Wall clock time and date at job start Wed Apr 1 2020 03:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38311 * 119.96416 * 2 1 4 4 C 1.38253 * 120.14301 * 180.28037 * 3 2 1 5 5 C 1.38136 * 120.06845 * 359.48823 * 4 3 2 6 6 C 1.38848 * 119.93093 * 0.25992 * 5 4 3 7 7 N 1.39929 * 120.07504 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99412 * 331.46589 * 7 6 5 9 9 O 1.21285 * 120.00095 * 4.24670 * 8 7 6 10 10 C 1.50697 * 119.99578 * 184.24658 * 8 7 6 11 11 H 1.09002 * 109.47329 * 45.90950 * 10 8 7 12 12 C 1.53004 * 109.47290 * 285.90947 * 10 8 7 13 13 N 1.46902 * 109.47245 * 165.91088 * 10 8 7 14 14 C 1.46956 * 110.99991 * 195.61010 * 13 10 8 15 15 C 1.53049 * 109.36217 * 176.80972 * 14 13 10 16 16 N 1.46954 * 109.36531 * 58.39640 * 15 14 13 17 17 C 1.46909 * 111.00185 * 176.81147 * 16 15 14 18 18 C 1.50705 * 109.47005 * 58.89021 * 17 16 15 19 19 H 1.08001 * 119.99694 * 4.79416 * 18 17 16 20 20 C 1.37875 * 120.00174 * 184.79273 * 18 17 16 21 21 N 1.31508 * 120.00206 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99616 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47034 * 90.00105 * 22 20 18 24 24 H 1.48504 * 109.47066 * 209.99796 * 22 20 18 25 25 H 1.48494 * 109.47279 * 330.00227 * 22 20 18 26 26 C 1.46956 * 110.88506 * 300.68006 * 16 15 14 27 27 C 1.46954 * 111.00086 * 71.80400 * 13 10 8 28 28 C 1.38091 * 119.96803 * 179.77013 * 2 1 3 29 29 C 1.50696 * 120.03368 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.46486 * 270.22859 * 1 2 3 31 31 H 1.08996 * 109.47144 * 30.23045 * 1 2 3 32 32 H 1.09002 * 109.47106 * 150.23233 * 1 2 3 33 33 H 1.08004 * 119.92388 * 0.04999 * 3 2 1 34 34 H 1.07996 * 119.96761 * 179.76956 * 4 3 2 35 35 H 1.08003 * 120.03459 * 180.28082 * 5 4 3 36 36 H 0.96993 * 120.00289 * 151.46163 * 7 6 5 37 37 H 1.08999 * 109.47297 * 60.00026 * 12 10 8 38 38 H 1.09000 * 109.47310 * 180.02562 * 12 10 8 39 39 H 1.09002 * 109.46936 * 300.00243 * 12 10 8 40 40 H 1.08999 * 109.48426 * 296.77357 * 14 13 10 41 41 H 1.09002 * 109.48996 * 56.84147 * 14 13 10 42 42 H 1.09008 * 109.48660 * 298.43098 * 15 14 13 43 43 H 1.09000 * 109.50724 * 178.37567 * 15 14 13 44 44 H 1.08990 * 109.47204 * 178.89434 * 17 16 15 45 45 H 1.09000 * 109.46775 * 298.89902 * 17 16 15 46 46 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.48426 * 299.35422 * 26 16 15 48 48 H 1.08993 * 109.49045 * 179.28880 * 26 16 15 49 49 H 1.08995 * 109.49359 * 303.16173 * 27 13 10 50 50 H 1.09001 * 109.48817 * 63.20518 * 27 13 10 51 51 H 1.08997 * 109.47355 * 269.97988 * 29 28 2 52 52 H 1.09007 * 109.47119 * 29.97724 * 29 28 2 53 53 H 1.09003 * 109.47135 * 149.97541 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0059 5 6 4.2762 0.0093 -0.0010 6 6 3.5858 -1.1953 0.0042 7 7 4.2876 -2.4059 0.0096 8 6 5.5128 -2.4768 -0.5475 9 8 6.0392 -1.4754 -0.9846 10 6 6.2286 -3.8006 -0.6274 11 1 5.5396 -4.5651 -0.9864 12 6 6.7414 -4.1877 0.7612 13 7 7.3626 -3.6890 -1.5545 14 6 7.8555 -5.0169 -1.9460 15 6 8.9813 -4.8585 -2.9706 16 7 10.0609 -4.0500 -2.3873 17 6 11.1949 -3.9383 -3.3145 18 6 10.7306 -3.3078 -4.6022 19 1 9.7162 -2.9485 -4.6925 20 6 11.6009 -3.1898 -5.6651 21 7 11.1960 -2.6392 -6.7886 22 14 13.3554 -3.8121 -5.5090 23 1 13.4167 -5.2326 -5.9376 24 1 14.2484 -2.9961 -6.3705 25 1 13.7957 -3.7022 -4.0951 26 6 9.5680 -2.7220 -1.9959 27 6 8.4422 -2.8804 -0.9712 28 6 2.1968 -1.1963 0.0048 29 6 1.4434 -2.5014 0.0095 30 1 -0.3632 0.0041 1.0277 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6560 2.1325 0.0008 34 1 4.1169 2.1398 -0.0096 35 1 5.3562 0.0133 -0.0010 36 1 3.8925 -3.1938 0.4144 37 1 5.9001 -4.2706 1.4492 38 1 7.2595 -5.1449 0.7034 39 1 7.4304 -3.4231 1.1202 40 1 8.2346 -5.5377 -1.0667 41 1 7.0409 -5.5918 -2.3866 42 1 8.5954 -4.3619 -3.8610 43 1 9.3682 -5.8410 -3.2410 44 1 11.9714 -3.3188 -2.8659 45 1 11.5954 -4.9310 -3.5198 46 1 11.8084 -2.5559 -7.5362 47 1 9.1888 -2.2013 -2.8751 48 1 10.3825 -2.1471 -1.5554 49 1 8.0554 -1.8978 -0.7011 50 1 8.8278 -3.3768 -0.0807 51 1 1.2616 -2.8123 1.0382 52 1 0.4909 -2.3729 -0.5049 53 1 2.0325 -3.2628 -0.5017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173926.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:43 Heat of formation + Delta-G solvation = -11.443156 kcal Electronic energy + Delta-G solvation = -30904.193011 eV Core-core repulsion = 26967.994592 eV Total energy + Delta-G solvation = -3936.198419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95866 -40.56625 -39.46015 -37.07987 -36.04308 -34.61055 -34.24962 -32.62537 -31.82014 -31.27553 -29.39491 -28.31345 -27.21981 -26.86567 -25.32735 -24.51101 -23.38893 -22.45985 -22.14183 -20.91368 -20.37289 -18.84379 -18.63724 -17.92007 -17.14205 -16.82972 -16.68997 -16.33607 -15.98132 -15.94903 -15.74668 -15.66914 -15.13484 -15.07378 -14.76636 -14.57952 -14.47996 -14.24766 -13.93192 -13.69620 -13.63963 -13.49684 -13.42434 -13.14536 -12.92495 -12.84712 -12.80061 -12.76495 -12.59421 -12.32872 -12.23976 -12.06557 -11.90911 -11.84151 -11.82471 -11.70611 -11.47900 -11.24626 -10.80352 -10.53977 -9.46567 -9.25276 -9.02016 -8.97685 -8.32265 -6.38206 0.31529 0.43948 1.33718 1.36094 1.48581 1.56336 1.91721 2.32829 2.83140 2.95994 3.02145 3.30142 3.57959 3.89011 3.90317 3.94908 4.04031 4.14209 4.16638 4.24531 4.26283 4.36980 4.44414 4.46822 4.51633 4.54831 4.66954 4.68567 4.75632 4.77484 4.82090 4.88606 4.90010 4.93342 4.97129 4.99125 5.02579 5.11385 5.12409 5.15118 5.16797 5.27047 5.35443 5.37386 5.50133 5.52202 5.62486 5.71140 5.94795 6.06093 6.13921 6.15490 6.32772 6.38101 6.47174 6.69407 7.15643 7.28248 8.84708 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002285 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.159742 B =12252.654464 C =12974.020169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.143 4.143 4 C -0.118 4.118 5 C -0.161 4.161 6 C 0.137 3.863 7 N -0.655 5.655 8 C 0.515 3.485 9 O -0.542 6.542 10 C 0.071 3.929 11 H 0.135 0.865 12 C -0.174 4.174 13 N -0.544 5.544 14 C 0.072 3.928 15 C 0.061 3.939 16 N -0.525 5.525 17 C 0.160 3.840 18 C -0.549 4.549 19 H 0.026 0.974 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.956 3.044 23 H -0.262 1.262 24 H -0.285 1.285 25 H -0.246 1.246 26 C 0.066 3.934 27 C 0.073 3.927 28 C -0.122 4.122 29 C -0.116 4.116 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.426 0.574 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.008 0.992 43 H 0.078 0.922 44 H 0.027 0.973 45 H 0.036 0.964 46 H 0.266 0.734 47 H 0.002 0.998 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.090 0.910 52 H 0.086 0.914 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.829 -3.372 21.985 31.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.161 4.161 4 C -0.136 4.136 5 C -0.181 4.181 6 C 0.042 3.958 7 N -0.302 5.302 8 C 0.304 3.696 9 O -0.417 6.417 10 C -0.041 4.041 11 H 0.153 0.847 12 C -0.233 4.233 13 N -0.269 5.269 14 C -0.055 4.055 15 C -0.068 4.068 16 N -0.248 5.248 17 C 0.032 3.968 18 C -0.587 4.587 19 H 0.045 0.955 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.779 3.221 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.169 1.169 26 C -0.063 4.063 27 C -0.055 4.055 28 C -0.124 4.124 29 C -0.172 4.172 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.026 0.974 43 H 0.097 0.903 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.020 0.980 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.108 0.892 52 H 0.105 0.895 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.348 -2.701 21.489 31.120 hybrid contribution 1.059 0.322 -0.911 1.434 sum -21.288 -2.378 20.578 29.703 Atomic orbital electron populations 1.20902 0.88751 1.03819 1.03421 1.19970 0.97573 0.91709 0.98554 1.21278 0.93703 0.98740 1.02396 1.21229 0.95072 0.97684 0.99655 1.21480 1.01027 0.92292 1.03340 1.17774 0.91118 0.85692 1.01241 1.43360 1.17246 1.11755 1.57815 1.21246 0.80986 0.91656 0.75750 1.90661 1.66088 1.38408 1.46558 1.21694 0.94195 0.93784 0.94380 0.84727 1.22362 1.03270 1.02940 0.94716 1.61845 1.08225 1.15568 1.41245 1.22187 0.96578 0.88801 0.97965 1.22016 0.91640 0.97496 0.95644 1.62698 1.08155 1.13769 1.40189 1.20038 0.91081 0.96301 0.89336 1.21888 0.98245 1.39782 0.98831 0.95531 1.26028 1.03926 0.94788 0.94443 1.70108 1.38006 1.46232 1.04752 0.85579 0.78241 0.78784 0.79495 1.18697 1.21100 1.16926 1.21917 0.96540 0.90993 0.96809 1.22139 0.89922 0.98286 0.95141 1.19807 0.90780 0.97464 1.04359 1.20880 1.00442 0.92225 1.03696 0.89737 0.90865 0.90082 0.84153 0.85337 0.86139 0.73505 0.88777 0.89715 0.92802 0.91971 0.88453 0.97354 0.90325 0.95474 0.94567 0.92535 0.97988 0.91490 0.90462 0.92561 0.89178 0.89540 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.60 71.24 0.68 -0.42 16 2 C -0.08 -1.32 5.88 -19.88 -0.12 -1.43 16 3 C -0.14 -2.71 9.70 22.29 0.22 -2.50 16 4 C -0.12 -2.77 10.04 22.25 0.22 -2.55 16 5 C -0.16 -4.46 8.76 22.39 0.20 -4.26 16 6 C 0.14 3.14 6.39 38.15 0.24 3.38 16 7 N -0.66 -12.47 4.90 -303.50 -1.49 -13.95 16 8 C 0.52 13.29 6.85 87.66 0.60 13.89 16 9 O -0.54 -19.65 11.34 -3.05 -0.03 -19.69 16 10 C 0.07 1.50 2.70 44.17 0.12 1.62 16 11 H 0.14 2.00 7.92 -2.39 -0.02 1.98 16 12 C -0.17 -2.65 8.30 71.98 0.60 -2.06 16 13 N -0.54 -16.85 4.41 -874.87 -3.86 -20.71 16 14 C 0.07 2.06 5.40 86.31 0.47 2.52 16 15 C 0.06 2.42 5.23 86.31 0.45 2.87 16 16 N -0.52 -22.66 4.92 -900.28 -4.43 -27.09 16 17 C 0.16 7.94 4.21 85.56 0.36 8.30 16 18 C -0.55 -32.86 8.21 25.60 0.21 -32.65 16 19 H 0.03 1.82 6.07 -2.91 -0.02 1.80 16 20 C 0.01 0.34 5.47 84.66 0.46 0.80 16 21 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 22 Si 0.96 45.26 27.38 68.60 1.88 47.14 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.25 -10.81 6.68 99.48 0.66 -10.14 16 26 C 0.07 2.87 5.32 86.31 0.46 3.33 16 27 C 0.07 2.50 4.44 86.31 0.38 2.88 16 28 C -0.12 -2.17 5.90 -19.74 -0.12 -2.28 16 29 C -0.12 -1.17 9.04 71.23 0.64 -0.52 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.08 0.63 5.94 -2.39 -0.01 0.61 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.12 3.96 5.73 -2.91 -0.02 3.94 16 36 H 0.43 4.51 7.57 -92.71 -0.70 3.81 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.17 6.99 -2.39 -0.02 1.15 16 39 H 0.05 1.03 6.39 -2.39 -0.02 1.02 16 40 H 0.06 1.51 6.99 -2.39 -0.02 1.50 16 41 H 0.10 2.28 8.02 -2.39 -0.02 2.26 16 42 H 0.01 0.40 6.61 -2.38 -0.02 0.38 16 43 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.03 1.34 7.50 -2.39 -0.02 1.33 16 45 H 0.04 1.72 7.31 -2.39 -0.02 1.70 16 46 H 0.27 16.09 8.31 -92.71 -0.77 15.31 16 47 H 0.00 0.09 6.79 -2.39 -0.02 0.07 16 48 H 0.07 2.81 8.12 -2.39 -0.02 2.79 16 49 H 0.08 2.85 5.90 -2.39 -0.01 2.83 16 50 H 0.06 1.68 6.41 -2.39 -0.02 1.67 16 51 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.09 0.69 5.94 -2.38 -0.01 0.67 16 53 H 0.07 0.63 7.06 -2.39 -0.02 0.62 16 Total: -1.00 -81.83 397.58 -1.36 -83.19 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.18 Total: 21.76 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 6.09 Total: -9.09 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -9.47 Total: -123.31 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.03 Total: -19.69 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -81.83 -1.36 -83.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173926.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.745 kcal (2) G-P(sol) polarization free energy of solvation -81.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds