Wall clock time and date at job start Wed Apr 1 2020 03:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47225 * 240.00301 * 3 2 1 5 5 H 1.48505 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47011 * 119.99772 * 3 2 1 7 7 C 1.38815 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99602 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46839 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47403 * 54.99864 * 11 10 9 13 13 C 1.53004 * 109.47442 * 295.00049 * 11 10 9 14 14 C 1.53000 * 109.47442 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46943 * 59.99632 * 14 13 11 16 16 C 1.52996 * 109.47538 * 300.00260 * 15 14 13 17 17 C 1.52999 * 109.47242 * 174.99905 * 11 10 9 18 18 H 1.09004 * 109.47046 * 60.00227 * 17 11 10 19 19 N 1.46490 * 109.47184 * 300.00293 * 17 11 10 20 20 C 1.34780 * 120.00556 * 154.99840 * 19 17 11 21 21 O 1.21287 * 119.99223 * 359.97438 * 20 19 17 22 22 C 1.50695 * 120.00418 * 179.97438 * 20 19 17 23 23 C 1.53006 * 109.46824 * 179.97438 * 22 20 19 24 24 C 1.53007 * 109.46623 * 179.97438 * 23 22 20 25 25 C 1.50701 * 109.46890 * 179.97438 * 24 23 22 26 26 C 1.38220 * 119.61936 * 124.99945 * 25 24 23 27 27 C 1.38628 * 119.16326 * 180.02562 * 26 25 24 28 28 C 1.38675 * 118.42013 * 359.97438 * 27 26 25 29 29 C 1.38177 * 119.16109 * 359.97438 * 28 27 26 30 30 N 1.31857 * 119.61866 * 305.00102 * 25 24 23 31 31 H 0.97001 * 120.00076 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00343 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47175 * 60.00888 * 10 9 7 34 34 H 1.08996 * 109.47151 * 299.99916 * 10 9 7 35 35 H 1.09001 * 109.47014 * 300.00675 * 13 11 10 36 36 H 1.09006 * 109.46774 * 60.00181 * 13 11 10 37 37 H 1.09000 * 109.47207 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.46915 * 300.00003 * 14 13 11 39 39 H 1.09004 * 109.47012 * 60.00431 * 15 14 13 40 40 H 1.09007 * 109.47065 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.46710 * 299.99758 * 16 15 14 42 42 H 1.09006 * 109.46960 * 179.97438 * 16 15 14 43 43 H 0.97002 * 120.00400 * 334.99176 * 19 17 11 44 44 H 1.09001 * 109.47394 * 60.00225 * 22 20 19 45 45 H 1.08997 * 109.47300 * 299.99722 * 22 20 19 46 46 H 1.08993 * 109.47078 * 60.00203 * 23 22 20 47 47 H 1.08998 * 109.46965 * 299.99396 * 23 22 20 48 48 H 1.08993 * 109.47159 * 60.00336 * 24 23 22 49 49 H 1.08998 * 109.47026 * 299.99443 * 24 23 22 50 50 H 1.07996 * 120.41923 * 0.02568 * 26 25 24 51 51 H 1.07998 * 120.79388 * 180.25319 * 27 26 25 52 52 H 1.07998 * 120.41710 * 180.02562 * 28 27 26 53 53 H 1.08007 * 119.61516 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3801 -4.7127 -0.8432 13 6 0.2686 -4.8115 1.3059 14 6 -0.7251 -5.9749 1.3055 15 6 0.0363 -7.2960 1.1800 16 6 0.8316 -7.3042 -0.1270 17 6 1.8249 -6.1411 -0.1269 18 1 2.5087 -6.2482 0.7152 19 7 2.5863 -6.1490 -1.3783 20 6 3.6861 -6.9197 -1.4933 21 8 4.0454 -7.6064 -0.5604 22 6 4.4690 -6.9282 -2.7809 23 6 5.6607 -7.8784 -2.6467 24 6 6.4553 -7.8875 -3.9543 25 6 7.6295 -8.8229 -3.8220 26 6 7.7972 -9.8427 -4.7398 27 6 8.8802 -10.6981 -4.6089 28 6 9.7584 -10.4944 -3.5551 29 6 9.5267 -9.4528 -2.6772 30 7 8.4849 -8.6591 -2.8320 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7145 0.8895 34 1 2.6849 -3.7145 -0.8905 35 1 0.9525 -4.9185 2.1479 36 1 -0.2735 -3.8701 1.3954 37 1 -1.2920 -5.9688 2.2364 38 1 -1.4090 -5.8682 0.4634 39 1 0.7201 -7.4026 2.0221 40 1 -0.6717 -8.1248 1.1802 41 1 0.1477 -7.1976 -0.9691 42 1 1.3744 -8.2453 -0.2161 43 1 2.2991 -5.5996 -2.1244 44 1 4.8295 -5.9217 -2.9936 45 1 3.8263 -7.2635 -3.5948 46 1 5.3007 -8.8849 -2.4338 47 1 6.3034 -7.5426 -1.8329 48 1 6.8154 -6.8811 -4.1676 49 1 5.8125 -8.2236 -4.7678 50 1 7.0934 -9.9716 -5.5487 51 1 9.0389 -11.5011 -5.3133 52 1 10.6131 -11.1413 -3.4228 53 1 10.2063 -9.2873 -1.8542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722957004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:13 Heat of formation + Delta-G solvation = -48.224421 kcal Electronic energy + Delta-G solvation = -29544.089960 eV Core-core repulsion = 25606.296585 eV Total energy + Delta-G solvation = -3937.793375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.26432 -41.00912 -39.41867 -36.43521 -35.93314 -35.14401 -33.68238 -33.28290 -32.45054 -31.22022 -30.54435 -28.26599 -26.89310 -24.73072 -24.67963 -24.21197 -23.03575 -21.99585 -21.92488 -21.32727 -20.63827 -19.25148 -18.07088 -17.57539 -17.25430 -17.16492 -16.74780 -16.56845 -16.29807 -15.77596 -15.59347 -15.36266 -15.16823 -15.02990 -14.90407 -14.67448 -14.50838 -14.17131 -14.05990 -13.89521 -13.71146 -13.32009 -13.01466 -12.97057 -12.79861 -12.71571 -12.67996 -12.53602 -12.21566 -12.18451 -12.11356 -11.93303 -11.85328 -11.66901 -11.51641 -11.34134 -11.12670 -10.93980 -10.77294 -10.70188 -10.27541 -9.93818 -9.84415 -8.98309 -7.94706 -5.22814 0.21527 0.41476 1.46853 1.49417 1.55581 1.73419 2.27605 2.55718 2.89730 3.38165 3.43356 3.56432 3.73898 3.78172 3.85777 3.94716 4.04987 4.10003 4.14257 4.21823 4.26570 4.29443 4.31208 4.39113 4.46235 4.49604 4.51972 4.57194 4.60163 4.68669 4.76202 4.77229 4.86466 4.87060 4.89158 4.99125 5.04943 5.12780 5.17363 5.18304 5.25004 5.29893 5.31204 5.31467 5.35375 5.43305 5.43983 5.48348 5.53585 5.65222 5.86009 6.27404 6.64319 7.13240 7.34492 7.34580 8.09672 8.34988 9.28088 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.002127 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.403631 B =13157.856025 C =15427.849670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.160 3.840 11 C -0.084 4.084 12 H 0.081 0.919 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.060 0.940 19 N -0.717 5.717 20 C 0.508 3.492 21 O -0.589 6.589 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.066 4.066 25 C 0.108 3.892 26 C -0.175 4.175 27 C -0.079 4.079 28 C -0.181 4.181 29 C 0.079 3.921 30 N -0.519 5.519 31 H 0.252 0.748 32 H 0.376 0.624 33 H 0.000 1.000 34 H 0.026 0.974 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.412 0.588 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.159 0.841 51 H 0.163 0.837 52 H 0.159 0.841 53 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -24.867 -11.753 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.103 4.103 12 H 0.099 0.901 13 C -0.144 4.144 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.155 4.155 17 C 0.055 3.945 18 H 0.078 0.922 19 N -0.368 5.368 20 C 0.296 3.704 21 O -0.469 6.469 22 C -0.173 4.173 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.029 4.029 26 C -0.195 4.195 27 C -0.105 4.105 28 C -0.201 4.201 29 C -0.078 4.078 30 N -0.229 5.229 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.018 0.982 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.248 0.752 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.128 0.872 50 H 0.177 0.823 51 H 0.181 0.819 52 H 0.177 0.823 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.958 -24.558 -10.508 28.872 hybrid contribution 0.283 0.896 -0.307 0.988 sum 11.241 -23.662 -10.815 28.341 Atomic orbital electron populations 1.69792 1.06376 1.26109 1.59279 1.25506 0.96414 1.00847 1.03666 0.85262 0.77269 0.79432 0.78089 1.20284 1.21939 1.20879 1.19529 0.91271 0.85536 1.41497 0.91307 1.42496 1.05602 1.00775 1.89278 1.20757 0.93680 0.85087 0.97107 1.21422 0.96818 0.92557 0.99544 0.90071 1.21443 0.97951 0.98941 0.96083 1.21533 0.97369 0.93499 1.02635 1.21477 0.98882 0.97791 0.96790 1.21801 0.97444 0.97057 0.99209 1.20769 0.92473 0.94394 0.86815 0.92219 1.46111 1.27657 1.46133 1.16860 1.21345 0.80231 0.78218 0.90580 1.90675 1.69680 1.43911 1.42677 1.21738 0.97441 1.03355 0.94785 1.21054 0.95172 0.98759 0.97263 1.20622 0.92644 0.98711 0.98363 1.21628 0.95197 0.95450 0.90672 1.22328 1.00197 0.95899 1.01044 1.22029 0.92851 0.98414 0.97173 1.22458 1.01863 0.99569 0.96174 1.23131 0.94147 0.91523 0.98996 1.67458 1.04372 1.29136 1.21970 0.93964 0.79074 0.98175 0.95635 0.93055 0.93030 0.91057 0.91205 0.92621 0.89898 0.90454 0.92450 0.75163 0.87251 0.85459 0.93047 0.93551 0.89609 0.87201 0.82305 0.81939 0.82319 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.25 -13.89 9.99 84.04 0.84 -13.05 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.32 5.33 -343.45 -1.83 -39.15 16 10 C 0.16 6.49 5.57 86.38 0.48 6.98 16 11 C -0.08 -2.64 1.80 -10.79 -0.02 -2.66 16 12 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 13 C -0.11 -3.32 5.08 30.60 0.16 -3.17 16 14 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 15 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 16 C -0.12 -2.73 5.49 30.58 0.17 -2.56 16 17 C 0.16 4.50 1.90 44.98 0.09 4.58 16 18 H 0.06 2.01 7.58 -2.38 -0.02 1.99 16 19 N -0.72 -17.69 4.30 -442.63 -1.91 -19.60 16 20 C 0.51 13.46 7.79 87.66 0.68 14.14 16 21 O -0.59 -20.88 15.64 -3.05 -0.05 -20.93 16 22 C -0.13 -2.37 5.70 29.85 0.17 -2.20 16 23 C -0.08 -1.76 4.36 30.60 0.13 -1.62 16 24 C -0.07 -1.01 5.61 29.85 0.17 -0.84 16 25 C 0.11 2.04 6.18 42.55 0.26 2.30 16 26 C -0.18 -2.36 9.71 22.36 0.22 -2.14 16 27 C -0.08 -0.89 10.18 22.47 0.23 -0.66 16 28 C -0.18 -2.29 10.11 22.36 0.23 -2.06 16 29 C 0.08 1.42 11.18 84.67 0.95 2.36 16 30 N -0.52 -12.08 9.88 -183.89 -1.82 -13.89 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.38 19.95 6.85 -92.71 -0.63 19.32 16 33 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.03 1.01 7.30 -2.39 -0.02 0.99 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.90 7.18 -2.38 -0.02 1.88 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.41 8.47 8.39 -92.71 -0.78 7.69 16 44 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 47 H 0.05 1.29 7.90 -2.39 -0.02 1.27 16 48 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 50 H 0.16 1.19 7.95 -2.91 -0.02 1.17 16 51 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 52 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 53 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -76.40 424.24 1.76 -74.64 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.52 Total: 37.82 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.57 Total: -9.04 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.27 Total: -130.92 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.40 1.76 -74.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.416 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds