Wall clock time and date at job start Wed Apr 1 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48508 * 109.46940 * 269.99855 * 3 2 1 5 5 H 1.48491 * 109.47225 * 29.99429 * 3 2 1 6 6 H 1.48499 * 109.46927 * 150.00116 * 3 2 1 7 7 C 1.38812 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99961 * 201.25844 * 7 2 1 9 9 N 1.36938 * 120.00078 * 21.26586 * 7 2 1 10 10 C 1.46501 * 120.00211 * 37.41539 * 9 7 2 11 11 C 1.52997 * 109.47009 * 90.00438 * 10 9 7 12 12 N 1.46501 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99651 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00470 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99801 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.47230 * 179.97438 * 15 13 12 17 17 C 1.38666 * 120.42019 * 270.25316 * 16 15 13 18 18 C 1.38626 * 118.42276 * 180.24593 * 17 16 15 19 19 C 1.38231 * 119.16055 * 359.74511 * 18 17 16 20 20 N 1.31863 * 120.75960 * 0.02562 * 19 18 17 21 21 C 1.31877 * 121.72650 * 359.97438 * 20 19 18 22 22 C 1.46498 * 119.99650 * 217.41912 * 9 7 2 23 23 C 1.54241 * 108.89898 * 57.66560 * 22 9 7 24 24 C 1.50470 * 108.52660 * 159.26161 * 23 22 9 25 25 C 1.54069 * 112.49761 * 94.15454 * 24 23 22 26 26 C 1.54067 * 112.81652 * 318.28193 * 25 24 23 27 27 C 1.50479 * 112.49652 * 318.28620 * 26 25 24 28 28 C 1.45546 * 108.89596 * 294.78006 * 22 9 7 29 29 H 0.96998 * 120.00281 * 354.95593 * 1 2 3 30 30 H 1.08997 * 109.47057 * 330.00081 * 10 9 7 31 31 H 1.08997 * 109.47011 * 209.99799 * 10 9 7 32 32 H 1.08997 * 109.47502 * 59.99916 * 11 10 9 33 33 H 1.09010 * 109.46974 * 299.99760 * 11 10 9 34 34 H 0.96997 * 120.00291 * 359.97438 * 12 11 10 35 35 H 1.09000 * 109.47096 * 60.00339 * 15 13 12 36 36 H 1.08999 * 109.47343 * 300.00333 * 15 13 12 37 37 H 1.08007 * 120.78953 * 359.97077 * 17 16 15 38 38 H 1.07996 * 120.42263 * 179.72995 * 18 17 16 39 39 H 1.07997 * 119.61953 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.62044 * 179.97438 * 21 20 19 41 41 H 1.09004 * 108.87419 * 176.18055 * 22 9 7 42 42 H 1.09000 * 109.62931 * 278.97863 * 23 22 9 43 43 H 1.09000 * 109.62776 * 39.55533 * 23 22 9 44 44 H 1.09000 * 108.87725 * 333.37471 * 24 23 22 45 45 H 1.09004 * 108.88121 * 214.92835 * 24 23 22 46 46 H 1.09001 * 108.81387 * 197.42420 * 25 24 23 47 47 H 1.08998 * 108.72628 * 79.08719 * 25 24 23 48 48 H 1.08994 * 108.87967 * 197.51104 * 26 25 24 49 49 H 1.08995 * 108.87505 * 79.06321 * 26 25 24 50 50 H 1.08995 * 109.62633 * 334.44591 * 27 26 25 51 51 H 1.08991 * 109.62830 * 213.86139 * 27 26 25 52 52 H 1.08994 * 108.89906 * 303.44409 * 28 22 9 53 53 H 1.09003 * 108.88916 * 62.03782 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0351 -1.2339 0.3397 9 7 1.3955 -2.3479 -0.4291 10 6 0.4658 -2.3004 -1.5603 11 6 1.2352 -2.5298 -2.8627 12 7 0.3056 -2.4817 -3.9940 13 6 0.7625 -2.6582 -5.2495 14 8 1.9432 -2.8564 -5.4430 15 6 -0.1938 -2.6093 -6.4132 16 6 0.5643 -2.8339 -7.6962 17 6 1.1029 -1.7612 -8.3905 18 6 1.7878 -2.0147 -9.5687 19 6 1.9148 -3.3197 -10.0065 20 7 1.3933 -4.3159 -9.3178 21 6 0.7355 -4.1119 -8.1931 22 6 1.6674 -3.6211 0.2426 23 6 1.3141 -3.4827 1.7376 24 6 1.0992 -4.8586 2.3075 25 6 2.3730 -5.4337 2.9560 26 6 3.6428 -5.1531 2.1298 27 6 3.4224 -5.3417 0.6533 28 6 3.0633 -3.9758 0.0331 29 1 -0.4850 0.8367 0.0739 30 1 -0.0189 -1.3246 -1.5916 31 1 -0.2894 -3.0776 -1.4428 32 1 1.7198 -3.5056 -2.8314 33 1 1.9904 -1.7526 -2.9802 34 1 -0.6387 -2.3228 -3.8394 35 1 -0.6787 -1.6336 -6.4443 36 1 -0.9488 -3.3867 -6.2960 37 1 0.9877 -0.7516 -8.0243 38 1 2.2166 -1.2030 -10.1376 39 1 2.4473 -3.5257 -10.9233 40 1 0.3219 -4.9530 -7.6566 41 1 1.0370 -4.3937 -0.1976 42 1 2.1332 -2.9923 2.2636 43 1 0.4022 -2.8953 1.8455 44 1 0.7788 -5.5257 1.5072 45 1 0.3118 -4.8098 3.0597 46 1 2.2558 -6.5118 3.0652 47 1 2.4923 -4.9916 3.9451 48 1 4.4330 -5.8285 2.4574 49 1 3.9614 -4.1266 2.3106 50 1 2.6042 -6.0434 0.4919 51 1 4.3331 -5.7246 0.1931 52 1 3.2616 -4.0115 -1.0380 53 1 3.6937 -3.2088 0.4831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723639415.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:59 Heat of formation + Delta-G solvation = -17.187360 kcal Electronic energy + Delta-G solvation = -30534.942495 eV Core-core repulsion = 26598.494988 eV Total energy + Delta-G solvation = -3936.447507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36816 -40.35555 -39.99398 -37.24877 -35.49818 -34.53776 -33.64367 -32.85675 -32.84525 -31.68270 -29.79850 -28.29916 -26.25949 -25.45649 -24.66660 -24.50648 -23.35993 -22.41349 -21.33445 -21.29082 -19.98645 -18.49074 -18.05239 -17.80791 -17.45243 -17.10604 -17.05588 -16.34278 -16.25322 -15.97576 -15.60924 -15.47797 -15.09991 -14.98942 -14.79187 -14.52009 -14.30752 -14.18390 -13.95511 -13.86385 -13.72953 -13.47460 -13.09897 -12.98235 -12.88556 -12.83188 -12.68211 -12.46746 -12.40192 -12.10671 -11.97959 -11.49777 -11.49117 -11.27601 -11.20933 -11.09291 -11.05589 -10.84871 -10.67823 -10.50488 -10.42025 -10.00892 -9.90441 -8.48000 -7.83085 -5.39150 0.15446 0.35684 1.41546 1.46606 1.52061 1.68036 2.25618 2.51775 2.92243 3.26535 3.50214 3.59916 3.73116 3.89525 3.92408 4.03452 4.08202 4.10403 4.11804 4.18621 4.37790 4.40574 4.45388 4.48635 4.52032 4.54150 4.57540 4.62872 4.72551 4.76625 4.82444 4.88540 4.92054 5.00842 5.07900 5.16109 5.18080 5.25819 5.31101 5.31783 5.37831 5.44478 5.46783 5.48924 5.51206 5.64640 5.71718 5.75745 5.76870 5.78969 5.89893 6.51831 6.65643 7.02384 7.20523 7.32768 7.89614 8.41542 9.15905 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.002713 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.284428 B =10318.687763 C =12079.938911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.024 4.024 3 Si 0.940 3.060 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.047 0.953 9 N -0.593 5.593 10 C 0.146 3.854 11 C 0.122 3.878 12 N -0.713 5.713 13 C 0.506 3.494 14 O -0.591 6.591 15 C -0.088 4.088 16 C -0.125 4.125 17 C -0.077 4.077 18 C -0.172 4.172 19 C 0.081 3.919 20 N -0.514 5.514 21 C 0.094 3.906 22 C 0.176 3.824 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.106 4.106 28 C -0.115 4.115 29 H 0.252 0.748 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.025 0.975 34 H 0.414 0.586 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.179 0.821 40 H 0.162 0.838 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.035 0.965 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -8.146 -9.847 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.221 4.221 3 Si 0.770 3.230 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.064 0.936 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.005 4.005 12 N -0.365 5.365 13 C 0.294 3.706 14 O -0.472 6.472 15 C -0.128 4.128 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.191 4.191 19 C -0.076 4.076 20 N -0.223 5.223 21 C -0.063 4.063 22 C 0.071 3.929 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.154 4.154 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.196 0.804 40 H 0.179 0.821 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.054 0.946 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.791 -9.007 -10.298 13.798 hybrid contribution 0.154 2.364 0.564 2.436 sum -1.637 -6.643 -9.733 11.897 Atomic orbital electron populations 1.69966 1.06107 1.25959 1.53395 1.25596 0.95649 1.00420 1.00470 0.85694 0.78693 0.81361 0.77238 1.21924 1.21728 1.20144 1.18967 0.93835 0.86312 1.39062 0.93551 1.44032 1.51887 1.03820 1.31552 1.20933 0.91166 1.02006 0.84039 1.21837 0.92924 0.98720 0.86993 1.45969 1.12673 1.72143 1.05679 1.21245 0.89242 0.75435 0.84685 1.90697 1.19824 1.50868 1.85788 1.20661 0.96891 1.08025 0.87215 1.20517 1.00469 0.94880 0.96861 1.21821 0.94268 0.99932 0.94314 1.22444 1.00043 0.99212 0.97420 1.23243 0.96045 0.88734 0.99569 1.67671 1.09619 1.37152 1.07811 1.22855 0.94945 0.96258 0.92226 1.19519 0.94587 0.86946 0.91850 1.21422 0.99711 0.96273 0.96538 1.21302 0.97911 0.95751 1.00002 1.21863 0.93469 1.00919 0.98363 1.21305 0.97948 1.01109 0.94948 1.21244 1.01485 0.95970 0.95705 1.20853 0.98307 0.97031 0.99196 0.93845 0.90552 0.94007 0.94210 0.95639 0.74941 0.85045 0.84402 0.83655 0.82049 0.80445 0.82076 0.93259 0.94027 0.94877 0.92047 0.92460 0.90737 0.92475 0.90982 0.93920 0.91137 0.91562 0.94595 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.53 11.45 21.65 0.25 -49.28 16 2 C -0.02 -1.25 4.96 84.86 0.42 -0.83 16 3 Si 0.94 43.94 29.61 68.60 2.03 45.97 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.25 -13.13 8.43 84.03 0.71 -12.42 16 8 H 0.05 2.52 6.99 -2.91 -0.02 2.50 16 9 N -0.59 -27.50 2.28 -688.47 -1.57 -29.07 16 10 C 0.15 6.23 5.38 86.38 0.46 6.70 16 11 C 0.12 4.85 6.00 86.38 0.52 5.37 16 12 N -0.71 -21.70 5.56 -463.06 -2.57 -24.27 16 13 C 0.51 15.27 7.82 87.66 0.69 15.96 16 14 O -0.59 -23.97 16.03 -3.02 -0.05 -24.02 16 15 C -0.09 -1.66 5.85 29.10 0.17 -1.49 16 16 C -0.12 -2.84 4.39 -19.77 -0.09 -2.93 16 17 C -0.08 -1.65 9.86 22.46 0.22 -1.43 16 18 C -0.17 -3.24 10.11 22.36 0.23 -3.01 16 19 C 0.08 1.68 11.18 84.69 0.95 2.63 16 20 N -0.51 -13.27 10.36 -195.84 -2.03 -15.30 16 21 C 0.09 2.28 10.86 84.67 0.92 3.20 16 22 C 0.18 6.93 2.13 43.14 0.09 7.02 16 23 C -0.10 -3.83 4.54 30.20 0.14 -3.69 16 24 C -0.11 -3.22 5.31 30.14 0.16 -3.06 16 25 C -0.11 -2.64 5.85 31.32 0.18 -2.45 16 26 C -0.12 -2.99 5.31 30.14 0.16 -2.83 16 27 C -0.11 -2.94 5.61 30.20 0.17 -2.77 16 28 C -0.11 -4.19 4.51 28.74 0.13 -4.06 16 29 H 0.25 13.39 8.32 -92.71 -0.77 12.62 16 30 H 0.08 3.70 5.50 -2.39 -0.01 3.69 16 31 H 0.04 1.64 7.87 -2.39 -0.02 1.62 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 34 H 0.41 9.89 8.47 -92.71 -0.79 9.11 16 35 H 0.13 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.14 1.72 8.09 -2.39 -0.02 1.70 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.05 1.84 7.06 -2.38 -0.02 1.83 16 42 H 0.04 1.69 6.98 -2.39 -0.02 1.68 16 43 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 44 H 0.06 1.68 6.63 -2.39 -0.02 1.66 16 45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.04 1.28 6.63 -2.39 -0.02 1.26 16 50 H 0.07 1.82 6.98 -2.39 -0.02 1.80 16 51 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.04 1.62 6.36 -2.39 -0.02 1.61 16 Total: -1.00 -69.96 414.19 2.39 -67.56 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.11 Total: 28.50 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.23 Total: -0.09 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -5.92 Total: -117.93 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.96 2.39 -67.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723639415.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.374 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds