Wall clock time and date at job start Wed Apr 1 2020 03:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47247 * 240.00340 * 3 2 1 5 5 H 1.48504 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47500 * 119.99541 * 3 2 1 7 7 C 1.38814 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00174 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00310 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47747 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47045 * 305.00258 * 11 10 9 13 13 C 1.53000 * 109.46742 * 64.99948 * 11 10 9 14 14 C 1.52998 * 109.46893 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47159 * 299.99596 * 14 13 11 16 16 C 1.53000 * 109.46730 * 60.00041 * 15 14 13 17 17 C 1.52995 * 109.47337 * 184.99962 * 11 10 9 18 18 H 1.09007 * 109.47080 * 299.99517 * 17 11 10 19 19 N 1.46499 * 109.47455 * 60.00113 * 17 11 10 20 20 C 1.34777 * 120.00199 * 205.00257 * 19 17 11 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 17 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 17 23 23 C 1.52996 * 109.47159 * 179.72352 * 22 20 19 24 24 C 1.52994 * 109.47118 * 179.97438 * 23 22 20 25 25 C 1.50708 * 109.47076 * 179.97438 * 24 23 22 26 26 C 1.38224 * 119.61607 * 124.72651 * 25 24 23 27 27 C 1.38624 * 119.16090 * 179.71300 * 26 25 24 28 28 C 1.38676 * 118.41856 * 0.55171 * 27 26 25 29 29 C 1.38175 * 119.16415 * 359.73500 * 28 27 26 30 30 N 1.31854 * 119.62026 * 305.00120 * 25 24 23 31 31 H 0.96996 * 120.00548 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00206 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47490 * 59.99779 * 10 9 7 34 34 H 1.09010 * 109.47034 * 300.00438 * 10 9 7 35 35 H 1.09008 * 109.47308 * 299.99816 * 13 11 10 36 36 H 1.08998 * 109.47599 * 60.00182 * 13 11 10 37 37 H 1.09004 * 109.47835 * 59.99863 * 14 13 11 38 38 H 1.08998 * 109.47434 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.47187 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47285 * 300.00474 * 15 14 13 41 41 H 1.09005 * 109.46716 * 179.97438 * 16 15 14 42 42 H 1.08998 * 109.47384 * 60.00347 * 16 15 14 43 43 H 0.97000 * 119.99484 * 24.99354 * 19 17 11 44 44 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 45 45 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 46 46 H 1.09004 * 109.47066 * 299.99797 * 23 22 20 47 47 H 1.09000 * 109.47234 * 59.99288 * 23 22 20 48 48 H 1.08998 * 109.46965 * 299.99512 * 24 23 22 49 49 H 1.09003 * 109.47184 * 60.00331 * 24 23 22 50 50 H 1.08002 * 120.42160 * 359.97438 * 26 25 24 51 51 H 1.08003 * 120.78959 * 180.25954 * 27 26 25 52 52 H 1.08002 * 120.41857 * 179.70906 * 28 27 26 53 53 H 1.07997 * 119.61795 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0640 -4.8197 0.0022 12 1 0.3802 -4.7127 0.8443 13 6 0.2688 -4.8115 -1.3048 14 6 -0.7258 -5.9741 -1.3039 15 6 0.0347 -7.2958 -1.1780 16 6 0.8300 -7.3039 0.1290 17 6 1.8249 -6.1411 0.1280 18 1 2.5087 -6.2481 -0.7142 19 7 2.5864 -6.1490 1.3794 20 6 3.6861 -6.9196 1.4943 21 8 4.0450 -7.6069 0.5617 22 6 4.4659 -6.9325 2.7838 23 6 5.6540 -7.8874 2.6519 24 6 6.4460 -7.8999 3.9608 25 6 7.6160 -8.8410 3.8311 26 6 8.8946 -8.3800 4.0823 27 6 9.9633 -9.2552 3.9660 28 6 9.7059 -10.5645 3.5883 29 6 8.4016 -10.9519 3.3476 30 7 7.4086 -10.0932 3.4740 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0023 33 1 2.6856 -3.7141 0.8911 34 1 2.6842 -3.7148 -0.8889 35 1 -0.2734 -3.8701 -1.3944 36 1 0.9525 -4.9185 -2.1469 37 1 -1.4097 -5.8668 -0.4619 38 1 -1.2927 -5.9680 -2.2349 39 1 -0.6739 -8.1241 -1.1779 40 1 0.7185 -7.4032 -2.0200 41 1 1.3714 -8.2457 0.2189 42 1 0.1463 -7.1966 0.9711 43 1 2.2992 -5.5994 2.1254 44 1 4.8296 -5.9276 2.9985 45 1 3.8199 -7.2663 3.5957 46 1 5.2904 -8.8923 2.4372 47 1 6.3000 -7.5536 1.8399 48 1 6.8097 -6.8950 4.1751 49 1 5.8002 -8.2336 4.7731 50 1 9.0586 -7.3519 4.3698 51 1 10.9728 -8.9241 4.1602 52 1 10.5148 -11.2724 3.4832 53 1 8.1928 -11.9698 3.0535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722957014.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:23 Heat of formation + Delta-G solvation = -48.174304 kcal Electronic energy + Delta-G solvation = -29543.154652 eV Core-core repulsion = 25605.363450 eV Total energy + Delta-G solvation = -3937.791202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26300 -41.00950 -39.41727 -36.42975 -35.93585 -35.14372 -33.67811 -33.28583 -32.45084 -31.21766 -30.54259 -28.26702 -26.88874 -24.72562 -24.67756 -24.21666 -23.03724 -21.99222 -21.92773 -21.32962 -20.63795 -19.24550 -18.07211 -17.57211 -17.26921 -17.16441 -16.74508 -16.54925 -16.29843 -15.78780 -15.59849 -15.32058 -15.21395 -15.02959 -14.84246 -14.72003 -14.50487 -14.15577 -14.06223 -13.93542 -13.67951 -13.31971 -13.03228 -12.94717 -12.80480 -12.70830 -12.67823 -12.54824 -12.21537 -12.18649 -12.11041 -11.93206 -11.84869 -11.66867 -11.51701 -11.34056 -11.12604 -10.93351 -10.77614 -10.70141 -10.29092 -9.93753 -9.84608 -8.97765 -7.94063 -5.22262 0.21135 0.40499 1.47374 1.49985 1.56135 1.73626 2.27503 2.56244 2.89255 3.38878 3.42647 3.56631 3.73340 3.78504 3.85769 3.94669 4.04850 4.10113 4.13978 4.21463 4.25325 4.29019 4.31692 4.38918 4.46565 4.49853 4.51875 4.57175 4.59968 4.68645 4.75871 4.77434 4.86578 4.86741 4.89241 4.98704 5.04980 5.12864 5.16500 5.18621 5.24958 5.29948 5.31093 5.31499 5.34915 5.42990 5.43842 5.48786 5.53615 5.65204 5.85357 6.27898 6.64394 7.11617 7.34594 7.34968 8.10375 8.35372 9.28794 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.002145 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.527743 B =13048.764756 C =15540.652882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.084 4.084 12 H 0.080 0.920 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.061 0.939 19 N -0.717 5.717 20 C 0.508 3.492 21 O -0.589 6.589 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.066 4.066 25 C 0.109 3.891 26 C -0.179 4.179 27 C -0.080 4.080 28 C -0.181 4.181 29 C 0.081 3.919 30 N -0.515 5.515 31 H 0.251 0.749 32 H 0.376 0.624 33 H 0.027 0.973 34 H 0.001 0.999 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.412 0.588 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.155 0.845 51 H 0.161 0.839 52 H 0.160 0.840 53 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -21.791 10.256 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.056 3.944 18 H 0.079 0.921 19 N -0.368 5.368 20 C 0.296 3.704 21 O -0.469 6.469 22 C -0.173 4.173 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.028 4.028 26 C -0.198 4.198 27 C -0.106 4.106 28 C -0.201 4.201 29 C -0.076 4.076 30 N -0.226 5.226 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.045 0.955 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.248 0.752 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.121 0.879 49 H 0.111 0.889 50 H 0.173 0.827 51 H 0.178 0.822 52 H 0.177 0.823 53 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.604 -22.442 9.440 27.415 hybrid contribution 0.783 1.588 0.034 1.771 sum 13.387 -20.854 9.473 26.530 Atomic orbital electron populations 1.69790 1.06418 1.26107 1.59309 1.25515 0.96404 1.00890 1.03696 0.85256 0.77255 0.79386 0.78113 1.20846 1.22053 1.20210 1.19534 0.91299 0.85491 1.41440 0.91196 1.42505 1.05608 1.00804 1.89277 1.20755 0.93654 0.85012 0.97169 1.21421 0.96848 0.92588 0.99511 0.90154 1.21439 0.97939 0.98902 0.96110 1.21534 0.97384 0.93520 1.02614 1.21475 0.98881 0.97789 0.96776 1.21822 0.97474 0.97112 0.99197 1.20783 0.92446 0.94342 0.86834 0.92085 1.46112 1.27610 1.46173 1.16871 1.21341 0.80278 0.78174 0.90571 1.90674 1.69731 1.43759 1.42765 1.21736 0.97543 1.03452 0.94594 1.21053 0.95346 0.99124 0.96710 1.20613 0.93670 0.98022 0.98018 1.21606 0.95355 0.91459 0.94410 1.22328 0.92896 1.02437 1.02184 1.22017 1.00636 0.93255 0.94653 1.22464 0.98634 0.97929 1.01065 1.23160 0.89140 0.99688 0.95609 1.67455 1.37674 1.04035 1.13387 0.93987 0.79113 0.95536 0.98089 0.93021 0.92976 0.91270 0.91046 0.89983 0.92553 0.92552 0.90564 0.75163 0.86653 0.86054 0.92745 0.93827 0.87898 0.88923 0.82750 0.82177 0.82274 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.01 5.33 -343.45 -1.83 -38.84 16 10 C 0.16 6.42 5.56 86.38 0.48 6.90 16 11 C -0.08 -2.63 1.80 -10.80 -0.02 -2.65 16 12 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.11 -3.30 5.08 30.59 0.16 -3.15 16 14 C -0.11 -2.72 5.92 30.60 0.18 -2.54 16 15 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 16 C -0.12 -2.80 5.50 30.61 0.17 -2.63 16 17 C 0.16 4.51 1.90 45.00 0.09 4.59 16 18 H 0.06 2.04 7.58 -2.38 -0.02 2.02 16 19 N -0.72 -17.67 4.31 -442.46 -1.90 -19.57 16 20 C 0.51 13.44 7.79 87.66 0.68 14.12 16 21 O -0.59 -20.83 15.65 -3.04 -0.05 -20.88 16 22 C -0.13 -2.37 5.70 29.85 0.17 -2.20 16 23 C -0.08 -1.75 4.36 30.59 0.13 -1.62 16 24 C -0.07 -1.01 5.61 29.85 0.17 -0.84 16 25 C 0.11 2.07 6.18 42.55 0.26 2.33 16 26 C -0.18 -2.61 9.71 22.36 0.22 -2.39 16 27 C -0.08 -0.97 10.18 22.47 0.23 -0.74 16 28 C -0.18 -2.28 10.11 22.36 0.23 -2.05 16 29 C 0.08 1.38 11.18 84.67 0.95 2.33 16 30 N -0.52 -11.45 9.88 -183.89 -1.82 -13.26 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.38 19.83 6.85 -92.71 -0.64 19.20 16 33 H 0.03 1.03 7.31 -2.39 -0.02 1.01 16 34 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.05 1.90 7.18 -2.38 -0.02 1.88 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.41 8.46 8.40 -92.71 -0.78 7.68 16 44 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.42 7.90 -2.38 -0.02 1.40 16 47 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 48 H 0.10 1.09 7.87 -2.39 -0.02 1.07 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.15 1.48 7.95 -2.91 -0.02 1.46 16 51 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 52 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 53 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -75.21 424.25 1.76 -73.45 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.52 Total: 38.58 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.57 Total: -9.36 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.27 Total: -129.74 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.21 1.76 -73.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957014.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.273 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds