Wall clock time and date at job start Wed Apr 1 2020 03:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99385 * 2 1 4 4 H 1.48507 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47523 * 299.99700 * 3 2 1 6 6 H 1.48500 * 109.47447 * 60.00279 * 3 2 1 7 7 C 1.38812 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99395 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00085 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47172 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47452 * 55.00143 * 11 10 9 13 13 C 1.53002 * 109.46972 * 294.99684 * 11 10 9 14 14 C 1.52996 * 109.46972 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 11 16 16 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 17 17 C 1.52997 * 109.47131 * 175.00143 * 11 10 9 18 18 H 1.09001 * 109.47502 * 60.00153 * 17 11 10 19 19 N 1.46500 * 109.47007 * 299.99777 * 17 11 10 20 20 C 1.34773 * 119.99910 * 155.00372 * 19 17 11 21 21 O 1.21624 * 120.00364 * 359.97438 * 20 19 17 22 22 C 1.47266 * 120.00104 * 179.97438 * 20 19 17 23 23 C 1.46745 * 126.92645 * 179.97438 * 22 20 19 24 24 C 1.34071 * 106.31185 * 180.02562 * 23 22 20 25 25 N 1.37080 * 109.04073 * 0.02623 * 24 23 22 26 26 C 1.34580 * 109.95102 * 359.68097 * 25 24 23 27 27 C 1.47028 * 123.95213 * 179.88044 * 25 24 23 28 28 C 1.53143 * 108.84093 * 342.47437 * 27 25 24 29 29 C 1.53121 * 109.59375 * 51.19894 * 28 27 25 30 30 C 1.51085 * 126.72602 * 180.02562 * 24 23 22 31 31 H 0.96997 * 120.00185 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99778 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47236 * 60.00051 * 10 9 7 34 34 H 1.09007 * 109.47365 * 300.00098 * 10 9 7 35 35 H 1.08996 * 109.47407 * 300.00487 * 13 11 10 36 36 H 1.09000 * 109.46986 * 60.00258 * 13 11 10 37 37 H 1.09001 * 109.46993 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47380 * 299.99696 * 14 13 11 39 39 H 1.09002 * 109.47153 * 179.97438 * 15 14 13 40 40 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 41 41 H 1.08993 * 109.47839 * 300.00447 * 16 15 14 42 42 H 1.09000 * 109.47160 * 180.02562 * 16 15 14 43 43 H 0.96995 * 120.00293 * 334.99551 * 19 17 11 44 44 H 1.08001 * 126.84518 * 359.97438 * 23 22 20 45 45 H 1.07997 * 125.72872 * 180.36103 * 26 25 24 46 46 H 1.09003 * 109.57402 * 102.27818 * 27 25 24 47 47 H 1.09004 * 109.57994 * 222.66008 * 27 25 24 48 48 H 1.09000 * 109.45549 * 171.24393 * 28 27 25 49 49 H 1.09006 * 109.44449 * 291.16811 * 28 27 25 50 50 H 1.09004 * 109.52077 * 49.73937 * 29 28 27 51 51 H 1.09001 * 109.52889 * 169.86705 * 29 28 27 52 52 H 1.08998 * 109.71934 * 283.90083 * 30 24 23 53 53 H 1.08998 * 109.72504 * 44.55319 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.3803 -4.7127 -0.8432 13 6 0.2689 -4.8115 1.3059 14 6 -0.7257 -5.9741 1.3050 15 6 0.0348 -7.2957 1.1790 16 6 0.8299 -7.3039 -0.1281 17 6 1.8251 -6.1410 -0.1269 18 1 2.5089 -6.2481 0.7152 19 7 2.5865 -6.1489 -1.3784 20 6 3.6862 -6.9196 -1.4933 21 8 4.0467 -7.6082 -0.5579 22 6 4.4513 -6.9279 -2.7516 23 6 5.6630 -7.7033 -3.0414 24 6 6.0121 -7.4000 -4.2999 25 7 5.1128 -6.4992 -4.8087 26 6 4.1727 -6.2186 -3.8874 27 6 5.1876 -5.9424 -6.1674 28 6 6.5987 -6.1686 -6.7176 29 6 6.9837 -7.6416 -6.5537 30 6 7.1966 -7.9429 -5.0647 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 2.6849 -3.7145 0.8894 34 1 2.6850 -3.7145 -0.8906 35 1 0.9527 -4.9185 2.1479 36 1 -0.2732 -3.8702 1.3955 37 1 -1.2925 -5.9680 2.2360 38 1 -1.4095 -5.8666 0.4631 39 1 -0.6738 -8.1240 1.1788 40 1 0.7184 -7.4032 2.0210 41 1 0.1462 -7.1965 -0.9701 42 1 1.3713 -8.2457 -0.2181 43 1 2.2993 -5.5995 -2.1244 44 1 6.1726 -8.3823 -2.3738 45 1 3.3395 -5.5447 -4.0216 46 1 4.4613 -6.4430 -6.8077 47 1 4.9745 -4.8738 -6.1365 48 1 6.6234 -5.9023 -7.7743 49 1 7.3059 -5.5456 -6.1700 50 1 6.1845 -8.2724 -6.9430 51 1 7.9046 -7.8406 -7.1019 52 1 8.1104 -7.4600 -4.7186 53 1 7.2694 -9.0199 -4.9141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716521673.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:45 Heat of formation + Delta-G solvation = -28.116449 kcal Electronic energy + Delta-G solvation = -30629.856849 eV Core-core repulsion = 26692.935422 eV Total energy + Delta-G solvation = -3936.921428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.49725 -40.95174 -39.14979 -36.70178 -36.41471 -35.13118 -33.68419 -33.64257 -31.31934 -31.21572 -29.69325 -28.36649 -26.96815 -25.44744 -24.72374 -24.05717 -22.75055 -22.27490 -21.97645 -21.20043 -20.36569 -19.56021 -19.21413 -18.22870 -17.22550 -17.06389 -16.73133 -16.52111 -15.90190 -15.72276 -15.46971 -15.21651 -15.12552 -15.06832 -14.83668 -14.73629 -14.56176 -14.42664 -14.38201 -14.03518 -13.71262 -13.44111 -13.34281 -13.16519 -12.95055 -12.76402 -12.66142 -12.44473 -12.18527 -12.07503 -11.94503 -11.91883 -11.86047 -11.78530 -11.70542 -11.51574 -11.33957 -11.12599 -10.97593 -10.79455 -10.00130 -9.49906 -9.11513 -8.98490 -7.95315 -5.23381 0.77442 1.44179 1.46028 1.47167 1.57010 1.88420 2.32806 2.55063 2.61463 3.37844 3.56868 3.60179 3.73462 3.79102 3.82248 3.90106 3.95107 4.08518 4.10989 4.17870 4.27646 4.39021 4.39957 4.46184 4.49104 4.49593 4.52247 4.57371 4.57978 4.62173 4.84504 4.86640 4.89523 4.90011 4.97203 5.05868 5.05903 5.10983 5.14170 5.17159 5.21186 5.26280 5.30930 5.32092 5.32579 5.44977 5.48644 5.53889 5.64764 5.79529 6.08744 6.27237 6.33895 6.68927 7.34232 7.38001 8.08831 8.35075 9.28028 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008008 B = 0.003066 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.834559 B = 9129.524064 C =11975.398365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.161 3.839 11 C -0.083 4.083 12 H 0.081 0.919 13 C -0.105 4.105 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.117 4.117 17 C 0.163 3.837 18 H 0.062 0.938 19 N -0.712 5.712 20 C 0.588 3.412 21 O -0.596 6.596 22 C -0.262 4.262 23 C -0.174 4.174 24 C 0.018 3.982 25 N -0.436 5.436 26 C 0.062 3.938 27 C 0.090 3.910 28 C -0.132 4.132 29 C -0.121 4.121 30 C -0.053 4.053 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.001 0.999 34 H 0.022 0.978 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.407 0.593 44 H 0.134 0.866 45 H 0.191 0.809 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.086 0.914 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -18.463 -16.044 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.102 4.102 12 H 0.099 0.901 13 C -0.144 4.144 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.156 4.156 17 C 0.058 3.942 18 H 0.080 0.920 19 N -0.362 5.362 20 C 0.378 3.622 21 O -0.478 6.478 22 C -0.272 4.272 23 C -0.197 4.197 24 C -0.091 4.091 25 N -0.112 5.112 26 C -0.075 4.075 27 C -0.029 4.029 28 C -0.170 4.170 29 C -0.158 4.158 30 C -0.091 4.091 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.019 0.981 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.243 0.757 44 H 0.152 0.848 45 H 0.208 0.792 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.129 0.871 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.113 0.887 52 H 0.104 0.896 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.110 -18.699 -15.749 26.090 hybrid contribution -0.131 1.485 0.326 1.526 sum 8.979 -17.213 -15.423 24.795 Atomic orbital electron populations 1.69805 1.06378 1.25991 1.59426 1.25484 0.96388 1.00762 1.03659 0.85130 0.78065 0.80070 0.76832 1.19568 1.21602 1.22064 1.19590 0.91228 0.85533 1.41277 0.91434 1.42499 1.05611 1.00727 1.89235 1.20734 0.93644 0.85139 0.97031 1.21413 0.96757 0.92338 0.99706 0.90076 1.21442 0.97942 0.99023 0.95951 1.21532 0.97340 0.93413 1.02701 1.21473 0.98869 0.97884 0.96611 1.21829 0.97398 0.97019 0.99344 1.20821 0.92376 0.94604 0.86377 0.92009 1.45836 1.27390 1.46072 1.16928 1.17742 0.79439 0.78314 0.86659 1.90692 1.70408 1.44774 1.41914 1.20399 1.02565 1.09624 0.94617 1.21605 0.97796 1.04335 0.96012 1.20723 0.96622 0.97520 0.94222 1.44208 1.20393 1.33605 1.12969 1.22098 0.95817 1.01353 0.88256 1.22482 1.00733 1.00709 0.78978 1.21886 0.94054 0.97629 1.03410 1.21646 1.03473 0.95913 0.94804 1.20501 0.92657 1.01582 0.94314 0.93929 0.79013 0.98080 0.96004 0.92889 0.92856 0.90870 0.91216 0.89852 0.92448 0.90584 0.92681 0.75740 0.84771 0.79163 0.88136 0.88017 0.87064 0.91435 0.91273 0.88677 0.89574 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -37.63 5.33 -343.46 -1.83 -39.46 16 10 C 0.16 6.73 5.57 86.38 0.48 7.21 16 11 C -0.08 -2.71 1.80 -10.79 -0.02 -2.73 16 12 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 13 C -0.11 -3.37 5.08 30.59 0.16 -3.21 16 14 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 15 C -0.11 -2.54 5.92 30.59 0.18 -2.35 16 16 C -0.12 -3.01 5.50 30.61 0.17 -2.84 16 17 C 0.16 4.97 1.90 45.01 0.09 5.06 16 18 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 19 N -0.71 -20.81 4.29 -445.86 -1.91 -22.72 16 20 C 0.59 19.81 7.77 86.62 0.67 20.49 16 21 O -0.60 -24.61 16.63 -4.11 -0.07 -24.68 16 22 C -0.26 -7.56 6.29 -19.02 -0.12 -7.68 16 23 C -0.17 -4.74 10.88 23.54 0.26 -4.49 16 24 C 0.02 0.37 6.53 40.91 0.27 0.63 16 25 N -0.44 -7.98 3.11 -507.84 -1.58 -9.56 16 26 C 0.06 1.35 10.90 83.93 0.91 2.26 16 27 C 0.09 0.91 6.89 86.33 0.59 1.50 16 28 C -0.13 -0.95 5.91 30.68 0.18 -0.77 16 29 C -0.12 -0.92 5.96 30.77 0.18 -0.74 16 30 C -0.05 -0.67 6.26 30.11 0.19 -0.48 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.38 20.08 6.85 -92.71 -0.63 19.45 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.02 0.91 7.30 -2.38 -0.02 0.89 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.98 7.18 -2.39 -0.02 1.96 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.41 10.15 7.33 -92.71 -0.68 9.47 16 44 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 45 H 0.19 3.12 7.45 -2.91 -0.02 3.10 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.07 0.63 8.11 -2.38 -0.02 0.61 16 50 H 0.07 0.54 8.12 -2.38 -0.02 0.53 16 51 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.11 414.11 2.18 -73.93 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.42 Total: 39.68 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.68 Total: -7.33 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -5.04 Total: -130.01 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.11 2.18 -73.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716521673.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.817 kcal (2) G-P(sol) polarization free energy of solvation -76.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds