Wall clock time and date at job start Wed Apr 1 2020 03:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99878 * 2 1 4 4 H 1.48494 * 109.46902 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47076 * 300.00560 * 3 2 1 6 6 H 1.48501 * 109.46910 * 60.00455 * 3 2 1 7 7 C 1.38814 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00162 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99610 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99447 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46708 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.48005 * 54.99760 * 11 10 9 13 13 C 1.53005 * 109.47000 * 294.99162 * 11 10 9 14 14 C 1.52998 * 109.47000 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47018 * 60.00638 * 14 13 11 16 16 C 1.52997 * 109.46912 * 299.99632 * 15 14 13 17 17 C 1.53000 * 109.47018 * 174.99800 * 11 10 9 18 18 H 1.09000 * 109.47496 * 59.99664 * 17 11 10 19 19 N 1.46498 * 109.47312 * 299.99523 * 17 11 10 20 20 C 1.34775 * 120.00498 * 154.99665 * 19 17 11 21 21 O 1.21703 * 119.99593 * 0.02562 * 20 19 17 22 22 C 1.46678 * 120.00284 * 180.02562 * 20 19 17 23 23 C 1.38055 * 126.20319 * 180.02562 * 22 20 19 24 24 C 1.39245 * 106.97586 * 179.74610 * 23 22 20 25 25 C 1.35972 * 108.03849 * 0.05185 * 24 23 22 26 26 N 1.35112 * 108.76166 * 359.91025 * 25 24 23 27 27 H 0.97009 * 125.67878 * 180.10121 * 26 25 24 28 28 C 1.51017 * 123.84917 * 179.82525 * 25 24 23 29 29 C 1.53323 * 108.40939 * 343.33857 * 28 25 24 30 30 C 1.53110 * 109.52303 * 50.18496 * 29 28 25 31 31 C 1.50837 * 127.70497 * 180.13147 * 24 23 22 32 32 H 0.96997 * 120.00438 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00366 * 359.97438 * 9 7 2 34 34 H 1.09000 * 109.47804 * 59.99558 * 10 9 7 35 35 H 1.09001 * 109.46890 * 299.99003 * 10 9 7 36 36 H 1.08996 * 109.47647 * 300.00428 * 13 11 10 37 37 H 1.09000 * 109.46774 * 60.00753 * 13 11 10 38 38 H 1.09001 * 109.47169 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.47683 * 300.00298 * 14 13 11 40 40 H 1.09000 * 109.47496 * 59.99664 * 15 14 13 41 41 H 1.09006 * 109.47085 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47374 * 299.99580 * 16 15 14 43 43 H 1.09004 * 109.46901 * 180.02562 * 16 15 14 44 44 H 0.97006 * 119.99903 * 335.00135 * 19 17 11 45 45 H 1.07998 * 126.51099 * 359.71212 * 23 22 20 46 46 H 1.09000 * 109.68125 * 103.07368 * 28 25 24 47 47 H 1.09006 * 109.67250 * 223.57626 * 28 25 24 48 48 H 1.09004 * 109.45979 * 170.19552 * 29 28 25 49 49 H 1.08994 * 109.46433 * 290.17837 * 29 28 25 50 50 H 1.09001 * 109.47525 * 49.57951 * 30 29 28 51 51 H 1.09004 * 109.47091 * 169.58950 * 30 29 28 52 52 H 1.09006 * 109.68306 * 283.21941 * 31 24 23 53 53 H 1.08997 * 109.67872 * 43.77078 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3801 -4.7127 -0.8442 13 6 0.2688 -4.8115 1.3049 14 6 -0.7250 -5.9748 1.3046 15 6 0.0364 -7.2960 1.1791 16 6 0.8315 -7.3041 -0.1280 17 6 1.8248 -6.1411 -0.1280 18 1 2.5087 -6.2482 0.7140 19 7 2.5862 -6.1490 -1.3796 20 6 3.6859 -6.9196 -1.4946 21 8 4.0462 -7.6093 -0.5588 22 6 4.4485 -6.9271 -2.7475 23 6 5.5874 -7.6639 -3.0046 24 6 5.9733 -7.3735 -4.3106 25 6 5.0850 -6.4810 -4.8236 26 7 4.1548 -6.2044 -3.8835 27 1 3.4050 -5.5982 -3.9905 28 6 5.1700 -5.9190 -6.2227 29 6 6.5812 -6.1777 -6.7634 30 6 6.9444 -7.6513 -6.5614 31 6 7.1558 -7.9250 -5.0673 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 2.6842 -3.7149 0.8888 35 1 2.6854 -3.7141 -0.8912 36 1 0.9526 -4.9186 2.1469 37 1 -0.2733 -3.8702 1.3945 38 1 -1.2918 -5.9688 2.2356 39 1 -1.4090 -5.8682 0.4625 40 1 0.7203 -7.4026 2.0211 41 1 -0.6716 -8.1248 1.1793 42 1 0.1476 -7.1976 -0.9700 43 1 1.3736 -8.2456 -0.2176 44 1 2.2989 -5.5995 -2.1256 45 1 6.0847 -8.3372 -2.3222 46 1 4.4364 -6.4110 -6.8612 47 1 4.9761 -4.8465 -6.1997 48 1 6.6123 -5.9384 -7.8264 49 1 7.2954 -5.5512 -6.2291 50 1 6.1357 -8.2794 -6.9350 51 1 7.8614 -7.8774 -7.1057 52 1 8.0689 -7.4346 -4.7298 53 1 7.2314 -8.9991 -4.8981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733075963.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:16 Heat of formation + Delta-G solvation = -40.352003 kcal Electronic energy + Delta-G solvation = -30654.614949 eV Core-core repulsion = 26717.162948 eV Total energy + Delta-G solvation = -3937.452001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61971 -41.02200 -39.26765 -37.15768 -36.46628 -35.32198 -33.73190 -33.11988 -31.26169 -31.13196 -29.98258 -29.33629 -27.01930 -25.26785 -24.77182 -23.64755 -22.87895 -22.11433 -22.04954 -21.34379 -20.73223 -19.53460 -19.42889 -18.99271 -17.33779 -16.89035 -16.77593 -16.35918 -15.95014 -15.71573 -15.54027 -15.28250 -15.15048 -14.92810 -14.78469 -14.66270 -14.59620 -14.45746 -14.08636 -13.97015 -13.73585 -13.48586 -13.36671 -13.24614 -12.99765 -12.80313 -12.70483 -12.66322 -12.24762 -12.11554 -11.96409 -11.89624 -11.66351 -11.61670 -11.55249 -11.41823 -11.34267 -11.21797 -11.07604 -10.92229 -10.15447 -9.79821 -9.02782 -8.91467 -7.98619 -5.27031 0.40744 1.44330 1.45392 1.55074 1.66778 1.98399 2.12254 2.33239 2.52307 3.34667 3.48903 3.71375 3.76241 3.83223 3.89832 3.98114 4.06171 4.08602 4.19435 4.21818 4.34014 4.39480 4.40627 4.44792 4.47957 4.52556 4.55385 4.68812 4.70320 4.74405 4.81494 4.84000 4.97837 4.99825 5.07105 5.07918 5.11728 5.13334 5.20531 5.22880 5.25625 5.27465 5.32454 5.37962 5.39991 5.43827 5.46357 5.53666 5.56301 5.84817 5.93965 6.23802 6.37745 6.53585 7.08380 7.31057 8.04964 8.30832 9.24554 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.003085 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.365234 B = 9075.367800 C =11919.253587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.737 5.737 10 C 0.161 3.839 11 C -0.084 4.084 12 H 0.080 0.920 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.110 4.110 16 C -0.118 4.118 17 C 0.163 3.837 18 H 0.068 0.932 19 N -0.713 5.713 20 C 0.590 3.410 21 O -0.573 6.573 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.191 4.191 25 C 0.060 3.940 26 N -0.522 5.522 27 H 0.425 0.575 28 C -0.055 4.055 29 C -0.112 4.112 30 C -0.116 4.116 31 C -0.048 4.048 32 H 0.252 0.748 33 H 0.377 0.623 34 H 0.003 0.997 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.404 0.596 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.070 0.930 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -18.514 -13.706 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.034 3.966 11 C -0.103 4.103 12 H 0.099 0.901 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.157 4.157 17 C 0.058 3.942 18 H 0.086 0.914 19 N -0.363 5.363 20 C 0.379 3.621 21 O -0.453 6.453 22 C -0.192 4.192 23 C -0.141 4.141 24 C -0.197 4.197 25 C -0.060 4.060 26 N -0.118 5.118 27 H 0.264 0.736 28 C -0.093 4.093 29 C -0.150 4.150 30 C -0.153 4.153 31 C -0.085 4.085 32 H 0.061 0.939 33 H 0.210 0.790 34 H 0.021 0.979 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.239 0.761 45 H 0.157 0.843 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.088 0.912 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.467 -18.794 -12.990 24.035 hybrid contribution -0.440 1.763 0.252 1.834 sum 7.027 -17.031 -12.738 22.398 Atomic orbital electron populations 1.69798 1.06377 1.26054 1.59261 1.25484 0.96381 1.00779 1.03527 0.85139 0.78073 0.80075 0.76863 1.19569 1.21617 1.22003 1.19576 0.91211 0.85520 1.41511 0.91437 1.42492 1.05608 1.00703 1.89271 1.20737 0.93632 0.85200 0.97003 1.21427 0.96772 0.92263 0.99848 0.90140 1.21441 0.97970 0.99059 0.95871 1.21540 0.97359 0.93441 1.02727 1.21474 0.98911 0.97858 0.96580 1.21821 0.97403 0.96980 0.99457 1.20880 0.92530 0.94797 0.85995 0.91372 1.45898 1.27361 1.45759 1.17258 1.17250 0.79681 0.79213 0.85923 1.90790 1.70012 1.44207 1.40254 1.20203 1.03153 1.07024 0.88791 1.21150 0.95245 1.00754 0.96934 1.19604 1.01444 1.03961 0.94690 1.21054 0.91258 1.00253 0.93392 1.41737 1.24161 1.35593 1.10331 0.73593 1.20504 0.99965 1.01149 0.87686 1.21549 0.94569 0.96952 1.01952 1.21594 1.02493 0.96390 0.94853 1.20131 0.93729 1.00317 0.94349 0.93884 0.78998 0.97870 0.96280 0.92701 0.92870 0.90831 0.91305 0.92223 0.89791 0.90661 0.92319 0.76099 0.84329 0.88582 0.89624 0.89078 0.92034 0.91613 0.89963 0.91177 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.93 13.06 21.65 0.28 -57.64 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -36.86 5.33 -343.45 -1.83 -38.69 16 10 C 0.16 6.48 5.56 86.38 0.48 6.96 16 11 C -0.08 -2.60 1.80 -10.79 -0.02 -2.62 16 12 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.11 -3.21 5.08 30.60 0.16 -3.06 16 14 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 15 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 16 C -0.12 -2.78 5.49 30.58 0.17 -2.61 16 17 C 0.16 4.58 1.90 44.97 0.09 4.66 16 18 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 19 N -0.71 -19.02 4.30 -446.58 -1.92 -20.94 16 20 C 0.59 18.07 7.75 86.45 0.67 18.74 16 21 O -0.57 -21.46 16.55 -4.36 -0.07 -21.54 16 22 C -0.08 -2.12 7.06 40.37 0.29 -1.84 16 23 C -0.11 -3.00 10.62 22.47 0.24 -2.76 16 24 C -0.19 -4.09 5.91 -20.11 -0.12 -4.21 16 25 C 0.06 1.14 7.02 41.63 0.29 1.43 16 26 N -0.52 -10.73 5.98 -171.31 -1.02 -11.75 16 27 H 0.42 6.79 8.19 -92.70 -0.76 6.03 16 28 C -0.06 -0.67 6.30 30.06 0.19 -0.48 16 29 C -0.11 -1.16 5.89 30.74 0.18 -0.98 16 30 C -0.12 -1.26 5.90 30.75 0.18 -1.08 16 31 C -0.05 -0.74 6.28 30.01 0.19 -0.55 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.38 19.73 6.85 -92.71 -0.63 19.09 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.02 0.77 7.31 -2.39 -0.02 0.75 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.91 7.18 -2.39 -0.02 1.90 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.40 9.17 7.52 -92.70 -0.70 8.48 16 45 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 50 H 0.07 0.71 8.11 -2.39 -0.02 0.69 16 51 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 52 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 53 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.13 413.17 0.94 -70.20 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -1.17 Total: 41.77 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.65 Total: -9.40 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -4.49 Total: -129.02 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.54 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -71.13 0.94 -70.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075963.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds