681 0.93201 0.96013 1.22881 0.99752 0.95670 0.99265 1.22585 0.95177 0.97349 0.99742 1.21224 0.95211 0.85465 0.93507 0.94589 1.21826 0.98939 0.96474 0.98084 1.21631 1.00294 0.98095 0.94435 1.21315 0.95766 0.84802 0.97983 1.45720 1.54251 1.18428 1.17969 1.17375 0.77857 0.85618 0.81819 1.90831 1.63075 1.45389 1.46885 1.20047 1.13517 0.89986 0.95488 1.21167 0.99490 0.96680 0.97090 1.19591 1.07774 0.95307 0.97265 1.21049 0.97518 0.92733 0.94044 1.41634 1.41738 1.11085 1.16899 0.73036 1.20509 1.00372 0.88003 1.00196 1.21552 0.97228 1.01870 0.94412 1.21601 1.02442 0.95015 0.96453 1.20129 0.98132 0.93989 0.96459 0.94513 0.95268 0.99166 0.90123 0.91718 0.91128 0.88365 0.94504 0.93993 0.88997 0.89925 0.93118 0.92659 0.75186 0.84913 0.88741 0.88596 0.91804 0.89046 0.90202 0.91767 0.91130 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.58 21.65 0.23 -58.03 16 2 C -0.07 -3.82 5.47 84.86 0.46 -3.36 16 3 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.23 -13.07 9.70 84.04 0.82 -12.25 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -31.40 3.13 -668.27 -2.09 -33.49 16 10 C 0.17 8.63 5.41 86.86 0.47 9.10 16 11 C -0.14 -4.84 7.08 31.98 0.23 -4.61 16 12 C -0.11 -3.32 5.71 31.78 0.18 -3.14 16 13 C 0.15 5.76 3.16 45.34 0.14 5.91 16 14 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 15 C -0.11 -3.92 4.72 30.59 0.14 -3.77 16 16 C -0.11 -2.45 5.10 30.60 0.16 -2.29 16 17 C 0.13 3.23 5.67 86.38 0.49 3.72 16 18 N -0.71 -14.98 5.55 -467.08 -2.59 -17.57 16 19 C 0.58 15.94 7.79 86.45 0.67 16.61 16 20 O -0.58 -21.55 16.88 -4.37 -0.07 -21.63 16 21 C -0.08 -1.73 7.06 40.36 0.29 -1.44 16 22 C -0.12 -2.72 10.62 22.47 0.24 -2.48 16 23 C -0.19 -3.39 5.91 -20.11 -0.12 -3.51 16 24 C 0.07 0.88 7.02 41.63 0.29 1.17 16 25 N -0.52 -7.06 5.98 -171.31 -1.02 -8.09 16 26 H 0.43 2.87 8.19 -92.71 -0.76 2.11 16 27 C -0.05 -0.32 6.30 30.06 0.19 -0.13 16 28 C -0.11 -0.62 5.89 30.74 0.18 -0.44 16 29 C -0.12 -0.89 5.90 30.75 0.18 -0.71 16 30 C -0.05 -0.62 6.28 30.01 0.19 -0.43 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.03 1.64 6.93 -2.39 -0.02 1.62 16 33 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.01 7.78 -2.39 -0.02 2.00 16 37 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 39 H 0.04 1.58 8.03 -2.39 -0.02 1.56 16 40 H 0.09 1.68 7.65 -2.39 -0.02 1.66 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.41 5.25 7.60 -92.71 -0.70 4.55 16 45 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 46 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.06 0.44 8.11 -2.39 -0.02 0.42 16 49 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 50 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.06 0.51 8.11 -2.39 -0.02 0.49 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.01 416.13 1.11 -77.90 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.56 Total: 13.97 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.20 Total: -2.04 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.48 Total: -117.18 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.63 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.01 1.11 -77.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714532906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.314 kcal (2) G-P(sol) polarization free energy of solvation -79.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds