Wall clock time and date at job start Wed Apr 1 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36454 * 127.13832 * 2 1 4 4 N 1.38582 * 126.47153 * 0.02747 * 3 2 1 5 5 C 1.47842 * 110.99868 * 58.87357 * 4 3 2 6 6 C 1.54903 * 104.79731 * 146.36319 * 5 4 3 7 7 C 1.55146 * 101.65250 * 322.92990 * 6 5 4 8 8 H 1.09004 * 110.70296 * 277.27019 * 7 6 5 9 9 C 1.53005 * 110.70337 * 154.03772 * 7 6 5 10 10 N 1.46493 * 109.47275 * 71.40300 * 9 7 6 11 11 C 1.35310 * 125.87213 * 124.99922 * 10 9 7 12 12 C 1.35347 * 106.17920 * 179.97438 * 11 10 9 13 13 N 1.33764 * 106.49443 * 0.02562 * 12 11 10 14 14 N 1.28633 * 108.88838 * 359.73501 * 13 12 11 15 15 C 1.47438 * 111.00058 * 179.71728 * 4 3 2 16 16 N 1.31217 * 107.05387 * 179.77401 * 3 2 1 17 17 N 1.28519 * 109.86026 * 0.21987 * 16 3 2 18 18 C 1.30295 * 110.05720 * 0.02562 * 17 16 3 19 19 C 1.50703 * 126.34728 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46724 * 239.25869 * 19 18 17 21 21 C 1.52999 * 109.47131 * 359.26093 * 19 18 17 22 22 C 1.50701 * 109.46734 * 119.25725 * 19 18 17 23 23 H 1.07992 * 120.00294 * 0.02562 * 22 19 18 24 24 C 1.37881 * 119.99531 * 179.97438 * 22 19 18 25 25 N 1.31506 * 120.00199 * 0.02562 * 24 22 19 26 26 Si 1.86804 * 119.99607 * 180.02562 * 24 22 19 27 27 H 1.48494 * 109.47175 * 60.00038 * 26 24 22 28 28 H 1.48497 * 109.46605 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46792 * 299.99647 * 26 24 22 30 30 H 1.09004 * 109.47283 * 84.51247 * 1 2 3 31 31 H 1.08996 * 109.47558 * 204.50974 * 1 2 3 32 32 H 1.09003 * 109.47665 * 324.51496 * 1 2 3 33 33 H 1.09004 * 110.37495 * 265.19368 * 5 4 3 34 34 H 1.09001 * 110.37495 * 27.42246 * 5 4 3 35 35 H 1.09006 * 110.99324 * 204.84118 * 6 5 4 36 36 H 1.08999 * 110.99333 * 81.02358 * 6 5 4 37 37 H 1.09001 * 109.46557 * 191.40084 * 9 7 6 38 38 H 1.09006 * 109.46801 * 311.40164 * 9 7 6 39 39 H 1.08000 * 126.90718 * 0.02562 * 11 10 9 40 40 H 1.08001 * 126.75197 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.89073 * 117.33849 * 15 4 3 42 42 H 1.08994 * 109.89110 * 356.14688 * 15 4 3 43 43 H 1.08995 * 109.47613 * 53.40399 * 20 19 18 44 44 H 1.09001 * 109.46890 * 173.40615 * 20 19 18 45 45 H 1.09003 * 109.47145 * 293.39587 * 20 19 18 46 46 H 1.08994 * 109.47704 * 59.99862 * 21 19 18 47 47 H 1.09000 * 109.46966 * 179.97438 * 21 19 18 48 48 H 1.09000 * 109.46878 * 299.99514 * 21 19 18 49 49 H 0.97000 * 120.00074 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0005 5 6 1.0642 2.7239 1.1825 6 6 1.4155 4.1883 1.5453 7 6 2.9362 4.2303 1.2407 8 1 3.5084 3.8339 2.0795 9 6 3.3815 5.6552 0.9054 10 7 3.3582 6.4728 2.1208 11 6 4.3957 7.1858 2.6168 12 6 3.9383 7.7850 3.7410 13 7 2.6604 7.4137 3.8762 14 7 2.3455 6.6407 2.8974 15 6 3.0691 3.3126 0.0071 16 7 3.5211 0.6372 0.0049 17 7 3.5161 -0.6480 0.0034 18 6 2.2905 -1.0901 -0.0032 19 6 1.8621 -2.5349 -0.0076 20 6 1.0161 -2.8121 -1.2519 21 6 3.1001 -3.4338 -0.0218 22 6 1.0477 -2.8211 1.2277 23 1 0.8588 -2.0353 1.9440 24 6 0.5428 -4.0860 1.4427 25 7 0.7724 -5.0428 0.5702 26 14 -0.4673 -4.4406 2.9736 27 1 -1.6686 -3.5677 2.9871 28 1 -0.8893 -5.8643 2.9692 29 1 0.3536 -4.1718 4.1815 30 1 -0.3634 0.0983 -1.0230 31 1 -0.3634 -0.9350 0.4263 32 1 -0.3634 0.8368 0.5965 33 1 0.0064 2.6379 0.9335 34 1 1.3146 2.0563 2.0070 35 1 1.2230 4.3863 2.5997 36 1 0.8710 4.8888 0.9122 37 1 4.3936 5.6339 0.5013 38 1 2.7041 6.0832 0.1665 39 1 5.3888 7.2620 2.1992 40 1 4.4956 8.4349 4.3993 41 1 3.0819 3.9133 -0.9023 42 1 3.9844 2.7252 0.0790 43 1 1.5620 -2.4951 -2.1405 44 1 0.8045 -3.8794 -1.3170 45 1 0.0790 -2.2595 -1.1847 46 1 3.7028 -3.2363 0.8646 47 1 2.7902 -4.4789 -0.0245 48 1 3.6891 -3.2268 -0.9153 49 1 0.4176 -5.9327 0.7217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772162149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:33 Heat of formation + Delta-G solvation = 196.749844 kcal Electronic energy + Delta-G solvation = -30884.504241 eV Core-core repulsion = 26886.086155 eV Total energy + Delta-G solvation = -3998.418086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.50860 -42.33820 -39.37564 -35.86679 -35.45373 -34.08874 -32.33010 -31.34084 -31.19762 -30.03356 -27.78637 -27.06878 -26.54989 -25.68384 -25.34875 -23.09211 -22.50654 -22.24168 -21.77251 -20.90777 -20.10630 -18.93188 -18.02709 -17.20197 -16.66366 -16.48619 -15.70280 -15.51305 -15.18886 -15.13590 -14.82816 -14.69921 -14.36467 -13.92936 -13.49575 -13.24438 -13.03458 -12.91945 -12.73613 -12.34408 -12.30914 -12.03089 -11.68457 -11.61223 -11.46629 -11.40620 -11.13116 -11.11303 -11.00475 -10.92085 -10.79710 -10.57058 -10.37525 -10.36275 -10.15553 -9.91003 -9.75674 -9.66447 -9.40509 -9.39605 -8.88773 -8.53192 -7.66744 -6.17810 -4.30112 1.31938 2.01082 2.32927 2.44248 2.88043 3.18346 3.25141 3.27412 3.59171 3.88694 3.94934 4.10097 4.15837 4.26080 4.40402 4.51177 4.71249 4.77628 4.93890 4.98286 5.05403 5.07925 5.15312 5.22372 5.31513 5.40860 5.57181 5.59030 5.61641 5.71201 5.72346 5.83450 5.87783 5.91035 6.02156 6.17960 6.27561 6.47277 6.59662 6.73163 6.80799 6.81463 7.01859 7.17765 7.27350 7.48362 7.52813 7.73836 7.86978 8.00316 8.17173 8.25142 8.66452 9.35718 9.54091 10.83507 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002501 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.426853 B =11190.981335 C =11871.132950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.472 5.472 3 C 0.311 3.689 4 N -0.438 5.438 5 C 0.039 3.961 6 C -0.113 4.113 7 C -0.123 4.123 8 H 0.089 0.911 9 C 0.126 3.874 10 N -0.287 5.287 11 C -0.051 4.051 12 C -0.055 4.055 13 N -0.276 5.276 14 N -0.079 5.079 15 C 0.059 3.941 16 N -0.333 5.333 17 N -0.312 5.312 18 C 0.248 3.752 19 C 0.145 3.855 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.516 4.516 23 H 0.053 0.947 24 C 0.074 3.926 25 N -0.877 5.877 26 Si 0.895 3.105 27 H -0.277 1.277 28 H -0.284 1.284 29 H -0.276 1.276 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.190 0.810 40 H 0.188 0.812 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.012 0.988 44 H 0.093 0.907 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.088 0.912 48 H 0.018 0.982 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 20.533 -1.137 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.165 5.165 3 C -0.047 4.047 4 N -0.161 5.161 5 C -0.088 4.088 6 C -0.151 4.151 7 C -0.143 4.143 8 H 0.107 0.893 9 C 0.005 3.995 10 N -0.081 5.081 11 C -0.202 4.202 12 C -0.212 4.212 13 N -0.142 5.142 14 N -0.059 5.059 15 C -0.070 4.070 16 N -0.177 5.177 17 N -0.149 5.149 18 C -0.019 4.019 19 C 0.142 3.858 20 C -0.188 4.188 21 C -0.175 4.175 22 C -0.555 4.555 23 H 0.072 0.928 24 C -0.129 4.129 25 N -0.514 5.514 26 Si 0.722 3.278 27 H -0.202 1.202 28 H -0.210 1.210 29 H -0.202 1.202 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.207 0.793 40 H 0.205 0.795 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.031 0.969 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.107 0.893 48 H 0.037 0.963 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.439 20.047 -1.385 20.242 hybrid contribution -0.360 0.041 1.161 1.217 sum 2.079 20.088 -0.224 20.196 Atomic orbital electron populations 1.22231 0.75969 1.05718 1.02949 1.45917 1.08533 1.05546 1.56497 1.22474 0.87792 0.87125 1.07261 1.60306 1.18711 0.97667 1.39455 1.23264 0.98511 0.96641 0.90398 1.22789 0.93555 0.95513 1.03289 1.22703 0.98574 0.93024 0.99989 0.89292 1.22190 1.05222 0.89764 0.82333 1.47543 1.08239 1.32078 1.20269 1.23736 0.96472 1.00740 0.99252 1.23629 0.93308 1.05316 0.98953 1.75142 1.13546 1.09848 1.15651 1.78322 1.12261 1.15900 0.99408 1.22785 0.93703 0.93693 0.96783 1.74237 1.15585 1.04882 1.23024 1.73952 1.18267 1.01236 1.21444 1.26079 0.85128 0.92774 0.97951 1.16923 0.94303 0.78941 0.95654 1.21882 0.97516 1.04575 0.94779 1.21612 0.95310 1.02449 0.98105 1.20806 1.33152 0.96125 1.05392 0.92829 1.24837 0.95808 0.95824 0.96416 1.69799 1.44437 1.02394 1.34800 0.86607 0.80358 0.77467 0.83336 1.20212 1.20990 1.20193 0.91152 0.86693 0.90899 0.89071 0.92506 0.89292 0.89828 0.87023 0.87594 0.79295 0.79484 0.89347 0.88185 0.96870 0.88870 0.95000 0.94644 0.89321 0.96284 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.65 59.84 0.58 1.76 16 2 N -0.47 -9.22 3.21 -121.46 -0.39 -9.61 16 3 C 0.31 5.75 6.98 -318.87 -2.23 3.53 16 4 N -0.44 -6.12 5.22 -171.31 -0.89 -7.02 16 5 C 0.04 0.47 5.47 -2.30 -0.01 0.46 16 6 C -0.11 -1.10 5.59 -24.59 -0.14 -1.24 16 7 C -0.12 -1.10 3.12 -88.79 -0.28 -1.37 16 8 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.13 0.77 5.81 -4.04 -0.02 0.75 16 10 N -0.29 -2.46 3.44 -61.26 -0.21 -2.67 16 11 C -0.05 -0.35 11.57 -17.05 -0.20 -0.55 16 12 C -0.05 -0.47 12.05 -17.74 -0.21 -0.68 16 13 N -0.28 -3.38 12.41 30.23 0.38 -3.01 16 14 N -0.08 -0.92 11.51 60.35 0.69 -0.23 16 15 C 0.06 0.64 6.42 -2.84 -0.02 0.63 16 16 N -0.33 -7.07 10.47 30.31 0.32 -6.75 16 17 N -0.31 -7.41 11.50 32.99 0.38 -7.03 16 18 C 0.25 5.67 6.28 -154.01 -0.97 4.70 16 19 C 0.14 3.43 0.49 -156.81 -0.08 3.35 16 20 C -0.13 -2.88 7.96 37.16 0.30 -2.58 16 21 C -0.12 -2.83 7.75 37.16 0.29 -2.54 16 22 C -0.52 -12.84 6.42 -34.44 -0.22 -13.06 16 23 H 0.05 1.36 7.54 -52.49 -0.40 0.96 16 24 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 25 N -0.88 -22.28 9.43 55.43 0.52 -21.76 16 26 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 2.03 5.61 -51.93 -0.29 1.74 16 32 H 0.07 0.96 5.56 -51.93 -0.29 0.67 16 33 H 0.09 0.99 6.77 -51.93 -0.35 0.64 16 34 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 35 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 36 H 0.08 0.73 7.94 -51.93 -0.41 0.31 16 37 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.11 0.53 8.00 -51.93 -0.42 0.11 16 39 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.09 0.77 7.82 -51.93 -0.41 0.36 16 42 H 0.10 1.34 6.32 -51.93 -0.33 1.01 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 2.23 6.27 -51.93 -0.33 1.90 16 45 H 0.03 0.65 6.35 -51.93 -0.33 0.32 16 46 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -31.89 381.56 -8.95 -40.84 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.17 Total: 1.90 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.30 Total: -5.09 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.79 Total: -58.07 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.89 -8.95 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772162149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.588 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds